RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 LMO7Q8WWI1 1683 aa21.66■■□□□ 1.06
VIM-206ENST00000487938 DTNBO60941 627 aa21.66■■□□□ 1.06
VIM-206ENST00000487938 PTH1RQ03431 593 aa21.66■■□□□ 1.06
VIM-206ENST00000487938 USP48Q86UV5 1035 aa21.66■■□□□ 1.06
VIM-206ENST00000487938 ZSCAN30Q86W11 494 aa21.66■■□□□ 1.06
VIM-206ENST00000487938 WDR33Q9C0J8 1336 aaKnown RBP21.66■■□□□ 1.06
VIM-206ENST00000487938 USP42Q9H9J4 1324 aaKnown RBP21.66■■□□□ 1.06
VIM-206ENST00000487938 ALDH1L1O75891 902 aa21.66■■□□□ 1.06
VIM-206ENST00000487938 IFIT2P09913 472 aaKnown RBP21.66■■□□□ 1.06
VIM-206ENST00000487938 TPRNQ4KMQ1 711 aa21.66■■□□□ 1.06
VIM-206ENST00000487938 RUFY3Q7L099 469 aa21.66■■□□□ 1.06
VIM-206ENST00000487938 RNF214Q8ND24 703 aa21.66■■□□□ 1.06
VIM-206ENST00000487938 ECHDC1Q9NTX5 307 aa21.65■■□□□ 1.06
VIM-206ENST00000487938 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP21.65■■□□□ 1.06
VIM-206ENST00000487938 CASTP20810 708 aaKnown RBP21.64■■□□□ 1.06
VIM-206ENST00000487938 AACSQ86V21 672 aa21.64■■□□□ 1.05
VIM-206ENST00000487938 SUCLG2Q96I99 432 aa21.64■■□□□ 1.05
VIM-206ENST00000487938 LIMCH1Q9UPQ0 1083 aa21.64■■□□□ 1.05
VIM-206ENST00000487938 RPAP1Q9BWH6 1393 aaPredicted RBP21.63■■□□□ 1.05
VIM-206ENST00000487938 DDX54Q8TDD1 881 aaKnown RBP21.63■■□□□ 1.05
VIM-206ENST00000487938 MSNP26038 577 aaKnown RBP21.62■■□□□ 1.05
VIM-206ENST00000487938 ADCK5Q3MIX3 580 aa21.62■■□□□ 1.05
VIM-206ENST00000487938 PRPF40BQ6NWY9 871 aaKnown RBP21.62■■□□□ 1.05
VIM-206ENST00000487938 KAZALD1Q96I82 304 aa21.62■■□□□ 1.05
VIM-206ENST00000487938 HYPKQ9NX55 129 aa21.62■■□□□ 1.05
VIM-206ENST00000487938 LARGE1O95461 756 aa21.62■■□□□ 1.05
VIM-206ENST00000487938 SLC39A6Q13433 755 aa21.62■■□□□ 1.05
VIM-206ENST00000487938 RUFY2Q8WXA3 655 aa21.62■■□□□ 1.05
VIM-206ENST00000487938 PDLIM2Q96JY6 352 aa21.62■■□□□ 1.05
VIM-206ENST00000487938 BICC1Q9H694 974 aaKnown RBP21.62■■□□□ 1.05
VIM-206ENST00000487938 HEG1Q9ULI3 1381 aa21.61■■□□□ 1.05
VIM-206ENST00000487938 GRM8O00222 908 aa21.61■■□□□ 1.05
VIM-206ENST00000487938 GPATCH3Q96I76 525 aa21.61■■□□□ 1.05
VIM-206ENST00000487938 CCDC8Q9H0W5 538 aaPredicted RBP21.61■■□□□ 1.05
VIM-206ENST00000487938 SASH1O94885 1247 aa21.6■■□□□ 1.05
VIM-206ENST00000487938 ERC1Q8IUD2 1116 aa21.6■■□□□ 1.05
VIM-206ENST00000487938 LINS1Q8NG48 757 aa21.6■■□□□ 1.05
VIM-206ENST00000487938 JAKMIP1Q96N16 626 aaKnown RBP21.6■■□□□ 1.05
VIM-206ENST00000487938 CNPY2Q9Y2B0 182 aa21.6■■□□□ 1.05
VIM-206ENST00000487938 ZC3H6P61129 1189 aaKnown RBP21.6■■□□□ 1.05
VIM-206ENST00000487938 KRT28Q7Z3Y7 464 aa21.6■■□□□ 1.05
VIM-206ENST00000487938 SIL1Q9H173 461 aa21.6■■□□□ 1.05
VIM-206ENST00000487938 MYL6BP14649 208 aa21.59■■□□□ 1.05
VIM-206ENST00000487938 SYT1P21579 422 aa21.59■■□□□ 1.05
VIM-206ENST00000487938 G3BP1Q13283 466 aaKnown RBP eCLIP21.59■■□□□ 1.05
VIM-206ENST00000487938 PDIA6Q15084 440 aa21.59■■□□□ 1.05
VIM-206ENST00000487938 PROSER2Q86WR7 435 aaPredicted RBP21.59■■□□□ 1.05
VIM-206ENST00000487938 EAF2Q96CJ1 260 aaPredicted RBP21.59■■□□□ 1.05
VIM-206ENST00000487938 SMC3Q9UQE7 1217 aa21.59■■□□□ 1.05
VIM-206ENST00000487938 TCHHQ07283 1943 aa21.59■■□□□ 1.05
VIM-206ENST00000487938 ZSCAN22P10073 491 aaPredicted RBP21.59■■□□□ 1.05
VIM-206ENST00000487938 RIC3Q7Z5B4 369 aa21.59■■□□□ 1.05
VIM-206ENST00000487938 EVI5LQ96CN4 794 aa21.59■■□□□ 1.05
VIM-206ENST00000487938 TSPY26PQ9H489 355 aa21.59■■□□□ 1.05
VIM-206ENST00000487938 DDX21Q9NR30 783 aaKnown RBP eCLIP21.59■■□□□ 1.05
VIM-206ENST00000487938 ZSCAN21Q9Y5A6 473 aaPredicted RBP21.59■■□□□ 1.05
VIM-206ENST00000487938 NCAPD2Q15021 1401 aa21.59■■□□□ 1.05
VIM-206ENST00000487938 STX6O43752 255 aa21.58■■□□□ 1.05
VIM-206ENST00000487938 CCDC83Q8IWF9 413 aa21.58■■□□□ 1.05
VIM-206ENST00000487938 KLHDC4Q8TBB5 520 aa21.58■■□□□ 1.05
VIM-206ENST00000487938 SYAP1Q96A49 352 aaPredicted RBP21.58■■□□□ 1.05
VIM-206ENST00000487938 FAM227BQ96M60 508 aa21.58■■□□□ 1.05
VIM-206ENST00000487938 PDRG1Q9NUG6 133 aa21.58■■□□□ 1.05
VIM-206ENST00000487938 DDX58O95786 925 aaKnown RBP21.58■■□□□ 1.04
VIM-206ENST00000487938 TLR7Q9NYK1 1049 aaKnown RBP21.58■■□□□ 1.04
VIM-206ENST00000487938 HDAC5Q9UQL6 1122 aa21.58■■□□□ 1.04
VIM-206ENST00000487938 PHRF1Q9P1Y6 1649 aaKnown RBP21.57■■□□□ 1.04
VIM-206ENST00000487938 IGKV5-2P06315 115 aa21.57■■□□□ 1.04
VIM-206ENST00000487938 BOLA2Q9H3K6 86 aa21.56■■□□□ 1.04
VIM-206ENST00000487938 EIF2AK3Q9NZJ5 1116 aaKnown RBP21.56■■□□□ 1.04
VIM-206ENST00000487938 NMIQ13287 307 aaPredicted RBP21.55■■□□□ 1.04
VIM-206ENST00000487938 HS1BP3Q53T59 392 aa21.55■■□□□ 1.04
VIM-206ENST00000487938 CYP46A1Q9Y6A2 500 aa21.55■■□□□ 1.04
VIM-206ENST00000487938 CRYBG1Q9Y4K1 1723 aa21.55■■□□□ 1.04
VIM-206ENST00000487938 KCNJ4P48050 445 aa21.55■■□□□ 1.04
VIM-206ENST00000487938 NECTIN1Q15223 517 aa21.55■■□□□ 1.04
VIM-206ENST00000487938 ZNF790Q6PG37 636 aa21.55■■□□□ 1.04
VIM-206ENST00000487938 NFATC2IPQ8NCF5 419 aa21.55■■□□□ 1.04
VIM-206ENST00000487938 ZSWIM6Q9HCJ5 1215 aa21.55■■□□□ 1.04
VIM-206ENST00000487938 NOL7Q9UMY1 257 aaKnown RBP21.55■■□□□ 1.04
VIM-206ENST00000487938 GJB2P29033 226 aa21.54■■□□□ 1.04
VIM-206ENST00000487938 VPS53Q5VIR6 699 aa21.54■■□□□ 1.04
VIM-206ENST00000487938 JARID2Q92833 1246 aaPredicted RBP21.54■■□□□ 1.04
VIM-206ENST00000487938 RBM8AQ9Y5S9 174 aaKnown RBP21.54■■□□□ 1.04
VIM-206ENST00000487938 SLIT3O75094 1523 aa21.54■■□□□ 1.04
VIM-206ENST00000487938 UTYO14607 1347 aa21.54■■□□□ 1.04
VIM-206ENST00000487938 CCDC171Q6TFL3 1326 aa21.54■■□□□ 1.04
VIM-206ENST00000487938 F13A1P00488 732 aa21.54■■□□□ 1.04
VIM-206ENST00000487938 NLRP2Q9NX02 1062 aa21.54■■□□□ 1.04
VIM-206ENST00000487938 OVOS2A0A0G2JMS6 1433 aa21.53■■□□□ 1.04
VIM-206ENST00000487938 PIP4K2AP48426 406 aaPredicted RBP21.53■■□□□ 1.04
VIM-206ENST00000487938 COL9A3Q14050 684 aaPredicted RBP21.53■■□□□ 1.04
VIM-206ENST00000487938 NECAB1Q8N987 351 aa21.53■■□□□ 1.04
VIM-206ENST00000487938 XAGE3Q8WTP9 111 aa21.53■■□□□ 1.04
VIM-206ENST00000487938 CREB3L3Q68CJ9 461 aa21.53■■□□□ 1.04
VIM-206ENST00000487938 MYD88Q99836 296 aa21.53■■□□□ 1.04
VIM-206ENST00000487938 C19orf44Q9H6X5 657 aa21.53■■□□□ 1.04
VIM-206ENST00000487938 FIBPO43427 364 aa21.52■■□□□ 1.04
VIM-206ENST00000487938 ME3Q16798 604 aa21.52■■□□□ 1.04
VIM-206ENST00000487938 EPHA10Q5JZY3 1008 aa21.52■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms