RNA–Protein interactions for RNA: ENST00000482056.2

C9orf3-218, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best)

Gene C9orf3, Length 1,951 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-218ENST00000482056 TTC14Q96N46 770 aa18.5■□□□□ 0.55
C9orf3-218ENST00000482056 PXDNQ92626 1479 aa18.49■□□□□ 0.55
C9orf3-218ENST00000482056 CAMTA1Q9Y6Y1 1673 aa18.49■□□□□ 0.55
C9orf3-218ENST00000482056 HEG1Q9ULI3 1381 aa18.49■□□□□ 0.55
C9orf3-218ENST00000482056 HIP1O00291 1037 aa18.49■□□□□ 0.55
C9orf3-218ENST00000482056 CHAMP1Q96JM3 812 aa18.49■□□□□ 0.55
C9orf3-218ENST00000482056 LINS1Q8NG48 757 aa18.48■□□□□ 0.55
C9orf3-218ENST00000482056 EVI5LQ96CN4 794 aa18.48■□□□□ 0.55
C9orf3-218ENST00000482056 TSPY26PQ9H489 355 aa18.48■□□□□ 0.55
C9orf3-218ENST00000482056 NSFL1CQ9UNZ2 370 aaKnown RBP18.48■□□□□ 0.55
C9orf3-218ENST00000482056 ATP6V1DQ9Y5K8 247 aa18.48■□□□□ 0.55
C9orf3-218ENST00000482056 AK2P54819 239 aa18.48■□□□□ 0.55
C9orf3-218ENST00000482056 RBM33Q96EV2 1170 aaKnown RBP18.48■□□□□ 0.55
C9orf3-218ENST00000482056 SIPA1L3O60292 1781 aaPredicted RBP18.47■□□□□ 0.55
C9orf3-218ENST00000482056 TMEM87AQ8NBN3 555 aa18.47■□□□□ 0.55
C9orf3-218ENST00000482056 SPG7Q9UQ90 795 aa18.47■□□□□ 0.55
C9orf3-218ENST00000482056 SMC3Q9UQE7 1217 aa18.47■□□□□ 0.55
C9orf3-218ENST00000482056 G3BP1Q13283 466 aaKnown RBP eCLIP18.46■□□□□ 0.55
C9orf3-218ENST00000482056 ZSCAN31Q96LW9 406 aaPredicted RBP18.46■□□□□ 0.55
C9orf3-218ENST00000482056 DDX21Q9NR30 783 aaKnown RBP eCLIP18.46■□□□□ 0.55
C9orf3-218ENST00000482056 RPAP1Q9BWH6 1393 aaPredicted RBP18.46■□□□□ 0.55
C9orf3-218ENST00000482056 GRM8O00222 908 aa18.46■□□□□ 0.55
C9orf3-218ENST00000482056 ZSCAN22P10073 491 aaPredicted RBP18.46■□□□□ 0.55
C9orf3-218ENST00000482056 CASTP20810 708 aaKnown RBP18.46■□□□□ 0.55
C9orf3-218ENST00000482056 LMOD2Q6P5Q4 547 aa18.46■□□□□ 0.55
C9orf3-218ENST00000482056 USP48Q86UV5 1035 aa18.46■□□□□ 0.55
C9orf3-218ENST00000482056 AACSQ86V21 672 aa18.46■□□□□ 0.55
C9orf3-218ENST00000482056 RASEFQ8IZ41 740 aa18.46■□□□□ 0.55
C9orf3-218ENST00000482056 TM6SF1Q9BZW5 370 aa18.46■□□□□ 0.55
C9orf3-218ENST00000482056 CSPP1Q1MSJ5 1256 aa18.45■□□□□ 0.54
C9orf3-218ENST00000482056 PROSER3Q2NL68 480 aa18.45■□□□□ 0.54
C9orf3-218ENST00000482056 VPS53Q5VIR6 699 aa18.45■□□□□ 0.54
C9orf3-218ENST00000482056 SH2B1Q9NRF2 756 aaPredicted RBP18.45■□□□□ 0.54
C9orf3-218ENST00000482056 CYP46A1Q9Y6A2 500 aa18.45■□□□□ 0.54
C9orf3-218ENST00000482056 UTYO14607 1347 aa18.45■□□□□ 0.54
C9orf3-218ENST00000482056 STX6O43752 255 aa18.44■□□□□ 0.54
C9orf3-218ENST00000482056 ZKSCAN1P17029 563 aaPredicted RBP18.44■□□□□ 0.54
C9orf3-218ENST00000482056 RUFY3Q7L099 469 aa18.44■□□□□ 0.54
C9orf3-218ENST00000482056 DNAJC5Q9H3Z4 198 aa18.44■□□□□ 0.54
C9orf3-218ENST00000482056 CCDC39Q9UFE4 941 aa18.44■□□□□ 0.54
C9orf3-218ENST00000482056 NOL7Q9UMY1 257 aaKnown RBP18.44■□□□□ 0.54
C9orf3-218ENST00000482056 ADAMTS7Q9UKP4 1686 aa18.44■□□□□ 0.54
C9orf3-218ENST00000482056 LETM1O95202 739 aaPredicted RBP18.44■□□□□ 0.54
C9orf3-218ENST00000482056 MCM5P33992 734 aa18.44■□□□□ 0.54
C9orf3-218ENST00000482056 CWF19L2Q2TBE0 894 aaKnown RBP18.44■□□□□ 0.54
C9orf3-218ENST00000482056 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.44■□□□□ 0.54
C9orf3-218ENST00000482056 PDRG1Q9NUG6 133 aa18.44■□□□□ 0.54
C9orf3-218ENST00000482056 KIF1AQ12756 1690 aa18.43■□□□□ 0.54
C9orf3-218ENST00000482056 NPHP4O75161 1426 aaPredicted RBP18.43■□□□□ 0.54
C9orf3-218ENST00000482056 TPM2P07951 284 aa18.43■□□□□ 0.54
C9orf3-218ENST00000482056 NEXNQ0ZGT2 675 aa18.43■□□□□ 0.54
C9orf3-218ENST00000482056 KCNB2Q92953 911 aa18.43■□□□□ 0.54
C9orf3-218ENST00000482056 JAKMIP1Q96N16 626 aaKnown RBP18.43■□□□□ 0.54
C9orf3-218ENST00000482056 ORAI2Q96SN7 254 aa18.43■□□□□ 0.54
C9orf3-218ENST00000482056 PA2G4Q9UQ80 394 aaKnown RBP18.43■□□□□ 0.54
C9orf3-218ENST00000482056 FOXD4L6Q3SYB3 417 aaPredicted RBP18.42■□□□□ 0.54
C9orf3-218ENST00000482056 PRPF40BQ6NWY9 871 aaKnown RBP18.42■□□□□ 0.54
C9orf3-218ENST00000482056 LARP1Q6PKG0 1096 aaKnown RBP18.42■□□□□ 0.54
C9orf3-218ENST00000482056 FOXD4L3Q6VB84 417 aaPredicted RBP18.42■□□□□ 0.54
C9orf3-218ENST00000482056 FAM184AQ8NB25 1140 aa18.42■□□□□ 0.54
C9orf3-218ENST00000482056 TRPM3Q9HCF6 1732 aaPredicted RBP18.42■□□□□ 0.54
C9orf3-218ENST00000482056 CCDC171Q6TFL3 1326 aa18.42■□□□□ 0.54
C9orf3-218ENST00000482056 PDIA4P13667 645 aaKnown RBP18.42■□□□□ 0.54
C9orf3-218ENST00000482056 KCNJ4P48050 445 aa18.42■□□□□ 0.54
C9orf3-218ENST00000482056 KLHL34Q8N239 644 aa18.42■□□□□ 0.54
C9orf3-218ENST00000482056 SUCLG2Q96I99 432 aa18.42■□□□□ 0.54
C9orf3-218ENST00000482056 ZSWIM6Q9HCJ5 1215 aa18.42■□□□□ 0.54
C9orf3-218ENST00000482056 TCHHQ07283 1943 aa18.41■□□□□ 0.54
C9orf3-218ENST00000482056 OFD1O75665 1012 aa18.41■□□□□ 0.54
C9orf3-218ENST00000482056 SYT1P21579 422 aa18.41■□□□□ 0.54
C9orf3-218ENST00000482056 PSMA5P28066 241 aa18.41■□□□□ 0.54
C9orf3-218ENST00000482056 XPCQ01831 940 aaPredicted RBP18.41■□□□□ 0.54
C9orf3-218ENST00000482056 CCDC183Q5T5S1 534 aa18.41■□□□□ 0.54
C9orf3-218ENST00000482056 RIC3Q7Z5B4 369 aa18.41■□□□□ 0.54
C9orf3-218ENST00000482056 BICC1Q9H694 974 aaKnown RBP18.41■□□□□ 0.54
C9orf3-218ENST00000482056 GADD45BO75293 160 aaPredicted RBP18.41■□□□□ 0.54
C9orf3-218ENST00000482056 F13A1P00488 732 aa18.41■□□□□ 0.54
C9orf3-218ENST00000482056 UBE2HP62256 183 aa18.41■□□□□ 0.54
C9orf3-218ENST00000482056 PTH1RQ03431 593 aa18.41■□□□□ 0.54
C9orf3-218ENST00000482056 KRT28Q7Z3Y7 464 aa18.41■□□□□ 0.54
C9orf3-218ENST00000482056 RAPGEF4Q8WZA2 1011 aa18.41■□□□□ 0.54
C9orf3-218ENST00000482056 GDPD2Q9HCC8 539 aa18.41■□□□□ 0.54
C9orf3-218ENST00000482056 AIMP1Q12904 312 aaKnown RBP18.4■□□□□ 0.54
C9orf3-218ENST00000482056 UVSSAQ2YD98 709 aa18.4■□□□□ 0.54
C9orf3-218ENST00000482056 ZNF500O60304 480 aaPredicted RBP18.39■□□□□ 0.53
C9orf3-218ENST00000482056 RNF20Q5VTR2 975 aa18.39■□□□□ 0.53
C9orf3-218ENST00000482056 RNF214Q8ND24 703 aa18.39■□□□□ 0.53
C9orf3-218ENST00000482056 CNPY2Q9Y2B0 182 aa18.39■□□□□ 0.53
C9orf3-218ENST00000482056 ZKSCAN5Q9Y2L8 839 aa18.39■□□□□ 0.53
C9orf3-218ENST00000482056 PRAMEF22A3QJZ6 481 aa18.39■□□□□ 0.53
C9orf3-218ENST00000482056 NECTIN1Q15223 517 aa18.39■□□□□ 0.53
C9orf3-218ENST00000482056 ZNF790Q6PG37 636 aa18.39■□□□□ 0.53
C9orf3-218ENST00000482056 CCDC83Q8IWF9 413 aa18.39■□□□□ 0.53
C9orf3-218ENST00000482056 RBM8AQ9Y5S9 174 aaKnown RBP18.39■□□□□ 0.53
C9orf3-218ENST00000482056 SCN11AQ9UI33 1791 aa18.38■□□□□ 0.53
C9orf3-218ENST00000482056 SASH1O94885 1247 aa18.38■□□□□ 0.53
C9orf3-218ENST00000482056 GJB2P29033 226 aa18.38■□□□□ 0.53
C9orf3-218ENST00000482056 RGPD5Q99666 1765 aa18.38■□□□□ 0.53
C9orf3-218ENST00000482056 ERBB3P21860 1342 aa18.38■□□□□ 0.53
C9orf3-218ENST00000482056 MST1RQ04912 1400 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms