RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 PLIN1O60240 522 aa15.58■□□□□ 0.08
SDC1-206ENST00000482879 RFC4P35249 363 aa15.58■□□□□ 0.08
SDC1-206ENST00000482879 KSR2Q6VAB6 950 aa15.58■□□□□ 0.08
SDC1-206ENST00000482879 RIC3Q7Z5B4 369 aa15.58■□□□□ 0.08
SDC1-206ENST00000482879 PI4KAP1Q8N8J0 262 aa15.58■□□□□ 0.08
SDC1-206ENST00000482879 FLAD1Q8NFF5 587 aa15.58■□□□□ 0.08
SDC1-206ENST00000482879 PLBD2Q8NHP8 589 aa15.58■□□□□ 0.08
SDC1-206ENST00000482879 API5Q9BZZ5 524 aaKnown RBP15.58■□□□□ 0.08
SDC1-206ENST00000482879 ZBTB3Q9H5J0 574 aa15.58■□□□□ 0.08
SDC1-206ENST00000482879 NUP98P52948 1817 aa15.58■□□□□ 0.08
SDC1-206ENST00000482879 C4AP0C0L4 1744 aa15.57■□□□□ 0.08
SDC1-206ENST00000482879 MSH5O43196 834 aa15.57■□□□□ 0.08
SDC1-206ENST00000482879 ZPR1O75312 459 aa15.57■□□□□ 0.08
SDC1-206ENST00000482879 ATF7IPQ6VMQ6 1270 aa15.57■□□□□ 0.08
SDC1-206ENST00000482879 COL23A1Q86Y22 540 aaPredicted RBP15.57■□□□□ 0.08
SDC1-206ENST00000482879 MAP3K15Q6ZN16 1313 aa15.57■□□□□ 0.08
SDC1-206ENST00000482879 QSER1Q2KHR3 1735 aa15.57■□□□□ 0.08
SDC1-206ENST00000482879 ERVV-1B6SEH8 477 aa15.56■□□□□ 0.08
SDC1-206ENST00000482879 F6X3S4 739 aa15.56■□□□□ 0.08
SDC1-206ENST00000482879 CAMTA2O94983 1202 aa15.56■□□□□ 0.08
SDC1-206ENST00000482879 RRP1P56182 461 aaKnown RBP15.56■□□□□ 0.08
SDC1-206ENST00000482879 SRP68Q9UHB9 627 aaKnown RBP15.56■□□□□ 0.08
SDC1-206ENST00000482879 NARFQ9UHQ1 456 aa15.56■□□□□ 0.08
SDC1-206ENST00000482879 MAP3K2Q9Y2U5 619 aa15.56■□□□□ 0.08
SDC1-206ENST00000482879 PNPLA7Q6ZV29 1317 aa15.56■□□□□ 0.08
SDC1-206ENST00000482879 ARFGEF2Q9Y6D5 1785 aa15.56■□□□□ 0.08
SDC1-206ENST00000482879 ADCY9O60503 1353 aa15.55■□□□□ 0.08
SDC1-206ENST00000482879 TRIM27P14373 513 aa15.55■□□□□ 0.08
SDC1-206ENST00000482879 HLFQ16534 295 aa15.55■□□□□ 0.08
SDC1-206ENST00000482879 USPL1Q5W0Q7 1092 aa15.55■□□□□ 0.08
SDC1-206ENST00000482879 DNAAF4Q8WXU2 420 aa15.55■□□□□ 0.08
SDC1-206ENST00000482879 CLUAP1Q96AJ1 413 aa15.55■□□□□ 0.08
SDC1-206ENST00000482879 TNNQ9UQP3 1299 aa15.55■□□□□ 0.08
SDC1-206ENST00000482879 BCORQ6W2J9 1755 aa15.54■□□□□ 0.08
SDC1-206ENST00000482879 SOCS7O14512 581 aa15.54■□□□□ 0.08
SDC1-206ENST00000482879 SLC4A10Q6U841 1118 aa15.54■□□□□ 0.08
SDC1-206ENST00000482879 GIGYF2Q6Y7W6 1299 aaKnown RBP15.54■□□□□ 0.08
SDC1-206ENST00000482879 METTL22Q9BUU2 404 aaPredicted RBP15.54■□□□□ 0.08
SDC1-206ENST00000482879 RNF123Q5XPI4 1314 aa15.53■□□□□ 0.08
SDC1-206ENST00000482879 USP42Q9H9J4 1324 aaKnown RBP15.53■□□□□ 0.08
SDC1-206ENST00000482879 MS4A1P11836 297 aa15.53■□□□□ 0.08
SDC1-206ENST00000482879 FTSJ3Q8IY81 847 aaKnown RBP15.53■□□□□ 0.08
SDC1-206ENST00000482879 DZIP1LQ8IYY4 767 aaKnown RBP15.53■□□□□ 0.08
SDC1-206ENST00000482879 ZNF652Q9Y2D9 606 aa15.53■□□□□ 0.08
SDC1-206ENST00000482879 SCN7AQ01118 1682 aa15.52■□□□□ 0.08
SDC1-206ENST00000482879 NEXNQ0ZGT2 675 aa15.52■□□□□ 0.08
SDC1-206ENST00000482879 TCIRG1Q13488 830 aa15.52■□□□□ 0.08
SDC1-206ENST00000482879 R3HDM1Q15032 1099 aaKnown RBP15.52■□□□□ 0.08
SDC1-206ENST00000482879 HSP90AB3PQ58FF7 597 aa15.52■□□□□ 0.08
SDC1-206ENST00000482879 CLEC4GQ6UXB4 293 aa15.52■□□□□ 0.08
SDC1-206ENST00000482879 MYD88Q99836 296 aa15.52■□□□□ 0.08
SDC1-206ENST00000482879 BCL2L12Q9HB09 334 aa15.52■□□□□ 0.08
SDC1-206ENST00000482879 AFDNP55196 1824 aaKnown RBP15.52■□□□□ 0.07
SDC1-206ENST00000482879 ANKRD36CQ5JPF3 1778 aa15.52■□□□□ 0.07
SDC1-206ENST00000482879 ABCC4O15439 1325 aa15.51■□□□□ 0.07
SDC1-206ENST00000482879 RGL2O15211 777 aa15.51■□□□□ 0.07
SDC1-206ENST00000482879 GYS1P13807 737 aa15.51■□□□□ 0.07
SDC1-206ENST00000482879 PANK1Q8TE04 598 aa15.51■□□□□ 0.07
SDC1-206ENST00000482879 ATP5J2-PTCD1G3V325 749 aa15.5■□□□□ 0.07
SDC1-206ENST00000482879 RLBP1P12271 317 aa15.5■□□□□ 0.07
SDC1-206ENST00000482879 FKBP8Q14318 412 aa15.5■□□□□ 0.07
SDC1-206ENST00000482879 PDE3AQ14432 1141 aa15.5■□□□□ 0.07
SDC1-206ENST00000482879 BEND3Q5T5X7 828 aa15.5■□□□□ 0.07
SDC1-206ENST00000482879 C20orf194Q5TEA3 1177 aa15.5■□□□□ 0.07
SDC1-206ENST00000482879 PSDA5PKW4 1024 aaPredicted RBP15.49■□□□□ 0.07
SDC1-206ENST00000482879 GPTP24298 496 aa15.49■□□□□ 0.07
SDC1-206ENST00000482879 CCT4P50991 539 aaKnown RBP15.49■□□□□ 0.07
SDC1-206ENST00000482879 TBC1D9BQ66K14 1250 aa15.49■□□□□ 0.07
SDC1-206ENST00000482879 BICDL1Q6ZP65 573 aa15.49■□□□□ 0.07
SDC1-206ENST00000482879 TMEM57Q8N5G2 664 aa15.49■□□□□ 0.07
SDC1-206ENST00000482879 LINS1Q8NG48 757 aa15.49■□□□□ 0.07
SDC1-206ENST00000482879 ISCA1Q9BUE6 129 aa15.49■□□□□ 0.07
SDC1-206ENST00000482879 SRCIN1Q9C0H9 1055 aa15.49■□□□□ 0.07
SDC1-206ENST00000482879 PDGFDQ9GZP0 370 aaPredicted RBP15.49■□□□□ 0.07
SDC1-206ENST00000482879 IGKV5-2P06315 115 aa15.48■□□□□ 0.07
SDC1-206ENST00000482879 TRIM28Q13263 835 aaKnown RBP15.48■□□□□ 0.07
SDC1-206ENST00000482879 CWF19L2Q2TBE0 894 aaKnown RBP15.48■□□□□ 0.07
SDC1-206ENST00000482879 INTS3Q68E01 1043 aaKnown RBP15.48■□□□□ 0.07
SDC1-206ENST00000482879 ZNF34Q8IZ26 560 aa15.48■□□□□ 0.07
SDC1-206ENST00000482879 NLGN1Q8N2Q7 840 aa15.48■□□□□ 0.07
SDC1-206ENST00000482879 NIP7Q9Y221 180 aaKnown RBP eCLIP15.48■□□□□ 0.07
SDC1-206ENST00000482879 N4BP2Q86UW6 1770 aaPredicted RBP15.48■□□□□ 0.07
SDC1-206ENST00000482879 PXDNLA1KZ92 1463 aa15.47■□□□□ 0.07
SDC1-206ENST00000482879 NEURL1BA8MQ27 555 aa15.47■□□□□ 0.07
SDC1-206ENST00000482879 ALDH1L1O75891 902 aa15.47■□□□□ 0.07
SDC1-206ENST00000482879 MSL1Q68DK7 614 aa15.47■□□□□ 0.07
SDC1-206ENST00000482879 ITPRIPQ8IWB1 547 aa15.47■□□□□ 0.07
SDC1-206ENST00000482879 SLC16A10Q8TF71 515 aa15.47■□□□□ 0.07
SDC1-206ENST00000482879 SETDB2Q96T68 719 aa15.47■□□□□ 0.07
SDC1-206ENST00000482879 ATP10DQ9P241 1426 aa15.47■□□□□ 0.07
SDC1-206ENST00000482879 COG6Q9Y2V7 657 aa15.47■□□□□ 0.07
SDC1-206ENST00000482879 NFIXQ14938 502 aa15.46■□□□□ 0.07
SDC1-206ENST00000482879 PARP10Q53GL7 1025 aa15.46■□□□□ 0.07
SDC1-206ENST00000482879 NLRP10Q86W26 655 aa15.46■□□□□ 0.07
SDC1-206ENST00000482879 CCDC191Q8NCU4 936 aa15.46■□□□□ 0.07
SDC1-206ENST00000482879 CWC25Q9NXE8 425 aaPredicted RBP15.46■□□□□ 0.07
SDC1-206ENST00000482879 CASZ1Q86V15 1759 aa15.45■□□□□ 0.06
SDC1-206ENST00000482879 FAM177BA6PVY3 158 aa15.45■□□□□ 0.06
SDC1-206ENST00000482879 TM4SF1P30408 202 aa15.45■□□□□ 0.06
SDC1-206ENST00000482879 IRX6P78412 446 aaPredicted RBP15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms