RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, human

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGB1-208	ENST00000490788	MSX1	P28360	303 aa		4.2	□□□□□ -1.74
HMGB1-208	ENST00000490788	NOS2	P35228	1153 aa		4.2	□□□□□ -1.74
HMGB1-208	ENST00000490788	LBR	Q14739	615 aa	Known RBP	4.2	□□□□□ -1.74
HMGB1-208	ENST00000490788	TEAD4	Q15561	434 aa		4.2	□□□□□ -1.74
HMGB1-208	ENST00000490788	TBCEL	Q5QJ74	424 aa		4.2	□□□□□ -1.74
HMGB1-208	ENST00000490788	GAS2L2	Q8NHY3	880 aa		4.2	□□□□□ -1.74
HMGB1-208	ENST00000490788	SCG3	Q8WXD2	468 aa	Known RBP	4.2	□□□□□ -1.74
HMGB1-208	ENST00000490788	L3MBTL2	Q969R5	705 aa		4.2	□□□□□ -1.74
HMGB1-208	ENST00000490788	TSPAN10	Q9H1Z9	355 aa	Predicted RBP	4.2	□□□□□ -1.74
HMGB1-208	ENST00000490788	RUBCNL	Q9H714	662 aa		4.2	□□□□□ -1.74
HMGB1-208	ENST00000490788	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	4.2	□□□□□ -1.74
HMGB1-208	ENST00000490788	LRRC4B	Q9NT99	713 aa		4.2	□□□□□ -1.74
HMGB1-208	ENST00000490788	PHF24	Q9UPV7	400 aa		4.2	□□□□□ -1.74
HMGB1-208	ENST00000490788	PARP3	Q9Y6F1	533 aa		4.2	□□□□□ -1.74
HMGB1-208	ENST00000490788	ATAD2	Q6PL18	1390 aa		4.19	□□□□□ -1.74
HMGB1-208	ENST00000490788	PPP1R15A	O75807	674 aa	Predicted RBP	4.19	□□□□□ -1.74
HMGB1-208	ENST00000490788	YBX3	P16989	372 aa	Known RBP eCLIP	4.19	□□□□□ -1.74
HMGB1-208	ENST00000490788	GAS6	Q14393	721 aa		4.19	□□□□□ -1.74
HMGB1-208	ENST00000490788	FIGNL1	Q6PIW4	674 aa		4.19	□□□□□ -1.74
HMGB1-208	ENST00000490788	GTPBP3	Q969Y2	492 aa	Known RBP	4.19	□□□□□ -1.74
HMGB1-208	ENST00000490788	DCAF5	Q96JK2	942 aa		4.19	□□□□□ -1.74
HMGB1-208	ENST00000490788	MBIP	Q9NS73	344 aa		4.19	□□□□□ -1.74
HMGB1-208	ENST00000490788	ZDHHC3	Q9NYG2	299 aa		4.19	□□□□□ -1.74
HMGB1-208	ENST00000490788	NSFL1C	Q9UNZ2	370 aa	Known RBP	4.19	□□□□□ -1.74
HMGB1-208	ENST00000490788	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	4.19	□□□□□ -1.74
HMGB1-208	ENST00000490788	LGR5	O75473	907 aa		4.18	□□□□□ -1.74
HMGB1-208	ENST00000490788	ATG7	O95352	703 aa		4.18	□□□□□ -1.74
HMGB1-208	ENST00000490788	BAG6	P46379	1132 aa		4.18	□□□□□ -1.74
HMGB1-208	ENST00000490788	EPHA4	P54764	986 aa		4.18	□□□□□ -1.74
HMGB1-208	ENST00000490788	ELOA	Q14241	798 aa	Known RBP	4.18	□□□□□ -1.74
HMGB1-208	ENST00000490788	DBN1	Q16643	649 aa		4.18	□□□□□ -1.74
HMGB1-208	ENST00000490788	HIF1A	Q16665	826 aa		4.18	□□□□□ -1.74
HMGB1-208	ENST00000490788	SWI5	Q1ZZU3	235 aa		4.18	□□□□□ -1.74
HMGB1-208	ENST00000490788	RHPN1	Q8TCX5	695 aa		4.18	□□□□□ -1.74
HMGB1-208	ENST00000490788	ZNF837	Q96EG3	531 aa	Predicted RBP	4.18	□□□□□ -1.74
HMGB1-208	ENST00000490788	HCN4	Q9Y3Q4	1203 aa		4.18	□□□□□ -1.74
HMGB1-208	ENST00000490788	USP3	Q9Y6I4	520 aa		4.18	□□□□□ -1.74
HMGB1-208	ENST00000490788		A0A1W2PNR3	127 aa		4.17	□□□□□ -1.74
HMGB1-208	ENST00000490788	GPR25	O00155	361 aa		4.17	□□□□□ -1.74
HMGB1-208	ENST00000490788	BCR	P11274	1271 aa		4.17	□□□□□ -1.74
HMGB1-208	ENST00000490788	IGFBP4	P22692	258 aa		4.17	□□□□□ -1.74
HMGB1-208	ENST00000490788	PODN	Q7Z5L7	613 aa		4.17	□□□□□ -1.74
HMGB1-208	ENST00000490788	NLRP8	Q86W28	1048 aa		4.17	□□□□□ -1.74
HMGB1-208	ENST00000490788	NGLY1	Q96IV0	654 aa		4.17	□□□□□ -1.74
HMGB1-208	ENST00000490788	CRISPLD1	Q9H336	500 aa		4.17	□□□□□ -1.74
HMGB1-208	ENST00000490788	C1orf115	Q9H7X2	142 aa		4.17	□□□□□ -1.74
HMGB1-208	ENST00000490788	CUEDC1	Q9NWM3	386 aa	Predicted RBP	4.17	□□□□□ -1.74
HMGB1-208	ENST00000490788	ANKIB1	Q9P2G1	1089 aa		4.17	□□□□□ -1.74
HMGB1-208	ENST00000490788	CNTNAP5	Q8WYK1	1306 aa		4.17	□□□□□ -1.74
HMGB1-208	ENST00000490788	FOXO3	O43524	673 aa		4.16	□□□□□ -1.74
HMGB1-208	ENST00000490788	DKK1	O94907	266 aa		4.16	□□□□□ -1.74
HMGB1-208	ENST00000490788	MX2	P20592	715 aa		4.16	□□□□□ -1.74
HMGB1-208	ENST00000490788	TXLNA	P40222	546 aa		4.16	□□□□□ -1.74
HMGB1-208	ENST00000490788	C1orf53	Q5VUE5	145 aa		4.16	□□□□□ -1.74
HMGB1-208	ENST00000490788	STAG2	Q8N3U4	1231 aa		4.16	□□□□□ -1.74
HMGB1-208	ENST00000490788	STK32A	Q8WU08	396 aa		4.16	□□□□□ -1.74
HMGB1-208	ENST00000490788	ARX	Q96QS3	562 aa		4.16	□□□□□ -1.74
HMGB1-208	ENST00000490788	CFHR5	Q9BXR6	569 aa		4.16	□□□□□ -1.74
HMGB1-208	ENST00000490788	PHACTR1	Q9C0D0	580 aa		4.16	□□□□□ -1.74
HMGB1-208	ENST00000490788	GPC6	Q9Y625	555 aa	Predicted RBP	4.16	□□□□□ -1.74
HMGB1-208	ENST00000490788	IGF1R	P08069	1367 aa		4.15	□□□□□ -1.74
HMGB1-208	ENST00000490788	EML1	O00423	815 aa		4.15	□□□□□ -1.75
HMGB1-208	ENST00000490788	KHNYN	O15037	678 aa	Known RBP	4.15	□□□□□ -1.75
HMGB1-208	ENST00000490788	ATXN7	O15265	892 aa	Predicted RBP	4.15	□□□□□ -1.75
HMGB1-208	ENST00000490788	PRMT3	O60678	531 aa		4.15	□□□□□ -1.75
HMGB1-208	ENST00000490788	ATP4A	P20648	1035 aa		4.15	□□□□□ -1.75
HMGB1-208	ENST00000490788	HIRA	P54198	1017 aa	Predicted RBP	4.15	□□□□□ -1.75
HMGB1-208	ENST00000490788	LRRC69	Q6ZNQ3	347 aa		4.15	□□□□□ -1.75
HMGB1-208	ENST00000490788	ALYREF	Q86V81	257 aa	Known RBP	4.15	□□□□□ -1.75
HMGB1-208	ENST00000490788	ALDH16A1	Q8IZ83	802 aa		4.15	□□□□□ -1.75
HMGB1-208	ENST00000490788	NEDD1	Q8NHV4	660 aa		4.15	□□□□□ -1.75
HMGB1-208	ENST00000490788	ZDHHC1	Q8WTX9	485 aa		4.15	□□□□□ -1.75
HMGB1-208	ENST00000490788	PRIMPOL	Q96LW4	560 aa		4.15	□□□□□ -1.75
HMGB1-208	ENST00000490788	ZIC5	Q96T25	663 aa		4.15	□□□□□ -1.75
HMGB1-208	ENST00000490788	C2orf49	Q9BVC5	232 aa	Predicted RBP	4.15	□□□□□ -1.75
HMGB1-208	ENST00000490788	ZCCHC2	Q9C0B9	1178 aa	Known RBP	4.15	□□□□□ -1.75
HMGB1-208	ENST00000490788	ATXN7L1	Q9ULK2	861 aa	Predicted RBP	4.15	□□□□□ -1.75
HMGB1-208	ENST00000490788	PCDHGC4	Q9Y5F7	938 aa		4.15	□□□□□ -1.75
HMGB1-208	ENST00000490788	DCDC2B	A2VCK2	349 aa		4.14	□□□□□ -1.75
HMGB1-208	ENST00000490788	C21orf2	O43822	256 aa		4.14	□□□□□ -1.75
HMGB1-208	ENST00000490788	BMP4	P12644	408 aa		4.14	□□□□□ -1.75
HMGB1-208	ENST00000490788	WEE1	P30291	646 aa		4.14	□□□□□ -1.75
HMGB1-208	ENST00000490788	MAP2K3	P46734	347 aa		4.14	□□□□□ -1.75
HMGB1-208	ENST00000490788	SRPK2	P78362	688 aa	Known RBP	4.14	□□□□□ -1.75
HMGB1-208	ENST00000490788	PDE4C	Q08493	712 aa		4.14	□□□□□ -1.75
HMGB1-208	ENST00000490788	SH3PXD2A	Q5TCZ1	1133 aa		4.14	□□□□□ -1.75
HMGB1-208	ENST00000490788	TMEM164	Q5U3C3	297 aa		4.14	□□□□□ -1.75
HMGB1-208	ENST00000490788	ZNF295-AS1	Q8N0V1	137 aa		4.14	□□□□□ -1.75
HMGB1-208	ENST00000490788	ACD	Q96AP0	544 aa		4.14	□□□□□ -1.75
HMGB1-208	ENST00000490788	ABHD17A	Q96GS6	310 aa		4.14	□□□□□ -1.75
HMGB1-208	ENST00000490788	ZMIZ1	Q9ULJ6	1067 aa		4.14	□□□□□ -1.75
HMGB1-208	ENST00000490788	PTCD1	O75127	700 aa	Known RBP	4.13	□□□□□ -1.75
HMGB1-208	ENST00000490788	FGFR3	P22607	806 aa		4.13	□□□□□ -1.75
HMGB1-208	ENST00000490788	NEUROD1	Q13562	356 aa		4.13	□□□□□ -1.75
HMGB1-208	ENST00000490788	RTN1	Q16799	776 aa		4.13	□□□□□ -1.75
HMGB1-208	ENST00000490788	B4GALNT3	Q6L9W6	998 aa		4.13	□□□□□ -1.75
HMGB1-208	ENST00000490788	CEP63	Q96MT8	703 aa		4.13	□□□□□ -1.75
HMGB1-208	ENST00000490788	PRR12	Q9ULL5	1215 aa		4.13	□□□□□ -1.75
HMGB1-208	ENST00000490788	MTMR7	Q9Y216	660 aa		4.13	□□□□□ -1.75
HMGB1-208	ENST00000490788	OIP5	O43482	229 aa		4.12	□□□□□ -1.75

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