RNA–Protein interactions for RNA: ENST00000489048.1

NEB-215, Transcript of nebulin, humanhuman

TSL 1 (best)

Gene NEB, Length 2,738 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEB-215ENST00000489048 MTX1Q13505 466 aa13.16□□□□□ -0.3
NEB-215ENST00000489048 FOXD4L6Q3SYB3 417 aaPredicted RBP13.16□□□□□ -0.3
NEB-215ENST00000489048 FOXD4L3Q6VB84 417 aaPredicted RBP13.16□□□□□ -0.3
NEB-215ENST00000489048 NECTIN2Q92692 538 aa13.16□□□□□ -0.3
NEB-215ENST00000489048 CHMP4AQ9BY43 222 aa13.16□□□□□ -0.3
NEB-215ENST00000489048 NUTM2FA1L443 756 aa13.16□□□□□ -0.3
NEB-215ENST00000489048 LTKP29376 864 aa13.16□□□□□ -0.3
NEB-215ENST00000489048 BEND3Q5T5X7 828 aa13.16□□□□□ -0.3
NEB-215ENST00000489048 PHAXQ9H814 394 aaKnown RBP13.16□□□□□ -0.3
NEB-215ENST00000489048 MTMR6Q9Y217 621 aa13.16□□□□□ -0.3
NEB-215ENST00000489048 SRGAP3O43295 1099 aa13.15□□□□□ -0.3
NEB-215ENST00000489048 TPM3P06753 285 aa13.15□□□□□ -0.3
NEB-215ENST00000489048 RUFY2Q8WXA3 655 aa13.15□□□□□ -0.3
NEB-215ENST00000489048 ZSWIM6Q9HCJ5 1215 aa13.15□□□□□ -0.3
NEB-215ENST00000489048 SLIT1O75093 1534 aa13.15□□□□□ -0.3
NEB-215ENST00000489048 MAP4K4O95819 1239 aaPredicted RBP13.15□□□□□ -0.3
NEB-215ENST00000489048 RGPD8O14715 1765 aaPredicted RBP13.14□□□□□ -0.31
NEB-215ENST00000489048 SMAP1Q8IYB5 467 aaPredicted RBP13.14□□□□□ -0.31
NEB-215ENST00000489048 ARHGAP23Q9P227 1491 aa13.14□□□□□ -0.31
NEB-215ENST00000489048 LARGE1O95461 756 aa13.14□□□□□ -0.31
NEB-215ENST00000489048 CASTP20810 708 aaKnown RBP13.14□□□□□ -0.31
NEB-215ENST00000489048 GJB2P29033 226 aa13.13□□□□□ -0.31
NEB-215ENST00000489048 NGDNQ8NEJ9 315 aaKnown RBP13.13□□□□□ -0.31
NEB-215ENST00000489048 DNAAF4Q8WXU2 420 aa13.13□□□□□ -0.31
NEB-215ENST00000489048 CCDC171Q6TFL3 1326 aa13.13□□□□□ -0.31
NEB-215ENST00000489048 NBPF7P0C2Y1 421 aaPredicted RBP13.13□□□□□ -0.31
NEB-215ENST00000489048 EIF4A1P60842 406 aaKnown RBP13.13□□□□□ -0.31
NEB-215ENST00000489048 ST3GAL1Q11201 340 aa13.13□□□□□ -0.31
NEB-215ENST00000489048 CWC27Q6UX04 472 aaKnown RBP13.13□□□□□ -0.31
NEB-215ENST00000489048 CCDC94Q9BW85 323 aaPredicted RBP13.13□□□□□ -0.31
NEB-215ENST00000489048 TTC12Q9H892 705 aaPredicted RBP13.13□□□□□ -0.31
NEB-215ENST00000489048 SNRKQ9NRH2 765 aa13.13□□□□□ -0.31
NEB-215ENST00000489048 PDRG1Q9NUG6 133 aa13.13□□□□□ -0.31
NEB-215ENST00000489048 FIBPO43427 364 aa13.12□□□□□ -0.31
NEB-215ENST00000489048 ADGRL3Q9HAR2 1447 aa13.12□□□□□ -0.31
NEB-215ENST00000489048 ELP1O95163 1332 aa13.12□□□□□ -0.31
NEB-215ENST00000489048 NECTIN1Q15223 517 aa13.12□□□□□ -0.31
NEB-215ENST00000489048 DNTTIP2Q5QJE6 756 aaKnown RBP13.12□□□□□ -0.31
NEB-215ENST00000489048 ZNF830Q96NB3 372 aaPredicted RBP13.12□□□□□ -0.31
NEB-215ENST00000489048 DIAPH3Q9NSV4 1193 aa13.12□□□□□ -0.31
NEB-215ENST00000489048 SPG7Q9UQ90 795 aa13.12□□□□□ -0.31
NEB-215ENST00000489048 AMOTL2Q9Y2J4 779 aa13.12□□□□□ -0.31
NEB-215ENST00000489048 TBX22Q9Y458 520 aa13.12□□□□□ -0.31
NEB-215ENST00000489048 ADCY9O60503 1353 aa13.12□□□□□ -0.31
NEB-215ENST00000489048 DNM1Q05193 864 aaKnown RBP13.12□□□□□ -0.31
NEB-215ENST00000489048 CCDC83Q8IWF9 413 aa13.12□□□□□ -0.31
NEB-215ENST00000489048 KIAA1524Q8TCG1 905 aa13.12□□□□□ -0.31
NEB-215ENST00000489048 PRDM4Q9UKN5 801 aa13.12□□□□□ -0.31
NEB-215ENST00000489048 CYP46A1Q9Y6A2 500 aa13.12□□□□□ -0.31
NEB-215ENST00000489048 LMO7Q8WWI1 1683 aa13.11□□□□□ -0.31
NEB-215ENST00000489048 NLRP6P59044 892 aa13.11□□□□□ -0.31
NEB-215ENST00000489048 PTH1RQ03431 593 aa13.11□□□□□ -0.31
NEB-215ENST00000489048 GIMAP6Q6P9H5 292 aa13.11□□□□□ -0.31
NEB-215ENST00000489048 ECHDC1Q9NTX5 307 aa13.11□□□□□ -0.31
NEB-215ENST00000489048 AP5Z1O43299 807 aa13.11□□□□□ -0.31
NEB-215ENST00000489048 ADCK5Q3MIX3 580 aa13.11□□□□□ -0.31
NEB-215ENST00000489048 ERC1Q8IUD2 1116 aa13.11□□□□□ -0.31
NEB-215ENST00000489048 ZNF710Q8N1W2 664 aa13.11□□□□□ -0.31
NEB-215ENST00000489048 JAKMIP1Q96N16 626 aaKnown RBP13.11□□□□□ -0.31
NEB-215ENST00000489048 ALDH8A1Q9H2A2 487 aaPredicted RBP13.11□□□□□ -0.31
NEB-215ENST00000489048 CLASRPQ8N2M8 674 aaKnown RBP13.1□□□□□ -0.31
NEB-215ENST00000489048 EVI5LQ96CN4 794 aa13.1□□□□□ -0.31
NEB-215ENST00000489048 ALDH1L1O75891 902 aa13.1□□□□□ -0.31
NEB-215ENST00000489048 CCDC192P0DO97 292 aa13.1□□□□□ -0.31
NEB-215ENST00000489048 PRPF40BQ6NWY9 871 aaKnown RBP13.1□□□□□ -0.31
NEB-215ENST00000489048 GPATCH3Q96I76 525 aa13.1□□□□□ -0.31
NEB-215ENST00000489048 KCNF1Q9H3M0 494 aa13.1□□□□□ -0.31
NEB-215ENST00000489048 CHPF2Q9P2E5 772 aa13.1□□□□□ -0.31
NEB-215ENST00000489048 PI4KAP2A4QPH2 592 aa13.09□□□□□ -0.31
NEB-215ENST00000489048 HIP1O00291 1037 aa13.09□□□□□ -0.31
NEB-215ENST00000489048 CPA1P15085 419 aa13.09□□□□□ -0.31
NEB-215ENST00000489048 ME3Q16798 604 aa13.09□□□□□ -0.31
NEB-215ENST00000489048 PI4KAP1Q8N8J0 262 aa13.09□□□□□ -0.31
NEB-215ENST00000489048 LARP6Q9BRS8 491 aaKnown RBP13.09□□□□□ -0.31
NEB-215ENST00000489048 GOLGA6L6A8MZA4 724 aa13.09□□□□□ -0.31
NEB-215ENST00000489048 FAM200AQ8TCP9 573 aa13.09□□□□□ -0.31
NEB-215ENST00000489048 JCADQ9P266 1359 aa13.09□□□□□ -0.31
NEB-215ENST00000489048 OVOS2A0A0G2JMS6 1433 aa13.08□□□□□ -0.32
NEB-215ENST00000489048 MAP4K1Q92918 833 aa13.08□□□□□ -0.32
NEB-215ENST00000489048 HDAC5Q9UQL6 1122 aa13.08□□□□□ -0.32
NEB-215ENST00000489048 KIF3AQ9Y496 699 aa13.08□□□□□ -0.32
NEB-215ENST00000489048 PHRF1Q9P1Y6 1649 aaKnown RBP13.08□□□□□ -0.32
NEB-215ENST00000489048 ZKSCAN1P17029 563 aaPredicted RBP13.08□□□□□ -0.32
NEB-215ENST00000489048 KRT85P78386 507 aa13.08□□□□□ -0.32
NEB-215ENST00000489048 SLC26A8Q96RN1 970 aa13.08□□□□□ -0.32
NEB-215ENST00000489048 EID1Q9Y6B2 187 aa13.08□□□□□ -0.32
NEB-215ENST00000489048 LTN1O94822 1766 aa13.07□□□□□ -0.32
NEB-215ENST00000489048 NFAT5O94916 1531 aa13.07□□□□□ -0.32
NEB-215ENST00000489048 CREB3L3Q68CJ9 461 aa13.07□□□□□ -0.32
NEB-215ENST00000489048 RBM43Q6ZSC3 357 aaKnown RBP13.07□□□□□ -0.32
NEB-215ENST00000489048 C17orf53Q8N3J3 647 aaPredicted RBP13.07□□□□□ -0.32
NEB-215ENST00000489048 CERKQ8TCT0 537 aa13.07□□□□□ -0.32
NEB-215ENST00000489048 EIF2S2P20042 333 aaKnown RBP13.07□□□□□ -0.32
NEB-215ENST00000489048 PDCP20941 246 aa13.07□□□□□ -0.32
NEB-215ENST00000489048 PSMA5P28066 241 aa13.07□□□□□ -0.32
NEB-215ENST00000489048 TTC6Q86TZ1 520 aa13.07□□□□□ -0.32
NEB-215ENST00000489048 TPCN1Q9ULQ1 816 aa13.07□□□□□ -0.32
NEB-215ENST00000489048 PYCARDQ9ULZ3 195 aa13.07□□□□□ -0.32
NEB-215ENST00000489048 RBM8AQ9Y5S9 174 aaKnown RBP13.07□□□□□ -0.32
NEB-215ENST00000489048 MRC1P22897 1456 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms