RNA–Protein interactions for RNA: ENST00000491581.5

HDAC3-211, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 777 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-211ENST00000491581 CCDC146Q8IYE0 955 aa11.86□□□□□ -0.51
HDAC3-211ENST00000491581 ZNF622Q969S3 477 aaKnown RBP eCLIP11.86□□□□□ -0.51
HDAC3-211ENST00000491581 ZNF428Q96B54 188 aa11.86□□□□□ -0.51
HDAC3-211ENST00000491581 ARFGEF2Q9Y6D5 1785 aa11.85□□□□□ -0.51
HDAC3-211ENST00000491581 C21orf2O43822 256 aa11.85□□□□□ -0.51
HDAC3-211ENST00000491581 RRAGCQ9HB90 399 aa11.85□□□□□ -0.51
HDAC3-211ENST00000491581 ANXA1P04083 346 aa11.84□□□□□ -0.51
HDAC3-211ENST00000491581 SNRPA1P09661 255 aaKnown RBP11.84□□□□□ -0.51
HDAC3-211ENST00000491581 TAF7Q15545 349 aaPredicted RBP11.84□□□□□ -0.51
HDAC3-211ENST00000491581 NFE2L2Q16236 605 aa11.84□□□□□ -0.51
HDAC3-211ENST00000491581 KRT24Q2M2I5 525 aa11.84□□□□□ -0.51
HDAC3-211ENST00000491581 TTLL7Q6ZT98 887 aa11.84□□□□□ -0.51
HDAC3-211ENST00000491581 A0A087WZG4 1122 aa11.83□□□□□ -0.52
HDAC3-211ENST00000491581 H0YIN7 160 aa11.83□□□□□ -0.52
HDAC3-211ENST00000491581 MYL6BP14649 208 aa11.83□□□□□ -0.52
HDAC3-211ENST00000491581 HSPA6P17066 643 aa11.83□□□□□ -0.52
HDAC3-211ENST00000491581 TTLL6Q8N841 843 aa11.83□□□□□ -0.52
HDAC3-211ENST00000491581 TEX13AQ9BXU3 409 aaPredicted RBP11.83□□□□□ -0.52
HDAC3-211ENST00000491581 DICER1Q9UPY3 1922 aaKnown RBP11.83□□□□□ -0.52
HDAC3-211ENST00000491581 WDR90Q96KV7 1748 aa11.83□□□□□ -0.52
HDAC3-211ENST00000491581 EIF4A1P60842 406 aaKnown RBP11.82□□□□□ -0.52
HDAC3-211ENST00000491581 NEUROD2Q15784 382 aa11.82□□□□□ -0.52
HDAC3-211ENST00000491581 CNBD1Q8NA66 436 aa11.82□□□□□ -0.52
HDAC3-211ENST00000491581 NECTIN2Q92692 538 aa11.82□□□□□ -0.52
HDAC3-211ENST00000491581 SETDB2Q96T68 719 aa11.82□□□□□ -0.52
HDAC3-211ENST00000491581 CEP350Q5VT06 3117 aa11.82□□□□□ -0.52
HDAC3-211ENST00000491581 ABCC12Q96J65 1359 aa11.81□□□□□ -0.52
HDAC3-211ENST00000491581 PROSER3Q2NL68 480 aa11.81□□□□□ -0.52
HDAC3-211ENST00000491581 NUTM1Q86Y26 1132 aa11.81□□□□□ -0.52
HDAC3-211ENST00000491581 BRIP1Q9BX63 1249 aa11.81□□□□□ -0.52
HDAC3-211ENST00000491581 ZBTB3Q9H5J0 574 aa11.81□□□□□ -0.52
HDAC3-211ENST00000491581 NIP7Q9Y221 180 aaKnown RBP eCLIP11.81□□□□□ -0.52
HDAC3-211ENST00000491581 TAF1P21675 1872 aa11.8□□□□□ -0.52
HDAC3-211ENST00000491581 NPHP1O15259 732 aa11.8□□□□□ -0.52
HDAC3-211ENST00000491581 HTATSF1O43719 755 aaKnown RBP11.8□□□□□ -0.52
HDAC3-211ENST00000491581 GPTP24298 496 aa11.8□□□□□ -0.52
HDAC3-211ENST00000491581 LAMB2P55268 1798 aa11.79□□□□□ -0.52
HDAC3-211ENST00000491581 POTECB2RU33 542 aa11.79□□□□□ -0.52
HDAC3-211ENST00000491581 SRGNP10124 158 aa11.79□□□□□ -0.52
HDAC3-211ENST00000491581 RIPK4P57078 832 aa11.79□□□□□ -0.52
HDAC3-211ENST00000491581 PRPF40BQ6NWY9 871 aaKnown RBP11.79□□□□□ -0.52
HDAC3-211ENST00000491581 C3orf67Q6ZVT6 689 aa11.79□□□□□ -0.52
HDAC3-211ENST00000491581 NBPF5PQ86XG9 351 aaPredicted RBP11.79□□□□□ -0.52
HDAC3-211ENST00000491581 UBN2Q6ZU65 1347 aa11.79□□□□□ -0.52
HDAC3-211ENST00000491581 MAPK8IP3Q9UPT6 1336 aa11.79□□□□□ -0.52
HDAC3-211ENST00000491581 COL4A5P29400 1685 aa11.78□□□□□ -0.52
HDAC3-211ENST00000491581 ANKRD36CQ5JPF3 1778 aa11.78□□□□□ -0.52
HDAC3-211ENST00000491581 TOMM70O94826 608 aa11.78□□□□□ -0.52
HDAC3-211ENST00000491581 POTEIP0CG38 1075 aa11.78□□□□□ -0.52
HDAC3-211ENST00000491581 POTEJP0CG39 1038 aa11.78□□□□□ -0.52
HDAC3-211ENST00000491581 EIF2S2P20042 333 aaKnown RBP11.78□□□□□ -0.52
HDAC3-211ENST00000491581 LMNB1P20700 586 aa11.78□□□□□ -0.52
HDAC3-211ENST00000491581 PDE6BP35913 854 aa11.78□□□□□ -0.52
HDAC3-211ENST00000491581 TMPOP42166 694 aaKnown RBP11.78□□□□□ -0.52
HDAC3-211ENST00000491581 ERFEQ4G0M1 354 aa11.78□□□□□ -0.52
HDAC3-211ENST00000491581 NPM2Q86SE8 214 aaKnown RBP11.78□□□□□ -0.52
HDAC3-211ENST00000491581 COL4A1P02462 1669 aa11.78□□□□□ -0.52
HDAC3-211ENST00000491581 TCERG1O14776 1098 aaKnown RBP11.77□□□□□ -0.53
HDAC3-211ENST00000491581 ST5P78524 1137 aa11.77□□□□□ -0.53
HDAC3-211ENST00000491581 PDIA6Q15084 440 aa11.77□□□□□ -0.53
HDAC3-211ENST00000491581 CCDC184Q52MB2 194 aa11.77□□□□□ -0.53
HDAC3-211ENST00000491581 LRP10Q7Z4F1 713 aa11.77□□□□□ -0.53
HDAC3-211ENST00000491581 TSPYL4Q9UJ04 414 aa11.77□□□□□ -0.53
HDAC3-211ENST00000491581 TRIM35Q9UPQ4 493 aa11.77□□□□□ -0.53
HDAC3-211ENST00000491581 LAS1LQ9Y4W2 734 aaKnown RBP11.77□□□□□ -0.53
HDAC3-211ENST00000491581 SUSD4Q5VX71 490 aa11.76□□□□□ -0.53
HDAC3-211ENST00000491581 SYNE4Q8N205 404 aa11.76□□□□□ -0.53
HDAC3-211ENST00000491581 ADAMTS8Q9UP79 889 aa11.76□□□□□ -0.53
HDAC3-211ENST00000491581 MYBBP1AQ9BQG0 1328 aaKnown RBP11.76□□□□□ -0.53
HDAC3-211ENST00000491581 DDNO94850 711 aaPredicted RBP11.75□□□□□ -0.53
HDAC3-211ENST00000491581 NEFMP07197 916 aa11.75□□□□□ -0.53
HDAC3-211ENST00000491581 RALBP1Q15311 655 aa11.75□□□□□ -0.53
HDAC3-211ENST00000491581 STYK1Q6J9G0 422 aa11.75□□□□□ -0.53
HDAC3-211ENST00000491581 DNAJC5GQ8N7S2 189 aa11.75□□□□□ -0.53
HDAC3-211ENST00000491581 C7orf43Q8WVR3 580 aa11.75□□□□□ -0.53
HDAC3-211ENST00000491581 MASTLQ96GX5 879 aa11.75□□□□□ -0.53
HDAC3-211ENST00000491581 ZNF277Q9NRM2 450 aaPredicted RBP11.75□□□□□ -0.53
HDAC3-211ENST00000491581 MAP3K15Q6ZN16 1313 aa11.75□□□□□ -0.53
HDAC3-211ENST00000491581 KDM2BQ8NHM5 1336 aa11.75□□□□□ -0.53
HDAC3-211ENST00000491581 GLTPD2A6NH11 291 aa11.74□□□□□ -0.53
HDAC3-211ENST00000491581 AIMP1Q12904 312 aaKnown RBP11.74□□□□□ -0.53
HDAC3-211ENST00000491581 CLEC4GQ6UXB4 293 aa11.74□□□□□ -0.53
HDAC3-211ENST00000491581 C16orf71Q8IYS4 520 aaPredicted RBP11.74□□□□□ -0.53
HDAC3-211ENST00000491581 ZNF652Q9Y2D9 606 aa11.74□□□□□ -0.53
HDAC3-211ENST00000491581 ZNF541Q9H0D2 1346 aa11.74□□□□□ -0.53
HDAC3-211ENST00000491581 DDX60Q8IY21 1712 aaKnown RBP11.73□□□□□ -0.53
HDAC3-211ENST00000491581 RBM46Q8TBY0 533 aaKnown RBP11.73□□□□□ -0.53
HDAC3-211ENST00000491581 SNED1Q8TER0 1413 aa11.73□□□□□ -0.53
HDAC3-211ENST00000491581 CNKSR1Q969H4 720 aa11.73□□□□□ -0.53
HDAC3-211ENST00000491581 TAOK3Q9H2K8 898 aa11.73□□□□□ -0.53
HDAC3-211ENST00000491581 LTBP1Q14766 1721 aa11.72□□□□□ -0.53
HDAC3-211ENST00000491581 KLRG2A4D1S0 409 aaPredicted RBP11.72□□□□□ -0.53
HDAC3-211ENST00000491581 NTSR2O95665 410 aa11.72□□□□□ -0.53
HDAC3-211ENST00000491581 NPR1P16066 1061 aa11.72□□□□□ -0.53
HDAC3-211ENST00000491581 GTF2E1P29083 439 aaPredicted RBP11.72□□□□□ -0.53
HDAC3-211ENST00000491581 TPTE2Q6XPS3 522 aa11.72□□□□□ -0.53
HDAC3-211ENST00000491581 KIF6Q6ZMV9 814 aa11.72□□□□□ -0.53
HDAC3-211ENST00000491581 ZNF34Q8IZ26 560 aa11.72□□□□□ -0.53
HDAC3-211ENST00000491581 PNISRQ8TF01 805 aaKnown RBP11.72□□□□□ -0.53
HDAC3-211ENST00000491581 PRKRIP1Q9H875 184 aaPredicted RBP11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 83 ms