RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	C4A	P0C0L4	1744 aa		11.97	□□□□□ -0.49
USP4-213	ENST00000488520	COL5A3	P25940	1745 aa	Predicted RBP	11.97	□□□□□ -0.49
USP4-213	ENST00000488520	PPM1G	O15355	546 aa	Predicted RBP	11.96	□□□□□ -0.49
USP4-213	ENST00000488520	EMILIN1	Q9Y6C2	1016 aa		11.96	□□□□□ -0.49
USP4-213	ENST00000488520	HMGB2	P26583	209 aa	Known RBP	11.95	□□□□□ -0.5
USP4-213	ENST00000488520	LINC00116	Q8NCU8	138 aa		11.95	□□□□□ -0.5
USP4-213	ENST00000488520	LOC102724428	A0A0B4J2F2	783 aa		11.94	□□□□□ -0.5
USP4-213	ENST00000488520	SIK1	P57059	783 aa		11.94	□□□□□ -0.5
USP4-213	ENST00000488520	E2F4	Q16254	413 aa		11.94	□□□□□ -0.5
USP4-213	ENST00000488520	PPP4R3B	Q5MIZ7	849 aa		11.94	□□□□□ -0.5
USP4-213	ENST00000488520	ASAP1	Q9ULH1	1129 aa		11.94	□□□□□ -0.5
USP4-213	ENST00000488520	WDR90	Q96KV7	1748 aa		11.94	□□□□□ -0.5
USP4-213	ENST00000488520	NSD3	Q9BZ95	1437 aa		11.94	□□□□□ -0.5
USP4-213	ENST00000488520	CIC	Q96RK0	1608 aa	Predicted RBP	11.93	□□□□□ -0.5
USP4-213	ENST00000488520	GNPAT	O15228	680 aa		11.93	□□□□□ -0.5
USP4-213	ENST00000488520	SSFA2	P28290	1259 aa		11.93	□□□□□ -0.5
USP4-213	ENST00000488520	ATP6V1A	P38606	617 aa		11.93	□□□□□ -0.5
USP4-213	ENST00000488520	PBX2	P40425	430 aa		11.93	□□□□□ -0.5
USP4-213	ENST00000488520	SPG7	Q9UQ90	795 aa		11.93	□□□□□ -0.5
USP4-213	ENST00000488520	ZNF831	Q5JPB2	1677 aa		11.92	□□□□□ -0.5
USP4-213	ENST00000488520	DPYSL4	O14531	572 aa		11.92	□□□□□ -0.5
USP4-213	ENST00000488520	ITPK1	Q13572	414 aa		11.92	□□□□□ -0.5
USP4-213	ENST00000488520	TMOD3	Q9NYL9	352 aa		11.92	□□□□□ -0.5
USP4-213	ENST00000488520	KIF24	Q5T7B8	1368 aa		11.92	□□□□□ -0.5
USP4-213	ENST00000488520	MMP10	P09238	476 aa		11.91	□□□□□ -0.5
USP4-213	ENST00000488520	ZNF454	Q8N9F8	522 aa		11.91	□□□□□ -0.5
USP4-213	ENST00000488520	EYA1	Q99502	592 aa		11.91	□□□□□ -0.5
USP4-213	ENST00000488520	CARD14	Q9BXL6	1004 aa		11.91	□□□□□ -0.5
USP4-213	ENST00000488520	AFDN	P55196	1824 aa	Known RBP	11.9	□□□□□ -0.5
USP4-213	ENST00000488520	PXDNL	A1KZ92	1463 aa		11.9	□□□□□ -0.5
USP4-213	ENST00000488520		A0A0G2JLW4	131 aa		11.9	□□□□□ -0.5
USP4-213	ENST00000488520	NCAPD2	Q15021	1401 aa		11.9	□□□□□ -0.5
USP4-213	ENST00000488520	BCS1L	Q9Y276	419 aa		11.9	□□□□□ -0.5
USP4-213	ENST00000488520	SCN11A	Q9UI33	1791 aa		11.9	□□□□□ -0.51
USP4-213	ENST00000488520	FOSB	P53539	338 aa		11.89	□□□□□ -0.51
USP4-213	ENST00000488520	POTEE	Q6S8J3	1075 aa		11.89	□□□□□ -0.51
USP4-213	ENST00000488520	SPNS2	Q8IVW8	549 aa		11.89	□□□□□ -0.51
USP4-213	ENST00000488520	IFNL2	Q8IZJ0	200 aa		11.89	□□□□□ -0.51
USP4-213	ENST00000488520	ATG3	Q9NT62	314 aa		11.89	□□□□□ -0.51
USP4-213	ENST00000488520	PHKG2	P15735	406 aa		11.88	□□□□□ -0.51
USP4-213	ENST00000488520	ARHGAP27	Q6ZUM4	889 aa		11.88	□□□□□ -0.51
USP4-213	ENST00000488520	CACNA1S	Q13698	1873 aa		11.87	□□□□□ -0.51
USP4-213	ENST00000488520	TJP1	Q07157	1748 aa		11.87	□□□□□ -0.51
USP4-213	ENST00000488520	TNNT2	P45379	298 aa	Predicted RBP	11.87	□□□□□ -0.51
USP4-213	ENST00000488520	TRAPPC3L	Q5T215	181 aa		11.87	□□□□□ -0.51
USP4-213	ENST00000488520	RTCB	Q9Y3I0	505 aa	Known RBP	11.87	□□□□□ -0.51
USP4-213	ENST00000488520	WASHC2A	Q641Q2	1341 aa		11.86	□□□□□ -0.51
USP4-213	ENST00000488520	ARHGAP33	O14559	1287 aa		11.86	□□□□□ -0.51
USP4-213	ENST00000488520	FCHSD2	O94868	740 aa		11.86	□□□□□ -0.51
USP4-213	ENST00000488520	DPEP1	P16444	411 aa		11.86	□□□□□ -0.51
USP4-213	ENST00000488520	ARHGEF1	Q92888	912 aa	Known RBP	11.86	□□□□□ -0.51
USP4-213	ENST00000488520	SLC4A9	Q96Q91	983 aa		11.86	□□□□□ -0.51
USP4-213	ENST00000488520	NMRK2	Q9NPI5	230 aa		11.86	□□□□□ -0.51
USP4-213	ENST00000488520	TNRC6C	Q9HCJ0	1690 aa	Known RBP	11.85	□□□□□ -0.51
USP4-213	ENST00000488520	TOMM70	O94826	608 aa		11.85	□□□□□ -0.51
USP4-213	ENST00000488520	APLP1	P51693	650 aa		11.85	□□□□□ -0.51
USP4-213	ENST00000488520	TGFB2	P61812	414 aa		11.85	□□□□□ -0.51
USP4-213	ENST00000488520	LSM11	P83369	360 aa	Known RBP eCLIP	11.85	□□□□□ -0.51
USP4-213	ENST00000488520	NLGN1	Q8N2Q7	840 aa		11.85	□□□□□ -0.51
USP4-213	ENST00000488520	POLK	Q9UBT6	870 aa		11.85	□□□□□ -0.51
USP4-213	ENST00000488520	ARIH1	Q9Y4X5	557 aa	Predicted RBP	11.85	□□□□□ -0.51
USP4-213	ENST00000488520	C10orf71	Q711Q0	1435 aa		11.85	□□□□□ -0.51
USP4-213	ENST00000488520	KDR	P35968	1356 aa		11.84	□□□□□ -0.51
USP4-213	ENST00000488520	PCNT	O95613	3336 aa		11.84	□□□□□ -0.51
USP4-213	ENST00000488520	RFC4	P35249	363 aa		11.84	□□□□□ -0.51
USP4-213	ENST00000488520	EIF4A2	Q14240	407 aa	Known RBP	11.84	□□□□□ -0.51
USP4-213	ENST00000488520	CCDC87	Q9NVE4	849 aa		11.84	□□□□□ -0.51
USP4-213	ENST00000488520	PARP3	Q9Y6F1	533 aa		11.84	□□□□□ -0.51
USP4-213	ENST00000488520	DLEC1	Q9Y238	1755 aa		11.83	□□□□□ -0.52
USP4-213	ENST00000488520	GYS1	P13807	737 aa		11.83	□□□□□ -0.52
USP4-213	ENST00000488520	HTRA3	P83110	453 aa		11.83	□□□□□ -0.52
USP4-213	ENST00000488520	PDIA6	Q15084	440 aa		11.83	□□□□□ -0.52
USP4-213	ENST00000488520	DNAJC5G	Q8N7S2	189 aa		11.83	□□□□□ -0.52
USP4-213	ENST00000488520	DICER1	Q9UPY3	1922 aa	Known RBP	11.83	□□□□□ -0.52
USP4-213	ENST00000488520	KCP	Q6ZWJ8	1503 aa		11.82	□□□□□ -0.52
USP4-213	ENST00000488520	ADAMTS7	Q9UKP4	1686 aa		11.82	□□□□□ -0.52
USP4-213	ENST00000488520	SPDYE16	A6NNV3	312 aa	Predicted RBP	11.82	□□□□□ -0.52
USP4-213	ENST00000488520	RPS6KA4	O75676	772 aa		11.82	□□□□□ -0.52
USP4-213	ENST00000488520	C9orf131	Q5VYM1	1079 aa		11.82	□□□□□ -0.52
USP4-213	ENST00000488520	ANKRD13D	Q6ZTN6	518 aa		11.82	□□□□□ -0.52
USP4-213	ENST00000488520	ZDHHC16	Q969W1	377 aa		11.82	□□□□□ -0.52
USP4-213	ENST00000488520	BCL2L12	Q9HB09	334 aa		11.82	□□□□□ -0.52
USP4-213	ENST00000488520	TIAM2	Q8IVF5	1701 aa		11.82	□□□□□ -0.52
USP4-213	ENST00000488520	KDM6A	O15550	1401 aa	Predicted RBP	11.81	□□□□□ -0.52
USP4-213	ENST00000488520	ERVV-2	B6SEH9	535 aa		11.81	□□□□□ -0.52
USP4-213	ENST00000488520	PTCD1	O75127	700 aa	Known RBP	11.81	□□□□□ -0.52
USP4-213	ENST00000488520	KCNA3	P22001	575 aa		11.81	□□□□□ -0.52
USP4-213	ENST00000488520	CABP4	P57796	275 aa		11.81	□□□□□ -0.52
USP4-213	ENST00000488520	RC3H1	Q5TC82	1133 aa	Known RBP	11.81	□□□□□ -0.52
USP4-213	ENST00000488520	C16orf71	Q8IYS4	520 aa	Predicted RBP	11.81	□□□□□ -0.52
USP4-213	ENST00000488520	SRP68	Q9UHB9	627 aa	Known RBP	11.81	□□□□□ -0.52
USP4-213	ENST00000488520	KIF7	Q2M1P5	1343 aa		11.81	□□□□□ -0.52
USP4-213	ENST00000488520	CNTNAP4	Q9C0A0	1308 aa		11.81	□□□□□ -0.52
USP4-213	ENST00000488520	PSEN2	P49810	448 aa		11.8	□□□□□ -0.52
USP4-213	ENST00000488520	MMRN1	Q13201	1228 aa		11.8	□□□□□ -0.52
USP4-213	ENST00000488520	ZNF530	Q6P9A1	599 aa	Predicted RBP	11.8	□□□□□ -0.52
USP4-213	ENST00000488520	DCAF5	Q96JK2	942 aa		11.8	□□□□□ -0.52
USP4-213	ENST00000488520	PANK3	Q9H999	370 aa		11.8	□□□□□ -0.52
USP4-213	ENST00000488520	KNSTRN	Q9Y448	316 aa		11.8	□□□□□ -0.52
USP4-213	ENST00000488520	PCDHGA10	Q9Y5H3	936 aa		11.8	□□□□□ -0.52

Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms