RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 ZC3H4Q9UPT8 1303 aaKnown RBP18.06■□□□□ 0.48
COL6A3-211ENST00000491233 NFKBIEO00221 500 aa18.06■□□□□ 0.48
COL6A3-211ENST00000491233 PRELPP51888 382 aa18.06■□□□□ 0.48
COL6A3-211ENST00000491233 THUMPD2Q9BTF0 503 aaKnown RBP18.06■□□□□ 0.48
COL6A3-211ENST00000491233 ZNF652Q9Y2D9 606 aa18.06■□□□□ 0.48
COL6A3-211ENST00000491233 NUP98P52948 1817 aa18.06■□□□□ 0.48
COL6A3-211ENST00000491233 WDR90Q96KV7 1748 aa18.06■□□□□ 0.48
COL6A3-211ENST00000491233 LMNB1P20700 586 aa18.05■□□□□ 0.48
COL6A3-211ENST00000491233 CLEC4GQ6UXB4 293 aa18.05■□□□□ 0.48
COL6A3-211ENST00000491233 PNISRQ8TF01 805 aaKnown RBP18.05■□□□□ 0.48
COL6A3-211ENST00000491233 NBPF5PQ86XG9 351 aaPredicted RBP18.04■□□□□ 0.48
COL6A3-211ENST00000491233 C16orf71Q8IYS4 520 aaPredicted RBP18.04■□□□□ 0.48
COL6A3-211ENST00000491233 PNNQ9H307 717 aaKnown RBP18.04■□□□□ 0.48
COL6A3-211ENST00000491233 ZNF219Q9P2Y4 722 aaPredicted RBP18.04■□□□□ 0.48
COL6A3-211ENST00000491233 RALBP1Q15311 655 aa18.03■□□□□ 0.48
COL6A3-211ENST00000491233 C21orf2O43822 256 aa18.02■□□□□ 0.48
COL6A3-211ENST00000491233 STYK1Q6J9G0 422 aa18.02■□□□□ 0.48
COL6A3-211ENST00000491233 RBM46Q8TBY0 533 aaKnown RBP18.02■□□□□ 0.48
COL6A3-211ENST00000491233 NIP7Q9Y221 180 aaKnown RBP eCLIP18.02■□□□□ 0.48
COL6A3-211ENST00000491233 RGL2O15211 777 aa18.01■□□□□ 0.47
COL6A3-211ENST00000491233 SRGNP10124 158 aa18.01■□□□□ 0.47
COL6A3-211ENST00000491233 EIF4A1P60842 406 aaKnown RBP18.01■□□□□ 0.47
COL6A3-211ENST00000491233 CNKSR1Q969H4 720 aa18.01■□□□□ 0.47
COL6A3-211ENST00000491233 RRAGCQ9HB90 399 aa18.01■□□□□ 0.47
COL6A3-211ENST00000491233 APLP1P51693 650 aa18■□□□□ 0.47
COL6A3-211ENST00000491233 DDX10Q13206 875 aaKnown RBP18■□□□□ 0.47
COL6A3-211ENST00000491233 HLFQ16534 295 aa18■□□□□ 0.47
COL6A3-211ENST00000491233 PRPF40BQ6NWY9 871 aaKnown RBP18■□□□□ 0.47
COL6A3-211ENST00000491233 MASTLQ96GX5 879 aa18■□□□□ 0.47
COL6A3-211ENST00000491233 FAM177BA6PVY3 158 aa17.99■□□□□ 0.47
COL6A3-211ENST00000491233 NGEFQ8N5V2 710 aa17.99■□□□□ 0.47
COL6A3-211ENST00000491233 MYBBP1AQ9BQG0 1328 aaKnown RBP17.98■□□□□ 0.47
COL6A3-211ENST00000491233 LTBP3Q9NS15 1303 aa17.98■□□□□ 0.47
COL6A3-211ENST00000491233 CEP350Q5VT06 3117 aa17.98■□□□□ 0.47
COL6A3-211ENST00000491233 GLTPD2A6NH11 291 aa17.98■□□□□ 0.47
COL6A3-211ENST00000491233 TAOK3Q9H2K8 898 aa17.98■□□□□ 0.47
COL6A3-211ENST00000491233 ABCC12Q96J65 1359 aa17.97■□□□□ 0.47
COL6A3-211ENST00000491233 MYL6BP14649 208 aa17.97■□□□□ 0.47
COL6A3-211ENST00000491233 TPTE2Q6XPS3 522 aa17.97■□□□□ 0.47
COL6A3-211ENST00000491233 TSPYL4Q9UJ04 414 aa17.97■□□□□ 0.47
COL6A3-211ENST00000491233 RRP7AQ9Y3A4 280 aaKnown RBP17.97■□□□□ 0.47
COL6A3-211ENST00000491233 MAP3K15Q6ZN16 1313 aa17.97■□□□□ 0.47
COL6A3-211ENST00000491233 ANKRD36CQ5JPF3 1778 aa17.96■□□□□ 0.47
COL6A3-211ENST00000491233 NPR1P16066 1061 aa17.96■□□□□ 0.47
COL6A3-211ENST00000491233 RIPK4P57078 832 aa17.96■□□□□ 0.47
COL6A3-211ENST00000491233 FSTL1Q12841 308 aa17.96■□□□□ 0.47
COL6A3-211ENST00000491233 SOGA3Q5TF21 947 aa17.96■□□□□ 0.47
COL6A3-211ENST00000491233 KIF6Q6ZMV9 814 aa17.96■□□□□ 0.47
COL6A3-211ENST00000491233 TTLL7Q6ZT98 887 aa17.96■□□□□ 0.47
COL6A3-211ENST00000491233 ERVV-1B6SEH8 477 aa17.95■□□□□ 0.46
COL6A3-211ENST00000491233 TMPOP42166 694 aaKnown RBP17.95■□□□□ 0.46
COL6A3-211ENST00000491233 ERFEQ4G0M1 354 aa17.95■□□□□ 0.46
COL6A3-211ENST00000491233 ERBB4Q15303 1308 aa17.95■□□□□ 0.46
COL6A3-211ENST00000491233 KLRG2A4D1S0 409 aaPredicted RBP17.94■□□□□ 0.46
COL6A3-211ENST00000491233 GTF2E1P29083 439 aaPredicted RBP17.94■□□□□ 0.46
COL6A3-211ENST00000491233 LMOD3Q0VAK6 560 aa17.94■□□□□ 0.46
COL6A3-211ENST00000491233 CCDC146Q8IYE0 955 aa17.94■□□□□ 0.46
COL6A3-211ENST00000491233 ZBTB3Q9H5J0 574 aa17.94■□□□□ 0.46
COL6A3-211ENST00000491233 IBTKQ9P2D0 1353 aaPredicted RBP17.93■□□□□ 0.46
COL6A3-211ENST00000491233 VEGFAP15692 232 aaPredicted RBP17.93■□□□□ 0.46
COL6A3-211ENST00000491233 CCDC93Q567U6 631 aa17.93■□□□□ 0.46
COL6A3-211ENST00000491233 SMC1BQ8NDV3 1235 aa17.93■□□□□ 0.46
COL6A3-211ENST00000491233 UBN2Q6ZU65 1347 aa17.93■□□□□ 0.46
COL6A3-211ENST00000491233 RIC1Q4ADV7 1423 aa17.92■□□□□ 0.46
COL6A3-211ENST00000491233 GPTP24298 496 aa17.92■□□□□ 0.46
COL6A3-211ENST00000491233 NUTM1Q86Y26 1132 aa17.92■□□□□ 0.46
COL6A3-211ENST00000491233 C7orf43Q8WVR3 580 aa17.92■□□□□ 0.46
COL6A3-211ENST00000491233 NYXQ9GZU5 481 aa17.92■□□□□ 0.46
COL6A3-211ENST00000491233 HTRA3P83110 453 aa17.91■□□□□ 0.46
COL6A3-211ENST00000491233 DPY19L2Q6NUT2 758 aa17.91■□□□□ 0.46
COL6A3-211ENST00000491233 LAMB2P55268 1798 aa17.9■□□□□ 0.46
COL6A3-211ENST00000491233 EIF2S2P20042 333 aaKnown RBP17.9■□□□□ 0.46
COL6A3-211ENST00000491233 WDR43Q15061 677 aaKnown RBP eCLIP17.9■□□□□ 0.46
COL6A3-211ENST00000491233 NEUROD2Q15784 382 aa17.9■□□□□ 0.46
COL6A3-211ENST00000491233 OLFM4Q6UX06 510 aa17.9■□□□□ 0.46
COL6A3-211ENST00000491233 BABAM1Q9NWV8 329 aa17.9■□□□□ 0.46
COL6A3-211ENST00000491233 POTECB2RU33 542 aa17.89■□□□□ 0.45
COL6A3-211ENST00000491233 ANXA1P04083 346 aa17.89■□□□□ 0.45
COL6A3-211ENST00000491233 LRP10Q7Z4F1 713 aa17.89■□□□□ 0.45
COL6A3-211ENST00000491233 DNAJC5GQ8N7S2 189 aa17.89■□□□□ 0.45
COL6A3-211ENST00000491233 SCN4AP35499 1836 aa17.88■□□□□ 0.45
COL6A3-211ENST00000491233 FKBP4Q02790 459 aaKnown RBP eCLIP17.88■□□□□ 0.45
COL6A3-211ENST00000491233 PDIA6Q15084 440 aa17.88■□□□□ 0.45
COL6A3-211ENST00000491233 PROSER3Q2NL68 480 aa17.88■□□□□ 0.45
COL6A3-211ENST00000491233 CRY2Q49AN0 593 aa17.88■□□□□ 0.45
COL6A3-211ENST00000491233 SUSD4Q5VX71 490 aa17.88■□□□□ 0.45
COL6A3-211ENST00000491233 GIGYF2Q6Y7W6 1299 aaKnown RBP17.88■□□□□ 0.45
COL6A3-211ENST00000491233 ZNF34Q8IZ26 560 aa17.88■□□□□ 0.45
COL6A3-211ENST00000491233 RUNDC1Q96C34 613 aa17.88■□□□□ 0.45
COL6A3-211ENST00000491233 SNED1Q8TER0 1413 aa17.88■□□□□ 0.45
COL6A3-211ENST00000491233 DDNO94850 711 aaPredicted RBP17.87■□□□□ 0.45
COL6A3-211ENST00000491233 NTSR2O95665 410 aa17.87■□□□□ 0.45
COL6A3-211ENST00000491233 ALDH1B1P30837 517 aa17.87■□□□□ 0.45
COL6A3-211ENST00000491233 NECTIN2Q92692 538 aa17.86■□□□□ 0.45
COL6A3-211ENST00000491233 RPGRQ92834 1020 aaKnown RBP17.86■□□□□ 0.45
COL6A3-211ENST00000491233 ZNF277Q9NRM2 450 aaPredicted RBP17.86■□□□□ 0.45
COL6A3-211ENST00000491233 TRIM35Q9UPQ4 493 aa17.86■□□□□ 0.45
COL6A3-211ENST00000491233 KRT24Q2M2I5 525 aa17.85■□□□□ 0.45
COL6A3-211ENST00000491233 RTKN2Q8IZC4 609 aa17.85■□□□□ 0.45
COL6A3-211ENST00000491233 KLRG1Q96E93 195 aa17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms