RNA–Protein interactions for RNA: ENST00000481800.1

COL9A3-212, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-212ENST00000481800 NIP7Q9Y221 180 aaKnown RBP eCLIP23.07■■□□□ 1.28
COL9A3-212ENST00000481800 EIF2S2P20042 333 aaKnown RBP23.06■■□□□ 1.28
COL9A3-212ENST00000481800 ZNF622Q969S3 477 aaKnown RBP eCLIP23.06■■□□□ 1.28
COL9A3-212ENST00000481800 KDM3BQ7LBC6 1761 aa23.06■■□□□ 1.28
COL9A3-212ENST00000481800 ERBB4Q15303 1308 aa23.06■■□□□ 1.28
COL9A3-212ENST00000481800 NRXN2Q9P2S2 1712 aa23.05■■□□□ 1.28
COL9A3-212ENST00000481800 ERVV-1B6SEH8 477 aa23.04■■□□□ 1.28
COL9A3-212ENST00000481800 HLFQ16534 295 aa23.04■■□□□ 1.28
COL9A3-212ENST00000481800 TPTE2Q6XPS3 522 aa23.04■■□□□ 1.28
COL9A3-212ENST00000481800 FAM177BA6PVY3 158 aa23.03■■□□□ 1.28
COL9A3-212ENST00000481800 CHL1O00533 1208 aa23.03■■□□□ 1.28
COL9A3-212ENST00000481800 C1QTNF8P60827 252 aa23.03■■□□□ 1.28
COL9A3-212ENST00000481800 C9orf131Q5VYM1 1079 aa23.03■■□□□ 1.28
COL9A3-212ENST00000481800 MAP3K15Q6ZN16 1313 aa23.03■■□□□ 1.28
COL9A3-212ENST00000481800 AFDNP55196 1824 aaKnown RBP23.03■■□□□ 1.28
COL9A3-212ENST00000481800 APAF1O14727 1248 aa23.02■■□□□ 1.28
COL9A3-212ENST00000481800 GTF2E1P29083 439 aaPredicted RBP23.02■■□□□ 1.28
COL9A3-212ENST00000481800 TTLL7Q6ZT98 887 aa23.02■■□□□ 1.28
COL9A3-212ENST00000481800 ANP32CO43423 234 aa23.01■■□□□ 1.27
COL9A3-212ENST00000481800 ZBTB3Q9H5J0 574 aa23.01■■□□□ 1.27
COL9A3-212ENST00000481800 LAMB4A4D0S4 1761 aa23■■□□□ 1.27
COL9A3-212ENST00000481800 RNF181Q9P0P0 153 aa23■■□□□ 1.27
COL9A3-212ENST00000481800 BCORQ6W2J9 1755 aa22.99■■□□□ 1.27
COL9A3-212ENST00000481800 NECTIN2Q92692 538 aa22.99■■□□□ 1.27
COL9A3-212ENST00000481800 CNKSR1Q969H4 720 aa22.99■■□□□ 1.27
COL9A3-212ENST00000481800 BRCA1P38398 1863 aaKnown RBP22.98■■□□□ 1.27
COL9A3-212ENST00000481800 CALD1Q05682 793 aaKnown RBP22.98■■□□□ 1.27
COL9A3-212ENST00000481800 STYK1Q6J9G0 422 aa22.98■■□□□ 1.27
COL9A3-212ENST00000481800 MASTLQ96GX5 879 aa22.98■■□□□ 1.27
COL9A3-212ENST00000481800 CFAP44Q96MT7 982 aa22.98■■□□□ 1.27
COL9A3-212ENST00000481800 NYXQ9GZU5 481 aa22.98■■□□□ 1.27
COL9A3-212ENST00000481800 SRGNP10124 158 aa22.97■■□□□ 1.27
COL9A3-212ENST00000481800 PDIA6Q15084 440 aa22.97■■□□□ 1.27
COL9A3-212ENST00000481800 ZNF219Q9P2Y4 722 aaPredicted RBP22.97■■□□□ 1.27
COL9A3-212ENST00000481800 C21orf2O43822 256 aa22.96■■□□□ 1.27
COL9A3-212ENST00000481800 GPTP24298 496 aa22.96■■□□□ 1.27
COL9A3-212ENST00000481800 RASSF7Q02833 373 aa22.96■■□□□ 1.27
COL9A3-212ENST00000481800 KRT24Q2M2I5 525 aa22.96■■□□□ 1.27
COL9A3-212ENST00000481800 CCDC184Q52MB2 194 aa22.96■■□□□ 1.27
COL9A3-212ENST00000481800 ANXA1P04083 346 aa22.95■■□□□ 1.26
COL9A3-212ENST00000481800 PROSER3Q2NL68 480 aa22.95■■□□□ 1.26
COL9A3-212ENST00000481800 GIGYF2Q6Y7W6 1299 aaKnown RBP22.95■■□□□ 1.26
COL9A3-212ENST00000481800 ARFGEF1Q9Y6D6 1849 aa22.95■■□□□ 1.26
COL9A3-212ENST00000481800 NPR1P16066 1061 aa22.94■■□□□ 1.26
COL9A3-212ENST00000481800 LMNB1P20700 586 aa22.94■■□□□ 1.26
COL9A3-212ENST00000481800 MRS2Q9HD23 443 aa22.94■■□□□ 1.26
COL9A3-212ENST00000481800 DDX21Q9NR30 783 aaKnown RBP eCLIP22.94■■□□□ 1.26
COL9A3-212ENST00000481800 HOXB7P09629 217 aa22.93■■□□□ 1.26
COL9A3-212ENST00000481800 GNAI1P63096 354 aa22.93■■□□□ 1.26
COL9A3-212ENST00000481800 AIMP1Q12904 312 aaKnown RBP22.93■■□□□ 1.26
COL9A3-212ENST00000481800 HDGFL1Q5TGJ6 251 aa22.93■■□□□ 1.26
COL9A3-212ENST00000481800 PRPF40BQ6NWY9 871 aaKnown RBP22.93■■□□□ 1.26
COL9A3-212ENST00000481800 LRP10Q7Z4F1 713 aa22.93■■□□□ 1.26
COL9A3-212ENST00000481800 MBIPQ9NS73 344 aa22.93■■□□□ 1.26
COL9A3-212ENST00000481800 IFT57Q9NWB7 429 aa22.93■■□□□ 1.26
COL9A3-212ENST00000481800 KLRG2A4D1S0 409 aaPredicted RBP22.92■■□□□ 1.26
COL9A3-212ENST00000481800 COPS6Q7L5N1 327 aa22.92■■□□□ 1.26
COL9A3-212ENST00000481800 NUTM1Q86Y26 1132 aa22.92■■□□□ 1.26
COL9A3-212ENST00000481800 ZNF34Q8IZ26 560 aa22.92■■□□□ 1.26
COL9A3-212ENST00000481800 XAGE3Q8WTP9 111 aa22.92■■□□□ 1.26
COL9A3-212ENST00000481800 PARP10Q53GL7 1025 aa22.91■■□□□ 1.26
COL9A3-212ENST00000481800 SOGA3Q5TF21 947 aa22.91■■□□□ 1.26
COL9A3-212ENST00000481800 DUSP27Q5VZP5 1158 aa22.91■■□□□ 1.26
COL9A3-212ENST00000481800 PPP1R42Q7Z4L9 355 aa22.91■■□□□ 1.26
COL9A3-212ENST00000481800 CHPF2Q9P2E5 772 aa22.91■■□□□ 1.26
COL9A3-212ENST00000481800 SENP3-EIF4A1A0A087X0R7 540 aa22.9■■□□□ 1.26
COL9A3-212ENST00000481800 NFKBIEO00221 500 aa22.9■■□□□ 1.26
COL9A3-212ENST00000481800 ZNF853P0CG23 659 aa22.9■■□□□ 1.26
COL9A3-212ENST00000481800 ERFEQ4G0M1 354 aa22.9■■□□□ 1.26
COL9A3-212ENST00000481800 SUSD4Q5VX71 490 aa22.9■■□□□ 1.26
COL9A3-212ENST00000481800 ANKRD31Q8N7Z5 1873 aa22.9■■□□□ 1.26
COL9A3-212ENST00000481800 DLEC1Q9Y238 1755 aa22.89■■□□□ 1.26
COL9A3-212ENST00000481800 UBN2Q6ZU65 1347 aa22.89■■□□□ 1.26
COL9A3-212ENST00000481800 KDM2BQ8NHM5 1336 aa22.89■■□□□ 1.26
COL9A3-212ENST00000481800 HSP90AB3PQ58FF7 597 aa22.89■■□□□ 1.25
COL9A3-212ENST00000481800 DBF4Q9UBU7 674 aaPredicted RBP22.89■■□□□ 1.25
COL9A3-212ENST00000481800 ZC3H4Q9UPT8 1303 aaKnown RBP22.88■■□□□ 1.25
COL9A3-212ENST00000481800 KIF3CO14782 793 aa22.88■■□□□ 1.25
COL9A3-212ENST00000481800 ALDH1B1P30837 517 aa22.88■■□□□ 1.25
COL9A3-212ENST00000481800 IBTKQ9P2D0 1353 aaPredicted RBP22.88■■□□□ 1.25
COL9A3-212ENST00000481800 UTP14AQ9BVJ6 771 aaKnown RBP22.87■■□□□ 1.25
COL9A3-212ENST00000481800 TAOK3Q9H2K8 898 aa22.87■■□□□ 1.25
COL9A3-212ENST00000481800 NMRK2Q9NPI5 230 aa22.87■■□□□ 1.25
COL9A3-212ENST00000481800 ABCC12Q96J65 1359 aa22.87■■□□□ 1.25
COL9A3-212ENST00000481800 NTSR2O95665 410 aa22.86■■□□□ 1.25
COL9A3-212ENST00000481800 PRELPP51888 382 aa22.86■■□□□ 1.25
COL9A3-212ENST00000481800 RPGRQ92834 1020 aaKnown RBP22.86■■□□□ 1.25
COL9A3-212ENST00000481800 COL11A2P13942 1736 aaPredicted RBP22.85■■□□□ 1.25
COL9A3-212ENST00000481800 ELL2O00472 640 aaPredicted RBP22.85■■□□□ 1.25
COL9A3-212ENST00000481800 CCDC93Q567U6 631 aa22.85■■□□□ 1.25
COL9A3-212ENST00000481800 HYPKQ9NX55 129 aa22.85■■□□□ 1.25
COL9A3-212ENST00000481800 CRY2Q49AN0 593 aa22.84■■□□□ 1.25
COL9A3-212ENST00000481800 C16orf71Q8IYS4 520 aaPredicted RBP22.84■■□□□ 1.25
COL9A3-212ENST00000481800 LTBP3Q9NS15 1303 aa22.83■■□□□ 1.25
COL9A3-212ENST00000481800 TCIRG1Q13488 830 aa22.83■■□□□ 1.25
COL9A3-212ENST00000481800 CCDC27Q2M243 656 aa22.83■■□□□ 1.25
COL9A3-212ENST00000481800 ANKRD13DQ6ZTN6 518 aa22.83■■□□□ 1.25
COL9A3-212ENST00000481800 PLBD2Q8NHP8 589 aa22.83■■□□□ 1.25
COL9A3-212ENST00000481800 C7orf43Q8WVR3 580 aa22.83■■□□□ 1.25
COL9A3-212ENST00000481800 NLRP3Q96P20 1036 aa22.83■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms