RNA–Protein interactions for RNA: ENST00000484581.6

VPS13A-211, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2 BASIC

Gene VPS13A, Length 1,155 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-211ENST00000484581 FAM182BQ5T319 152 aa7.74□□□□□ -1.17
VPS13A-211ENST00000484581 ZIC5Q96T25 663 aa7.74□□□□□ -1.17
VPS13A-211ENST00000484581 PPP1R12CQ9BZL4 782 aa7.74□□□□□ -1.17
VPS13A-211ENST00000484581 GZF1Q9H116 711 aaPredicted RBP7.74□□□□□ -1.17
VPS13A-211ENST00000484581 IQSEC3Q9UPP2 1182 aaPredicted RBP7.74□□□□□ -1.17
VPS13A-211ENST00000484581 PARP3Q9Y6F1 533 aa7.74□□□□□ -1.17
VPS13A-211ENST00000484581 BRD1O95696 1058 aa7.73□□□□□ -1.17
VPS13A-211ENST00000484581 MFAP1P55081 439 aaKnown RBP7.73□□□□□ -1.17
VPS13A-211ENST00000484581 SRPK2P78362 688 aaKnown RBP7.73□□□□□ -1.17
VPS13A-211ENST00000484581 NFATC2IPQ8NCF5 419 aa7.73□□□□□ -1.17
VPS13A-211ENST00000484581 RGS22Q8NE09 1264 aa7.73□□□□□ -1.17
VPS13A-211ENST00000484581 ALG2Q9H553 416 aa7.73□□□□□ -1.17
VPS13A-211ENST00000484581 SUV39H2Q9H5I1 410 aa7.73□□□□□ -1.17
VPS13A-211ENST00000484581 NEUROD4Q9HD90 331 aa7.73□□□□□ -1.17
VPS13A-211ENST00000484581 NOP53Q9NZM5 478 aaKnown RBP7.73□□□□□ -1.17
VPS13A-211ENST00000484581 RFX1P22670 979 aa7.72□□□□□ -1.17
VPS13A-211ENST00000484581 ZNF295-AS1Q8N0V1 137 aa7.72□□□□□ -1.17
VPS13A-211ENST00000484581 AVENQ9NQS1 362 aaPredicted RBP7.72□□□□□ -1.17
VPS13A-211ENST00000484581 USP3Q9Y6I4 520 aa7.72□□□□□ -1.17
VPS13A-211ENST00000484581 FAM157BP0CG42 384 aa7.71□□□□□ -1.18
VPS13A-211ENST00000484581 HOXB4P17483 251 aaPredicted RBP7.71□□□□□ -1.18
VPS13A-211ENST00000484581 NCOA4Q13772 614 aa7.71□□□□□ -1.18
VPS13A-211ENST00000484581 CHSY3Q70JA7 882 aa7.71□□□□□ -1.18
VPS13A-211ENST00000484581 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.71□□□□□ -1.18
VPS13A-211ENST00000484581 MARK1Q9P0L2 795 aa7.71□□□□□ -1.18
VPS13A-211ENST00000484581 SCHIP1Q9P0W5 487 aaPredicted RBP7.71□□□□□ -1.18
VPS13A-211ENST00000484581 ZNF232Q9UNY5 417 aa7.71□□□□□ -1.18
VPS13A-211ENST00000484581 PALM3A6NDB9 673 aaPredicted RBP7.7□□□□□ -1.18
VPS13A-211ENST00000484581 PCBP4P57723 403 aaKnown RBP7.7□□□□□ -1.18
VPS13A-211ENST00000484581 LAMC2Q13753 1193 aa7.7□□□□□ -1.18
VPS13A-211ENST00000484581 SAMD5Q5TGI4 173 aa7.7□□□□□ -1.18
VPS13A-211ENST00000484581 TRIM50Q86XT4 487 aa7.7□□□□□ -1.18
VPS13A-211ENST00000484581 L3MBTL2Q969R5 705 aa7.7□□□□□ -1.18
VPS13A-211ENST00000484581 ZNF358Q9NW07 568 aa7.7□□□□□ -1.18
VPS13A-211ENST00000484581 ALAS2P22557 587 aa7.69□□□□□ -1.18
VPS13A-211ENST00000484581 NOS2P35228 1153 aa7.69□□□□□ -1.18
VPS13A-211ENST00000484581 TXLNAP40222 546 aa7.69□□□□□ -1.18
VPS13A-211ENST00000484581 DGKGP49619 791 aa7.69□□□□□ -1.18
VPS13A-211ENST00000484581 TEAD4Q15561 434 aa7.69□□□□□ -1.18
VPS13A-211ENST00000484581 KRTAP1-3Q8IUG1 177 aa7.69□□□□□ -1.18
VPS13A-211ENST00000484581 DEPDC4Q8N2C3 294 aa7.69□□□□□ -1.18
VPS13A-211ENST00000484581 UCN2Q96RP3 112 aa7.69□□□□□ -1.18
VPS13A-211ENST00000484581 KLF15Q9UIH9 416 aa7.69□□□□□ -1.18
VPS13A-211ENST00000484581 USP17L5A8MUK1 530 aa7.68□□□□□ -1.18
VPS13A-211ENST00000484581 ZNF468Q5VIY5 522 aaPredicted RBP7.68□□□□□ -1.18
VPS13A-211ENST00000484581 LRRC69Q6ZNQ3 347 aa7.68□□□□□ -1.18
VPS13A-211ENST00000484581 FCHSD1Q86WN1 690 aa7.68□□□□□ -1.18
VPS13A-211ENST00000484581 MTMR7Q9Y216 660 aa7.68□□□□□ -1.18
VPS13A-211ENST00000484581 C1QTNF9BB2RNN3 333 aa7.67□□□□□ -1.18
VPS13A-211ENST00000484581 ATG7O95352 703 aa7.67□□□□□ -1.18
VPS13A-211ENST00000484581 ITGB7P26010 798 aa7.67□□□□□ -1.18
VPS13A-211ENST00000484581 LMOD1P29536 600 aaPredicted RBP7.67□□□□□ -1.18
VPS13A-211ENST00000484581 SLC9A9Q8IVB4 645 aa7.67□□□□□ -1.18
VPS13A-211ENST00000484581 TNS4Q8IZW8 715 aa7.67□□□□□ -1.18
VPS13A-211ENST00000484581 ZDHHC1Q8WTX9 485 aa7.67□□□□□ -1.18
VPS13A-211ENST00000484581 STRN4Q9NRL3 753 aa7.67□□□□□ -1.18
VPS13A-211ENST00000484581 HCN2Q9UL51 889 aa7.67□□□□□ -1.18
VPS13A-211ENST00000484581 SERTM1A2A2V5 107 aa7.66□□□□□ -1.18
VPS13A-211ENST00000484581 ATP1A2P50993 1020 aa7.66□□□□□ -1.18
VPS13A-211ENST00000484581 TBCELQ5QJ74 424 aa7.66□□□□□ -1.18
VPS13A-211ENST00000484581 CHMP3Q9Y3E7 222 aa7.66□□□□□ -1.18
VPS13A-211ENST00000484581 EFSO43281 561 aa7.65□□□□□ -1.18
VPS13A-211ENST00000484581 SYT9Q86SS6 491 aa7.65□□□□□ -1.18
VPS13A-211ENST00000484581 CD163Q86VB7 1156 aa7.65□□□□□ -1.18
VPS13A-211ENST00000484581 TPCN2Q8NHX9 752 aa7.65□□□□□ -1.18
VPS13A-211ENST00000484581 PLVAPQ9BX97 442 aa7.65□□□□□ -1.18
VPS13A-211ENST00000484581 TFIP11Q9UBB9 837 aaKnown RBP7.65□□□□□ -1.18
VPS13A-211ENST00000484581 MAFBQ9Y5Q3 323 aaPredicted RBP7.65□□□□□ -1.18
VPS13A-211ENST00000484581 GPC6Q9Y625 555 aaPredicted RBP7.65□□□□□ -1.18
VPS13A-211ENST00000484581 ELOA3CA0A087WX78 387 aaPredicted RBP7.64□□□□□ -1.19
VPS13A-211ENST00000484581 ELOA3DA6NLF2 546 aaPredicted RBP7.64□□□□□ -1.19
VPS13A-211ENST00000484581 EML1O00423 815 aa7.64□□□□□ -1.19
VPS13A-211ENST00000484581 ELOA3BQ3SY89 546 aa7.64□□□□□ -1.19
VPS13A-211ENST00000484581 CCDC102BQ68D86 513 aa7.64□□□□□ -1.19
VPS13A-211ENST00000484581 ELOA3Q8NG57 546 aa7.64□□□□□ -1.19
VPS13A-211ENST00000484581 RBM19Q9Y4C8 960 aaKnown RBP7.64□□□□□ -1.19
VPS13A-211ENST00000484581 TMEM88BA6NKF7 163 aa7.63□□□□□ -1.19
VPS13A-211ENST00000484581 SPDYE3A6NKU9 549 aa7.63□□□□□ -1.19
VPS13A-211ENST00000484581 EPHA4P54764 986 aa7.63□□□□□ -1.19
VPS13A-211ENST00000484581 NEUROD1Q13562 356 aa7.63□□□□□ -1.19
VPS13A-211ENST00000484581 RHPN1Q8TCX5 695 aa7.63□□□□□ -1.19
VPS13A-211ENST00000484581 ZBTB7BO15156 539 aaPredicted RBP7.62□□□□□ -1.19
VPS13A-211ENST00000484581 ATP9BO43861 1147 aa7.62□□□□□ -1.19
VPS13A-211ENST00000484581 SIN3BO75182 1162 aa7.62□□□□□ -1.19
VPS13A-211ENST00000484581 PLEKHM2Q8IWE5 1019 aa7.62□□□□□ -1.19
VPS13A-211ENST00000484581 VRTNQ9H8Y1 702 aa7.62□□□□□ -1.19
VPS13A-211ENST00000484581 ANKIB1Q9P2G1 1089 aa7.62□□□□□ -1.19
VPS13A-211ENST00000484581 HCN4Q9Y3Q4 1203 aa7.62□□□□□ -1.19
VPS13A-211ENST00000484581 IVNS1ABPQ9Y6Y0 642 aa7.62□□□□□ -1.19
VPS13A-211ENST00000484581 USP17L3A6NCW0 530 aa7.61□□□□□ -1.19
VPS13A-211ENST00000484581 USP17L4A6NCW7 530 aa7.61□□□□□ -1.19
VPS13A-211ENST00000484581 CHRNA4P43681 627 aa7.61□□□□□ -1.19
VPS13A-211ENST00000484581 PSMA6P60900 246 aaKnown RBP7.61□□□□□ -1.19
VPS13A-211ENST00000484581 SFSWAPQ12872 951 aaKnown RBP7.61□□□□□ -1.19
VPS13A-211ENST00000484581 C1orf53Q5VUE5 145 aa7.61□□□□□ -1.19
VPS13A-211ENST00000484581 USP17L2Q6R6M4 530 aa7.61□□□□□ -1.19
VPS13A-211ENST00000484581 USP17L1Q7RTZ2 530 aa7.61□□□□□ -1.19
VPS13A-211ENST00000484581 TRIM11Q96F44 468 aa7.61□□□□□ -1.19
VPS13A-211ENST00000484581 CEP63Q96MT8 703 aa7.61□□□□□ -1.19
VPS13A-211ENST00000484581 CARNS1A5YM72 827 aa7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms