RNA–Protein interactions for RNA: ENST00000483876.1

COL17A1-206, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 622 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-206ENST00000483876 NBPF4Q96M43 638 aa6.91□□□□□ -1.3
COL17A1-206ENST00000483876 KIF16BQ96L93 1317 aa6.91□□□□□ -1.3
COL17A1-206ENST00000483876 NCAPD2Q15021 1401 aa6.91□□□□□ -1.3
COL17A1-206ENST00000483876 ADAMTS7Q9UKP4 1686 aa6.9□□□□□ -1.3
COL17A1-206ENST00000483876 CANXP27824 592 aaKnown RBP6.9□□□□□ -1.3
COL17A1-206ENST00000483876 PLEKHO1Q53GL0 409 aaPredicted RBP6.9□□□□□ -1.3
COL17A1-206ENST00000483876 ATF7IPQ6VMQ6 1270 aa6.9□□□□□ -1.3
COL17A1-206ENST00000483876 CENPQQ7L2Z9 268 aaPredicted RBP6.9□□□□□ -1.3
COL17A1-206ENST00000483876 LDHDQ86WU2 507 aa6.9□□□□□ -1.3
COL17A1-206ENST00000483876 DZIP1LQ8IYY4 767 aaKnown RBP6.9□□□□□ -1.3
COL17A1-206ENST00000483876 SMC4Q9NTJ3 1288 aa6.9□□□□□ -1.3
COL17A1-206ENST00000483876 CCDC87Q9NVE4 849 aa6.9□□□□□ -1.3
COL17A1-206ENST00000483876 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.9□□□□□ -1.3
COL17A1-206ENST00000483876 KDM6AO15550 1401 aaPredicted RBP6.9□□□□□ -1.31
COL17A1-206ENST00000483876 CUL9Q8IWT3 2517 aa6.9□□□□□ -1.31
COL17A1-206ENST00000483876 LY75O60449 1722 aa6.9□□□□□ -1.31
COL17A1-206ENST00000483876 TCERG1O14776 1098 aaKnown RBP6.89□□□□□ -1.31
COL17A1-206ENST00000483876 MVPQ14764 893 aaKnown RBP6.89□□□□□ -1.31
COL17A1-206ENST00000483876 TAF7Q15545 349 aaPredicted RBP6.89□□□□□ -1.31
COL17A1-206ENST00000483876 TWISTNBQ3B726 338 aaPredicted RBP6.89□□□□□ -1.31
COL17A1-206ENST00000483876 CYP4F22Q6NT55 531 aa6.89□□□□□ -1.31
COL17A1-206ENST00000483876 MRPL50Q8N5N7 158 aaKnown RBP6.89□□□□□ -1.31
COL17A1-206ENST00000483876 FRAT1Q92837 279 aaPredicted RBP6.89□□□□□ -1.31
COL17A1-206ENST00000483876 CLUAP1Q96AJ1 413 aa6.89□□□□□ -1.31
COL17A1-206ENST00000483876 THUMPD2Q9BTF0 503 aaKnown RBP6.89□□□□□ -1.31
COL17A1-206ENST00000483876 TSHZ2Q9NRE2 1034 aa6.89□□□□□ -1.31
COL17A1-206ENST00000483876 NOB1Q9ULX3 412 aaKnown RBP6.89□□□□□ -1.31
COL17A1-206ENST00000483876 DDX19BQ9UMR2 479 aa6.89□□□□□ -1.31
COL17A1-206ENST00000483876 LAS1LQ9Y4W2 734 aaKnown RBP6.89□□□□□ -1.31
COL17A1-206ENST00000483876 LTBP1Q14766 1721 aa6.89□□□□□ -1.31
COL17A1-206ENST00000483876 CEMIPQ8WUJ3 1361 aa6.88□□□□□ -1.31
COL17A1-206ENST00000483876 TRIM27P14373 513 aa6.88□□□□□ -1.31
COL17A1-206ENST00000483876 SSFA2P28290 1259 aa6.88□□□□□ -1.31
COL17A1-206ENST00000483876 MAP2K2P36507 400 aa6.88□□□□□ -1.31
COL17A1-206ENST00000483876 DCTN1Q14203 1278 aa6.88□□□□□ -1.31
COL17A1-206ENST00000483876 AKAP4Q5JQC9 854 aa6.88□□□□□ -1.31
COL17A1-206ENST00000483876 MCM10Q7L590 875 aa6.88□□□□□ -1.31
COL17A1-206ENST00000483876 C8orf58Q8NAV2 365 aa6.88□□□□□ -1.31
COL17A1-206ENST00000483876 IL17REQ8NFR9 667 aa6.88□□□□□ -1.31
COL17A1-206ENST00000483876 PANK1Q8TE04 598 aa6.88□□□□□ -1.31
COL17A1-206ENST00000483876 ANKRD24Q8TF21 1146 aa6.88□□□□□ -1.31
COL17A1-206ENST00000483876 LTV1Q96GA3 475 aaPredicted RBP6.88□□□□□ -1.31
COL17A1-206ENST00000483876 API5Q9BZZ5 524 aaKnown RBP6.88□□□□□ -1.31
COL17A1-206ENST00000483876 COG6Q9Y2V7 657 aa6.88□□□□□ -1.31
COL17A1-206ENST00000483876 DLG5Q8TDM6 1919 aa6.88□□□□□ -1.31
COL17A1-206ENST00000483876 THSD7BQ9C0I4 1608 aa6.87□□□□□ -1.31
COL17A1-206ENST00000483876 MEGF6O75095 1541 aa6.87□□□□□ -1.31
COL17A1-206ENST00000483876 AOC2O75106 756 aa6.87□□□□□ -1.31
COL17A1-206ENST00000483876 HOXB7P09629 217 aa6.87□□□□□ -1.31
COL17A1-206ENST00000483876 FTSJ3Q8IY81 847 aaKnown RBP6.87□□□□□ -1.31
COL17A1-206ENST00000483876 TSPYL6Q8N831 410 aa6.87□□□□□ -1.31
COL17A1-206ENST00000483876 RWDD1Q9H446 243 aaPredicted RBP6.87□□□□□ -1.31
COL17A1-206ENST00000483876 NLRP2Q9NX02 1062 aa6.87□□□□□ -1.31
COL17A1-206ENST00000483876 COLQQ9Y215 455 aaPredicted RBP6.87□□□□□ -1.31
COL17A1-206ENST00000483876 KIF13BQ9NQT8 1826 aa6.87□□□□□ -1.31
COL17A1-206ENST00000483876 ARFGEF1Q9Y6D6 1849 aa6.87□□□□□ -1.31
COL17A1-206ENST00000483876 LTN1O94822 1766 aa6.87□□□□□ -1.31
COL17A1-206ENST00000483876 PTPRCP08575 1304 aa6.86□□□□□ -1.31
COL17A1-206ENST00000483876 IQCA1LA6NCM1 817 aa6.86□□□□□ -1.31
COL17A1-206ENST00000483876 RLBP1P12271 317 aa6.86□□□□□ -1.31
COL17A1-206ENST00000483876 PPP4R3CPQ6ZMV5 832 aa6.86□□□□□ -1.31
COL17A1-206ENST00000483876 BCL2L13Q9BXK5 485 aa6.86□□□□□ -1.31
COL17A1-206ENST00000483876 ZBTB40Q9NUA8 1239 aa6.86□□□□□ -1.31
COL17A1-206ENST00000483876 TSPYL4Q9UJ04 414 aa6.86□□□□□ -1.31
COL17A1-206ENST00000483876 CLEC11AQ9Y240 323 aa6.86□□□□□ -1.31
COL17A1-206ENST00000483876 PARP3Q9Y6F1 533 aa6.86□□□□□ -1.31
COL17A1-206ENST00000483876 C5P01031 1676 aa6.86□□□□□ -1.31
COL17A1-206ENST00000483876 A0A0C4DFX4 3053 aa6.86□□□□□ -1.31
COL17A1-206ENST00000483876 ZBTB7BO15156 539 aaPredicted RBP6.85□□□□□ -1.31
COL17A1-206ENST00000483876 DDNO94850 711 aaPredicted RBP6.85□□□□□ -1.31
COL17A1-206ENST00000483876 HDAC1Q13547 482 aaPredicted RBP6.85□□□□□ -1.31
COL17A1-206ENST00000483876 EAPPQ56P03 285 aaPredicted RBP6.85□□□□□ -1.31
COL17A1-206ENST00000483876 C1orf141Q5JVX7 400 aa6.85□□□□□ -1.31
COL17A1-206ENST00000483876 INTS3Q68E01 1043 aaKnown RBP6.85□□□□□ -1.31
COL17A1-206ENST00000483876 CNTROBQ8N137 903 aa6.85□□□□□ -1.31
COL17A1-206ENST00000483876 NLGN1Q8N2Q7 840 aa6.85□□□□□ -1.31
COL17A1-206ENST00000483876 COL25A1Q9BXS0 654 aaPredicted RBP6.85□□□□□ -1.31
COL17A1-206ENST00000483876 SPG7Q9UQ90 795 aa6.85□□□□□ -1.31
COL17A1-206ENST00000483876 ABCC4O15439 1325 aa6.84□□□□□ -1.31
COL17A1-206ENST00000483876 SBF1O95248 1867 aa6.84□□□□□ -1.31
COL17A1-206ENST00000483876 ELL2O00472 640 aaPredicted RBP6.84□□□□□ -1.31
COL17A1-206ENST00000483876 IGHDP01880 384 aa6.84□□□□□ -1.31
COL17A1-206ENST00000483876 HSP90AB1P08238 724 aaKnown RBP6.84□□□□□ -1.31
COL17A1-206ENST00000483876 TATP17735 454 aaPredicted RBP6.84□□□□□ -1.31
COL17A1-206ENST00000483876 CHRNA5P30532 468 aa6.84□□□□□ -1.31
COL17A1-206ENST00000483876 CCDC30Q5VVM6 783 aa6.84□□□□□ -1.31
COL17A1-206ENST00000483876 ZNF530Q6P9A1 599 aaPredicted RBP6.84□□□□□ -1.31
COL17A1-206ENST00000483876 USHBP1Q8N6Y0 703 aa6.84□□□□□ -1.31
COL17A1-206ENST00000483876 RAPGEF4Q8WZA2 1011 aa6.84□□□□□ -1.31
COL17A1-206ENST00000483876 TAF1DQ9H5J8 278 aaPredicted RBP6.84□□□□□ -1.31
COL17A1-206ENST00000483876 HPS5Q9UPZ3 1129 aa6.84□□□□□ -1.31
COL17A1-206ENST00000483876 RBM19Q9Y4C8 960 aaKnown RBP6.84□□□□□ -1.31
COL17A1-206ENST00000483876 PCDHB15Q9Y5E8 787 aa6.84□□□□□ -1.31
COL17A1-206ENST00000483876 CASP8AP2Q9UKL3 1982 aa6.84□□□□□ -1.32
COL17A1-206ENST00000483876 BRCA1P38398 1863 aaKnown RBP6.83□□□□□ -1.32
COL17A1-206ENST00000483876 PALLDQ8WX93 1383 aa6.83□□□□□ -1.32
COL17A1-206ENST00000483876 RNMTO43148 476 aaKnown RBP6.83□□□□□ -1.32
COL17A1-206ENST00000483876 SLC4A2P04920 1241 aa6.83□□□□□ -1.32
COL17A1-206ENST00000483876 EIF4A1P60842 406 aaKnown RBP6.83□□□□□ -1.32
COL17A1-206ENST00000483876 TEFQ10587 303 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms