RNA–Protein interactions for RNA: ENST00000489853.1

SNRNP40-206, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 1,928 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-206ENST00000489853 TMEM259Q4ZIN3 620 aa5.69□□□□□ -1.5
SNRNP40-206ENST00000489853 RSBN1LQ6PCB5 846 aaPredicted RBP5.69□□□□□ -1.5
SNRNP40-206ENST00000489853 TBC1D9Q6ZT07 1266 aa5.69□□□□□ -1.5
SNRNP40-206ENST00000489853 CHD1LQ86WJ1 897 aa5.69□□□□□ -1.5
SNRNP40-206ENST00000489853 GOLGA6L1Q8N7Z2 621 aa5.69□□□□□ -1.5
SNRNP40-206ENST00000489853 ZNF454Q8N9F8 522 aa5.69□□□□□ -1.5
SNRNP40-206ENST00000489853 KCTD12Q96CX2 325 aaKnown RBP5.69□□□□□ -1.5
SNRNP40-206ENST00000489853 KCNF1Q9H3M0 494 aa5.69□□□□□ -1.5
SNRNP40-206ENST00000489853 TNNQ9UQP3 1299 aa5.69□□□□□ -1.5
SNRNP40-206ENST00000489853 ERBINQ96RT1 1412 aa5.69□□□□□ -1.5
SNRNP40-206ENST00000489853 DISP3Q9P2K9 1392 aa5.69□□□□□ -1.5
SNRNP40-206ENST00000489853 LRRIQ1Q96JM4 1722 aa5.68□□□□□ -1.5
SNRNP40-206ENST00000489853 HECW2Q9P2P5 1572 aa5.68□□□□□ -1.5
SNRNP40-206ENST00000489853 RCCD1A6NED2 376 aa5.68□□□□□ -1.5
SNRNP40-206ENST00000489853 TNNT1P13805 278 aa5.68□□□□□ -1.5
SNRNP40-206ENST00000489853 GRIPAP1Q4V328 841 aa5.68□□□□□ -1.5
SNRNP40-206ENST00000489853 KCNK17Q96T54 332 aa5.68□□□□□ -1.5
SNRNP40-206ENST00000489853 AK9Q5TCS8 1911 aa5.68□□□□□ -1.5
SNRNP40-206ENST00000489853 SCAF11Q99590 1463 aaKnown RBP5.68□□□□□ -1.5
SNRNP40-206ENST00000489853 A0A1B0GUL7 405 aa5.68□□□□□ -1.5
SNRNP40-206ENST00000489853 MYO1CO00159 1063 aa5.68□□□□□ -1.5
SNRNP40-206ENST00000489853 HTATSF1O43719 755 aaKnown RBP5.68□□□□□ -1.5
SNRNP40-206ENST00000489853 KIF1CO43896 1103 aaKnown RBP5.68□□□□□ -1.5
SNRNP40-206ENST00000489853 CDC45O75419 566 aa5.68□□□□□ -1.5
SNRNP40-206ENST00000489853 BRD1O95696 1058 aa5.68□□□□□ -1.5
SNRNP40-206ENST00000489853 USP17L8P0C7I0 530 aa5.68□□□□□ -1.5
SNRNP40-206ENST00000489853 CD46P15529 392 aa5.68□□□□□ -1.5
SNRNP40-206ENST00000489853 TPM4P67936 248 aa5.68□□□□□ -1.5
SNRNP40-206ENST00000489853 GPS2Q13227 327 aa5.68□□□□□ -1.5
SNRNP40-206ENST00000489853 NOM1Q5C9Z4 860 aaKnown RBP5.68□□□□□ -1.5
SNRNP40-206ENST00000489853 CCDC183Q5T5S1 534 aa5.68□□□□□ -1.5
SNRNP40-206ENST00000489853 FBXW7Q969H0 707 aa5.68□□□□□ -1.5
SNRNP40-206ENST00000489853 ERO1AQ96HE7 468 aa5.68□□□□□ -1.5
SNRNP40-206ENST00000489853 HMX1Q9NP08 348 aaPredicted RBP5.68□□□□□ -1.5
SNRNP40-206ENST00000489853 ZSCAN21Q9Y5A6 473 aaPredicted RBP5.68□□□□□ -1.5
SNRNP40-206ENST00000489853 MAGI3Q5TCQ9 1506 aa5.68□□□□□ -1.5
SNRNP40-206ENST00000489853 DNMT1P26358 1616 aaKnown RBP5.67□□□□□ -1.5
SNRNP40-206ENST00000489853 KIAA0586Q9BVV6 1533 aa5.67□□□□□ -1.5
SNRNP40-206ENST00000489853 SPTLC1O15269 473 aa5.67□□□□□ -1.5
SNRNP40-206ENST00000489853 GPR37L1O60883 481 aa5.67□□□□□ -1.5
SNRNP40-206ENST00000489853 MX1P20591 662 aa5.67□□□□□ -1.5
SNRNP40-206ENST00000489853 PRSS12P56730 875 aa5.67□□□□□ -1.5
SNRNP40-206ENST00000489853 NAA30Q147X3 362 aaPredicted RBP5.67□□□□□ -1.5
SNRNP40-206ENST00000489853 SYT10Q6XYQ8 523 aa5.67□□□□□ -1.5
SNRNP40-206ENST00000489853 MNS1Q8NEH6 495 aa5.67□□□□□ -1.5
SNRNP40-206ENST00000489853 USP26Q9BXU7 913 aa5.67□□□□□ -1.5
SNRNP40-206ENST00000489853 ZBTB40Q9NUA8 1239 aa5.67□□□□□ -1.5
SNRNP40-206ENST00000489853 ZNF446Q9NWS9 450 aa5.67□□□□□ -1.5
SNRNP40-206ENST00000489853 DONSONQ9NYP3 566 aa5.67□□□□□ -1.5
SNRNP40-206ENST00000489853 POLKQ9UBT6 870 aa5.67□□□□□ -1.5
SNRNP40-206ENST00000489853 JRKLQ9Y4A0 524 aa5.67□□□□□ -1.5
SNRNP40-206ENST00000489853 V9GYY5 206 aaPredicted RBP5.67□□□□□ -1.5
SNRNP40-206ENST00000489853 PRAG1Q86YV5 1406 aa5.67□□□□□ -1.5
SNRNP40-206ENST00000489853 PATL2C9JE40 543 aaKnown RBP5.66□□□□□ -1.5
SNRNP40-206ENST00000489853 COL9A1P20849 921 aa5.66□□□□□ -1.5
SNRNP40-206ENST00000489853 SATB1Q01826 763 aa5.66□□□□□ -1.5
SNRNP40-206ENST00000489853 MLECQ14165 292 aa5.66□□□□□ -1.5
SNRNP40-206ENST00000489853 CCDC27Q2M243 656 aa5.66□□□□□ -1.5
SNRNP40-206ENST00000489853 CT47A1Q5JQC4 288 aaPredicted RBP5.66□□□□□ -1.5
SNRNP40-206ENST00000489853 HDGFL1Q5TGJ6 251 aa5.66□□□□□ -1.5
SNRNP40-206ENST00000489853 FBXO38Q6PIJ6 1188 aa5.66□□□□□ -1.5
SNRNP40-206ENST00000489853 ZGPATQ8N5A5 531 aaKnown RBP5.66□□□□□ -1.5
SNRNP40-206ENST00000489853 HLA-CQ95604 372 aa5.66□□□□□ -1.5
SNRNP40-206ENST00000489853 GCC1Q96CN9 775 aa5.66□□□□□ -1.5
SNRNP40-206ENST00000489853 GJD4Q96KN9 370 aaPredicted RBP5.66□□□□□ -1.5
SNRNP40-206ENST00000489853 LNPKQ9C0E8 428 aa5.66□□□□□ -1.5
SNRNP40-206ENST00000489853 DEF6Q9H4E7 631 aa5.66□□□□□ -1.5
SNRNP40-206ENST00000489853 ATG3Q9NT62 314 aa5.66□□□□□ -1.5
SNRNP40-206ENST00000489853 VPS9D1Q9Y2B5 631 aa5.66□□□□□ -1.5
SNRNP40-206ENST00000489853 KDM5DQ9BY66 1539 aa5.66□□□□□ -1.5
SNRNP40-206ENST00000489853 LAMC1P11047 1609 aa5.66□□□□□ -1.5
SNRNP40-206ENST00000489853 MAGI2Q86UL8 1455 aa5.66□□□□□ -1.5
SNRNP40-206ENST00000489853 ATP8B1O43520 1251 aa5.66□□□□□ -1.5
SNRNP40-206ENST00000489853 LILRB3O75022 631 aa5.66□□□□□ -1.5
SNRNP40-206ENST00000489853 ATP2B1P20020 1258 aa5.66□□□□□ -1.5
SNRNP40-206ENST00000489853 GSCP56915 257 aaPredicted RBP5.66□□□□□ -1.5
SNRNP40-206ENST00000489853 GUCA2AQ02747 115 aa5.66□□□□□ -1.5
SNRNP40-206ENST00000489853 CFAP70Q5T0N1 1121 aa5.66□□□□□ -1.5
SNRNP40-206ENST00000489853 SWT1Q5T5J6 900 aaKnown RBP5.66□□□□□ -1.5
SNRNP40-206ENST00000489853 CEP135Q66GS9 1140 aa5.66□□□□□ -1.5
SNRNP40-206ENST00000489853 KRBA2Q6ZNG9 492 aa5.66□□□□□ -1.5
SNRNP40-206ENST00000489853 CCDC91Q7Z6B0 441 aa5.66□□□□□ -1.5
SNRNP40-206ENST00000489853 C10orf67Q8IYJ2 551 aa5.66□□□□□ -1.5
SNRNP40-206ENST00000489853 TMEM87AQ8NBN3 555 aa5.66□□□□□ -1.5
SNRNP40-206ENST00000489853 NFATC2IPQ8NCF5 419 aa5.66□□□□□ -1.5
SNRNP40-206ENST00000489853 RBM46Q8TBY0 533 aaKnown RBP5.66□□□□□ -1.5
SNRNP40-206ENST00000489853 ZDHHC16Q969W1 377 aa5.66□□□□□ -1.5
SNRNP40-206ENST00000489853 ASXL2Q76L83 1435 aa5.65□□□□□ -1.5
SNRNP40-206ENST00000489853 PLB1Q6P1J6 1458 aa5.65□□□□□ -1.5
SNRNP40-206ENST00000489853 WDR7Q9Y4E6 1490 aa5.65□□□□□ -1.5
SNRNP40-206ENST00000489853 CFAP65Q6ZU64 1925 aaKnown RBP5.65□□□□□ -1.5
SNRNP40-206ENST00000489853 HCLS1P14317 486 aaPredicted RBP5.65□□□□□ -1.51
SNRNP40-206ENST00000489853 H2AFXP16104 143 aaPredicted RBP5.65□□□□□ -1.51
SNRNP40-206ENST00000489853 MCM2P49736 904 aa5.65□□□□□ -1.51
SNRNP40-206ENST00000489853 VAC14Q08AM6 782 aa5.65□□□□□ -1.51
SNRNP40-206ENST00000489853 ZSCAN26Q16670 478 aa5.65□□□□□ -1.51
SNRNP40-206ENST00000489853 TPD52L1Q16890 204 aaPredicted RBP5.65□□□□□ -1.51
SNRNP40-206ENST00000489853 HSP90AB3PQ58FF7 597 aa5.65□□□□□ -1.51
SNRNP40-206ENST00000489853 RPAINQ86UA6 219 aa5.65□□□□□ -1.51
SNRNP40-206ENST00000489853 USP48Q86UV5 1035 aa5.65□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms