RNA–Protein interactions for RNA: ENST00000480744.2

LIMS3-203, Transcript of LIM zinc finger domain containing 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene LIMS3, Length 1,197 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-203ENST00000480744 PLEKHF1Q96S99 279 aa20.17■□□□□ 0.82
LIMS3-203ENST00000480744 THUMPD2Q9BTF0 503 aaKnown RBP20.17■□□□□ 0.82
LIMS3-203ENST00000480744 SLX4Q8IY92 1834 aa20.17■□□□□ 0.82
LIMS3-203ENST00000480744 ARFGEF2Q9Y6D5 1785 aa20.16■□□□□ 0.82
LIMS3-203ENST00000480744 FER1L6Q2WGJ9 1857 aa20.16■□□□□ 0.82
LIMS3-203ENST00000480744 NBPF5PQ86XG9 351 aaPredicted RBP20.16■□□□□ 0.82
LIMS3-203ENST00000480744 PNISRQ8TF01 805 aaKnown RBP20.16■□□□□ 0.82
LIMS3-203ENST00000480744 PNNQ9H307 717 aaKnown RBP20.16■□□□□ 0.82
LIMS3-203ENST00000480744 RRAGCQ9HB90 399 aa20.16■□□□□ 0.82
LIMS3-203ENST00000480744 DICER1Q9UPY3 1922 aaKnown RBP20.15■□□□□ 0.82
LIMS3-203ENST00000480744 C21orf2O43822 256 aa20.15■□□□□ 0.82
LIMS3-203ENST00000480744 PRELPP51888 382 aa20.15■□□□□ 0.82
LIMS3-203ENST00000480744 CLEC4GQ6UXB4 293 aa20.15■□□□□ 0.82
LIMS3-203ENST00000480744 NUP98P52948 1817 aa20.14■□□□□ 0.81
LIMS3-203ENST00000480744 NFKBIEO00221 500 aa20.14■□□□□ 0.81
LIMS3-203ENST00000480744 NGEFQ8N5V2 710 aa20.14■□□□□ 0.81
LIMS3-203ENST00000480744 NIP7Q9Y221 180 aaKnown RBP eCLIP20.14■□□□□ 0.81
LIMS3-203ENST00000480744 ZC3H4Q9UPT8 1303 aaKnown RBP20.13■□□□□ 0.81
LIMS3-203ENST00000480744 FAM177BA6PVY3 158 aa20.13■□□□□ 0.81
LIMS3-203ENST00000480744 RALBP1Q15311 655 aa20.13■□□□□ 0.81
LIMS3-203ENST00000480744 RBM46Q8TBY0 533 aaKnown RBP20.13■□□□□ 0.81
LIMS3-203ENST00000480744 APLP1P51693 650 aa20.12■□□□□ 0.81
LIMS3-203ENST00000480744 STYK1Q6J9G0 422 aa20.12■□□□□ 0.81
LIMS3-203ENST00000480744 CNKSR1Q969H4 720 aa20.12■□□□□ 0.81
LIMS3-203ENST00000480744 WDR90Q96KV7 1748 aa20.11■□□□□ 0.81
LIMS3-203ENST00000480744 SRGNP10124 158 aa20.11■□□□□ 0.81
LIMS3-203ENST00000480744 EIF4A1P60842 406 aaKnown RBP20.11■□□□□ 0.81
LIMS3-203ENST00000480744 DDX10Q13206 875 aaKnown RBP20.11■□□□□ 0.81
LIMS3-203ENST00000480744 HLFQ16534 295 aa20.11■□□□□ 0.81
LIMS3-203ENST00000480744 MASTLQ96GX5 879 aa20.11■□□□□ 0.81
LIMS3-203ENST00000480744 RRP7AQ9Y3A4 280 aaKnown RBP20.11■□□□□ 0.81
LIMS3-203ENST00000480744 PRPF40BQ6NWY9 871 aaKnown RBP20.1■□□□□ 0.81
LIMS3-203ENST00000480744 GLTPD2A6NH11 291 aa20.09■□□□□ 0.81
LIMS3-203ENST00000480744 MYL6BP14649 208 aa20.09■□□□□ 0.81
LIMS3-203ENST00000480744 TPTE2Q6XPS3 522 aa20.09■□□□□ 0.81
LIMS3-203ENST00000480744 GTF2E1P29083 439 aaPredicted RBP20.08■□□□□ 0.81
LIMS3-203ENST00000480744 RIPK4P57078 832 aa20.08■□□□□ 0.81
LIMS3-203ENST00000480744 TAOK3Q9H2K8 898 aa20.08■□□□□ 0.81
LIMS3-203ENST00000480744 RGL2O15211 777 aa20.07■□□□□ 0.8
LIMS3-203ENST00000480744 ERFEQ4G0M1 354 aa20.07■□□□□ 0.8
LIMS3-203ENST00000480744 KIF6Q6ZMV9 814 aa20.07■□□□□ 0.8
LIMS3-203ENST00000480744 TSPYL4Q9UJ04 414 aa20.07■□□□□ 0.8
LIMS3-203ENST00000480744 NPR1P16066 1061 aa20.06■□□□□ 0.8
LIMS3-203ENST00000480744 FSTL1Q12841 308 aa20.06■□□□□ 0.8
LIMS3-203ENST00000480744 SOGA3Q5TF21 947 aa20.06■□□□□ 0.8
LIMS3-203ENST00000480744 MAP3K15Q6ZN16 1313 aa20.05■□□□□ 0.8
LIMS3-203ENST00000480744 MYBBP1AQ9BQG0 1328 aaKnown RBP20.05■□□□□ 0.8
LIMS3-203ENST00000480744 VEGFAP15692 232 aaPredicted RBP20.05■□□□□ 0.8
LIMS3-203ENST00000480744 DPY19L2Q6NUT2 758 aa20.05■□□□□ 0.8
LIMS3-203ENST00000480744 TTLL7Q6ZT98 887 aa20.05■□□□□ 0.8
LIMS3-203ENST00000480744 ZBTB3Q9H5J0 574 aa20.05■□□□□ 0.8
LIMS3-203ENST00000480744 LTBP3Q9NS15 1303 aa20.04■□□□□ 0.8
LIMS3-203ENST00000480744 CCDC146Q8IYE0 955 aa20.04■□□□□ 0.8
LIMS3-203ENST00000480744 SMC1BQ8NDV3 1235 aa20.04■□□□□ 0.8
LIMS3-203ENST00000480744 ERVV-1B6SEH8 477 aa20.03■□□□□ 0.8
LIMS3-203ENST00000480744 GPTP24298 496 aa20.03■□□□□ 0.8
LIMS3-203ENST00000480744 TMPOP42166 694 aaKnown RBP20.03■□□□□ 0.8
LIMS3-203ENST00000480744 HTRA3P83110 453 aa20.03■□□□□ 0.8
LIMS3-203ENST00000480744 LMOD3Q0VAK6 560 aa20.03■□□□□ 0.8
LIMS3-203ENST00000480744 CCDC93Q567U6 631 aa20.03■□□□□ 0.8
LIMS3-203ENST00000480744 NUTM1Q86Y26 1132 aa20.03■□□□□ 0.8
LIMS3-203ENST00000480744 KLRG2A4D1S0 409 aaPredicted RBP20.02■□□□□ 0.8
LIMS3-203ENST00000480744 EIF2S2P20042 333 aaKnown RBP20.02■□□□□ 0.8
LIMS3-203ENST00000480744 NEUROD2Q15784 382 aa20.02■□□□□ 0.8
LIMS3-203ENST00000480744 NYXQ9GZU5 481 aa20.02■□□□□ 0.8
LIMS3-203ENST00000480744 ABCC12Q96J65 1359 aa20.01■□□□□ 0.79
LIMS3-203ENST00000480744 WDR43Q15061 677 aaKnown RBP eCLIP20.01■□□□□ 0.79
LIMS3-203ENST00000480744 ERBB4Q15303 1308 aa20.01■□□□□ 0.79
LIMS3-203ENST00000480744 OLFM4Q6UX06 510 aa20■□□□□ 0.79
LIMS3-203ENST00000480744 C7orf43Q8WVR3 580 aa20■□□□□ 0.79
LIMS3-203ENST00000480744 ALDH1B1P30837 517 aa19.99■□□□□ 0.79
LIMS3-203ENST00000480744 DNAJC5GQ8N7S2 189 aa19.99■□□□□ 0.79
LIMS3-203ENST00000480744 UBN2Q6ZU65 1347 aa19.99■□□□□ 0.79
LIMS3-203ENST00000480744 ANKRD36CQ5JPF3 1778 aa19.98■□□□□ 0.79
LIMS3-203ENST00000480744 ANXA1P04083 346 aa19.98■□□□□ 0.79
LIMS3-203ENST00000480744 NECTIN2Q92692 538 aa19.98■□□□□ 0.79
LIMS3-203ENST00000480744 POTECB2RU33 542 aa19.97■□□□□ 0.79
LIMS3-203ENST00000480744 DDNO94850 711 aaPredicted RBP19.97■□□□□ 0.79
LIMS3-203ENST00000480744 FKBP4Q02790 459 aaKnown RBP eCLIP19.97■□□□□ 0.79
LIMS3-203ENST00000480744 SUSD4Q5VX71 490 aa19.97■□□□□ 0.79
LIMS3-203ENST00000480744 GIGYF2Q6Y7W6 1299 aaKnown RBP19.97■□□□□ 0.79
LIMS3-203ENST00000480744 RPGRQ92834 1020 aaKnown RBP19.97■□□□□ 0.79
LIMS3-203ENST00000480744 RUNDC1Q96C34 613 aa19.97■□□□□ 0.79
LIMS3-203ENST00000480744 ZNF277Q9NRM2 450 aaPredicted RBP19.97■□□□□ 0.79
LIMS3-203ENST00000480744 BABAM1Q9NWV8 329 aa19.97■□□□□ 0.79
LIMS3-203ENST00000480744 LAS1LQ9Y4W2 734 aaKnown RBP19.97■□□□□ 0.79
LIMS3-203ENST00000480744 IBTKQ9P2D0 1353 aaPredicted RBP19.96■□□□□ 0.79
LIMS3-203ENST00000480744 PROSER3Q2NL68 480 aa19.96■□□□□ 0.79
LIMS3-203ENST00000480744 RTKN2Q8IZC4 609 aa19.96■□□□□ 0.79
LIMS3-203ENST00000480744 PDIA6Q15084 440 aa19.95■□□□□ 0.78
LIMS3-203ENST00000480744 CRY2Q49AN0 593 aa19.95■□□□□ 0.78
LIMS3-203ENST00000480744 ZNF34Q8IZ26 560 aa19.95■□□□□ 0.78
LIMS3-203ENST00000480744 SCN4AP35499 1836 aa19.95■□□□□ 0.78
LIMS3-203ENST00000480744 AIMP1Q12904 312 aaKnown RBP19.94■□□□□ 0.78
LIMS3-203ENST00000480744 PPP1R42Q7Z4L9 355 aa19.94■□□□□ 0.78
LIMS3-203ENST00000480744 KLRG1Q96E93 195 aa19.94■□□□□ 0.78
LIMS3-203ENST00000480744 RIC1Q4ADV7 1423 aa19.93■□□□□ 0.78
LIMS3-203ENST00000480744 NTSR2O95665 410 aa19.93■□□□□ 0.78
LIMS3-203ENST00000480744 LRP10Q7Z4F1 713 aa19.93■□□□□ 0.78
LIMS3-203ENST00000480744 SYNE4Q8N205 404 aa19.93■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms