RNA–Protein interactions for RNA: ENST00000485780.1

SHROOM3-207, Transcript of shroom family member 3, humanhuman

TSL 2

Gene SHROOM3, Length 531 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-207ENST00000485780 SRP68Q9UHB9 627 aaKnown RBP12.02□□□□□ -0.49
SHROOM3-207ENST00000485780 USP42Q9H9J4 1324 aaKnown RBP12.02□□□□□ -0.49
SHROOM3-207ENST00000485780 NRXN2Q9P2S2 1712 aa12.01□□□□□ -0.49
SHROOM3-207ENST00000485780 N4BP2Q86UW6 1770 aaPredicted RBP12.01□□□□□ -0.49
SHROOM3-207ENST00000485780 ELL2O00472 640 aaPredicted RBP12.01□□□□□ -0.49
SHROOM3-207ENST00000485780 YBX3P16989 372 aaKnown RBP eCLIP12.01□□□□□ -0.49
SHROOM3-207ENST00000485780 EIF2S2P20042 333 aaKnown RBP12.01□□□□□ -0.49
SHROOM3-207ENST00000485780 CANXP27824 592 aaKnown RBP12.01□□□□□ -0.49
SHROOM3-207ENST00000485780 CCDC30Q5VVM6 783 aa12.01□□□□□ -0.49
SHROOM3-207ENST00000485780 CHPF2Q9P2E5 772 aa12.01□□□□□ -0.49
SHROOM3-207ENST00000485780 DBF4Q9UBU7 674 aaPredicted RBP12.01□□□□□ -0.49
SHROOM3-207ENST00000485780 A0A087WZG4 1122 aa12□□□□□ -0.49
SHROOM3-207ENST00000485780 PIP4K2AP48426 406 aaPredicted RBP12□□□□□ -0.49
SHROOM3-207ENST00000485780 NPM2Q86SE8 214 aaKnown RBP12□□□□□ -0.49
SHROOM3-207ENST00000485780 NARFQ9UHQ1 456 aa12□□□□□ -0.49
SHROOM3-207ENST00000485780 WWC3Q9ULE0 1092 aa12□□□□□ -0.49
SHROOM3-207ENST00000485780 CAMTA2O94983 1202 aa11.99□□□□□ -0.49
SHROOM3-207ENST00000485780 FKBP8Q14318 412 aa11.99□□□□□ -0.49
SHROOM3-207ENST00000485780 HYPKQ9NX55 129 aa11.99□□□□□ -0.49
SHROOM3-207ENST00000485780 AFDNP55196 1824 aaKnown RBP11.98□□□□□ -0.49
SHROOM3-207ENST00000485780 KIF13BQ9NQT8 1826 aa11.98□□□□□ -0.49
SHROOM3-207ENST00000485780 C10orf71Q711Q0 1435 aa11.98□□□□□ -0.49
SHROOM3-207ENST00000485780 ATP10DQ9P241 1426 aa11.98□□□□□ -0.49
SHROOM3-207ENST00000485780 BRPF1P55201 1214 aaPredicted RBP11.98□□□□□ -0.49
SHROOM3-207ENST00000485780 TGFB2P61812 414 aa11.98□□□□□ -0.49
SHROOM3-207ENST00000485780 USPL1Q5W0Q7 1092 aa11.98□□□□□ -0.49
SHROOM3-207ENST00000485780 ZNF784Q8NCA9 323 aaPredicted RBP11.98□□□□□ -0.49
SHROOM3-207ENST00000485780 NECTIN2Q92692 538 aa11.98□□□□□ -0.49
SHROOM3-207ENST00000485780 BCL2L12Q9HB09 334 aa11.98□□□□□ -0.49
SHROOM3-207ENST00000485780 ZNF330Q9Y3S2 320 aaPredicted RBP11.98□□□□□ -0.49
SHROOM3-207ENST00000485780 MAP3K15Q6ZN16 1313 aa11.97□□□□□ -0.49
SHROOM3-207ENST00000485780 ERVV-1B6SEH8 477 aa11.97□□□□□ -0.49
SHROOM3-207ENST00000485780 ANXA1P04083 346 aa11.97□□□□□ -0.49
SHROOM3-207ENST00000485780 MYL6BP14649 208 aa11.97□□□□□ -0.49
SHROOM3-207ENST00000485780 ALDH1L2Q3SY69 923 aa11.97□□□□□ -0.49
SHROOM3-207ENST00000485780 DZIP3Q86Y13 1208 aaKnown RBP11.97□□□□□ -0.49
SHROOM3-207ENST00000485780 CHD4Q14839 1912 aa11.97□□□□□ -0.49
SHROOM3-207ENST00000485780 PXDNLA1KZ92 1463 aa11.96□□□□□ -0.49
SHROOM3-207ENST00000485780 DDR1Q08345 913 aa11.96□□□□□ -0.49
SHROOM3-207ENST00000485780 CLEC4GQ6UXB4 293 aa11.96□□□□□ -0.49
SHROOM3-207ENST00000485780 TTLL7Q6ZT98 887 aa11.96□□□□□ -0.49
SHROOM3-207ENST00000485780 XAGE3Q8WTP9 111 aa11.96□□□□□ -0.49
SHROOM3-207ENST00000485780 STK31Q9BXU1 1019 aa11.96□□□□□ -0.49
SHROOM3-207ENST00000485780 A0A0G2JLW4 131 aa11.95□□□□□ -0.5
SHROOM3-207ENST00000485780 COPS6Q7L5N1 327 aa11.95□□□□□ -0.5
SHROOM3-207ENST00000485780 SSH1Q8WYL5 1049 aa11.95□□□□□ -0.5
SHROOM3-207ENST00000485780 PHAXQ9H814 394 aaKnown RBP11.95□□□□□ -0.5
SHROOM3-207ENST00000485780 TBC1D2BQ9UPU7 963 aa11.95□□□□□ -0.5
SHROOM3-207ENST00000485780 BCS1LQ9Y276 419 aa11.95□□□□□ -0.5
SHROOM3-207ENST00000485780 ADCY9O60503 1353 aa11.94□□□□□ -0.5
SHROOM3-207ENST00000485780 POLRMTO00411 1230 aaKnown RBP11.94□□□□□ -0.5
SHROOM3-207ENST00000485780 SLC4A2P04920 1241 aa11.94□□□□□ -0.5
SHROOM3-207ENST00000485780 DPEP1P16444 411 aa11.94□□□□□ -0.5
SHROOM3-207ENST00000485780 TM4SF1P30408 202 aa11.94□□□□□ -0.5
SHROOM3-207ENST00000485780 RARSP54136 660 aaKnown RBP11.94□□□□□ -0.5
SHROOM3-207ENST00000485780 FLIIQ13045 1269 aa11.94□□□□□ -0.5
SHROOM3-207ENST00000485780 GIGYF2Q6Y7W6 1299 aaKnown RBP11.94□□□□□ -0.5
SHROOM3-207ENST00000485780 KIF6Q6ZMV9 814 aa11.94□□□□□ -0.5
SHROOM3-207ENST00000485780 MRPL50Q8N5N7 158 aaKnown RBP11.94□□□□□ -0.5
SHROOM3-207ENST00000485780 PLBD2Q8NHP8 589 aa11.94□□□□□ -0.5
SHROOM3-207ENST00000485780 KIAA1551Q9HCM1 1747 aa11.94□□□□□ -0.5
SHROOM3-207ENST00000485780 IBTKQ9P2D0 1353 aaPredicted RBP11.93□□□□□ -0.5
SHROOM3-207ENST00000485780 LAMB2P55268 1798 aa11.93□□□□□ -0.5
SHROOM3-207ENST00000485780 NFIXQ14938 502 aa11.93□□□□□ -0.5
SHROOM3-207ENST00000485780 BICDL1Q6ZP65 573 aa11.93□□□□□ -0.5
SHROOM3-207ENST00000485780 G2E3Q7L622 706 aa11.93□□□□□ -0.5
SHROOM3-207ENST00000485780 YTHDC1Q96MU7 727 aaKnown RBP11.93□□□□□ -0.5
SHROOM3-207ENST00000485780 ZNF652Q9Y2D9 606 aa11.93□□□□□ -0.5
SHROOM3-207ENST00000485780 ANKRD31Q8N7Z5 1873 aa11.93□□□□□ -0.5
SHROOM3-207ENST00000485780 TCERG1O14776 1098 aaKnown RBP11.92□□□□□ -0.5
SHROOM3-207ENST00000485780 SERPINB2P05120 415 aa11.92□□□□□ -0.5
SHROOM3-207ENST00000485780 HLFQ16534 295 aa11.92□□□□□ -0.5
SHROOM3-207ENST00000485780 ANKRD13DQ6ZTN6 518 aa11.92□□□□□ -0.5
SHROOM3-207ENST00000485780 PIM2Q9P1W9 311 aa11.92□□□□□ -0.5
SHROOM3-207ENST00000485780 CARMIL3Q8ND23 1372 aa11.92□□□□□ -0.5
SHROOM3-207ENST00000485780 PTPRCP08575 1304 aa11.91□□□□□ -0.5
SHROOM3-207ENST00000485780 NPHP1O15259 732 aa11.91□□□□□ -0.5
SHROOM3-207ENST00000485780 AIMP1Q12904 312 aaKnown RBP11.91□□□□□ -0.5
SHROOM3-207ENST00000485780 DALRD3Q5D0E6 543 aaKnown RBP11.91□□□□□ -0.5
SHROOM3-207ENST00000485780 TBC1D9BQ66K14 1250 aa11.91□□□□□ -0.5
SHROOM3-207ENST00000485780 KSR2Q6VAB6 950 aa11.91□□□□□ -0.5
SHROOM3-207ENST00000485780 ARHGAP27Q6ZUM4 889 aa11.91□□□□□ -0.5
SHROOM3-207ENST00000485780 ZNF34Q8IZ26 560 aa11.91□□□□□ -0.5
SHROOM3-207ENST00000485780 ZBTB3Q9H5J0 574 aa11.91□□□□□ -0.5
SHROOM3-207ENST00000485780 SMC4Q9NTJ3 1288 aa11.91□□□□□ -0.5
SHROOM3-207ENST00000485780 DLEC1Q9Y238 1755 aa11.91□□□□□ -0.5
SHROOM3-207ENST00000485780 KIF16BQ96L93 1317 aa11.9□□□□□ -0.5
SHROOM3-207ENST00000485780 DDX58O95786 925 aaKnown RBP11.9□□□□□ -0.5
SHROOM3-207ENST00000485780 CHRNA5P30532 468 aa11.9□□□□□ -0.5
SHROOM3-207ENST00000485780 BRCA1P38398 1863 aaKnown RBP11.9□□□□□ -0.5
SHROOM3-207ENST00000485780 TRIM28Q13263 835 aaKnown RBP11.9□□□□□ -0.5
SHROOM3-207ENST00000485780 RIC1Q4ADV7 1423 aa11.9□□□□□ -0.5
SHROOM3-207ENST00000485780 HSP90AB3PQ58FF7 597 aa11.9□□□□□ -0.5
SHROOM3-207ENST00000485780 DDX60Q8IY21 1712 aaKnown RBP11.9□□□□□ -0.5
SHROOM3-207ENST00000485780 ISCA1Q9BUE6 129 aa11.9□□□□□ -0.5
SHROOM3-207ENST00000485780 UBN2Q6ZU65 1347 aa11.89□□□□□ -0.51
SHROOM3-207ENST00000485780 PI4KAP2A4QPH2 592 aa11.89□□□□□ -0.51
SHROOM3-207ENST00000485780 TCIRG1Q13488 830 aa11.89□□□□□ -0.51
SHROOM3-207ENST00000485780 PI4KAP1Q8N8J0 262 aa11.89□□□□□ -0.51
SHROOM3-207ENST00000485780 ARHGAP45Q92619 1136 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms