RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 ALDH1L2Q3SY69 923 aa10.21□□□□□ -0.78
SYNE1-224ENST00000478916 BBXQ8WY36 941 aaPredicted RBP10.21□□□□□ -0.78
SYNE1-224ENST00000478916 DNAI2Q9GZS0 605 aa10.2□□□□□ -0.78
SYNE1-224ENST00000478916 U3KPZ7 1027 aaPredicted RBP10.2□□□□□ -0.78
SYNE1-224ENST00000478916 USO1O60763 962 aaKnown RBP10.2□□□□□ -0.78
SYNE1-224ENST00000478916 IFNL2Q8IZJ0 200 aa10.2□□□□□ -0.78
SYNE1-224ENST00000478916 IL1RAPL2Q9NP60 686 aa10.2□□□□□ -0.78
SYNE1-224ENST00000478916 MIS18AQ9NYP9 233 aa10.2□□□□□ -0.78
SYNE1-224ENST00000478916 CLIP2Q9UDT6 1046 aa10.2□□□□□ -0.78
SYNE1-224ENST00000478916 NOS1P29475 1434 aa10.2□□□□□ -0.78
SYNE1-224ENST00000478916 JAKMIP1Q96N16 626 aaKnown RBP10.2□□□□□ -0.78
SYNE1-224ENST00000478916 DDX23Q9BUQ8 820 aaKnown RBP10.2□□□□□ -0.78
SYNE1-224ENST00000478916 MKNK2Q9HBH9 465 aa10.2□□□□□ -0.78
SYNE1-224ENST00000478916 DHX29Q7Z478 1369 aaKnown RBP10.2□□□□□ -0.78
SYNE1-224ENST00000478916 MATR3P43243 847 aaKnown RBP eCLIP10.2□□□□□ -0.78
SYNE1-224ENST00000478916 GLRX3O76003 335 aaKnown RBP10.2□□□□□ -0.78
SYNE1-224ENST00000478916 TTLL12Q14166 644 aaPredicted RBP10.2□□□□□ -0.78
SYNE1-224ENST00000478916 FKBP15Q5T1M5 1219 aa10.2□□□□□ -0.78
SYNE1-224ENST00000478916 HOOK3Q86VS8 718 aa10.2□□□□□ -0.78
SYNE1-224ENST00000478916 SPDYE4A6NLX3 237 aa10.2□□□□□ -0.78
SYNE1-224ENST00000478916 DBF4Q9UBU7 674 aaPredicted RBP10.2□□□□□ -0.78
SYNE1-224ENST00000478916 SCAF11Q99590 1463 aaKnown RBP10.2□□□□□ -0.78
SYNE1-224ENST00000478916 VPS36Q86VN1 386 aa10.2□□□□□ -0.78
SYNE1-224ENST00000478916 PPP1R12BO60237 982 aaPredicted RBP10.19□□□□□ -0.78
SYNE1-224ENST00000478916 PRIMPOLQ96LW4 560 aa10.19□□□□□ -0.78
SYNE1-224ENST00000478916 SSBP05455 408 aaKnown RBP eCLIP10.19□□□□□ -0.78
SYNE1-224ENST00000478916 GSDMDP57764 484 aa10.19□□□□□ -0.78
SYNE1-224ENST00000478916 URB2Q14146 1524 aaKnown RBP10.19□□□□□ -0.78
SYNE1-224ENST00000478916 PAXBP1Q9Y5B6 917 aa10.19□□□□□ -0.78
SYNE1-224ENST00000478916 PPP4R3AQ6IN85 833 aa10.19□□□□□ -0.78
SYNE1-224ENST00000478916 KRT222Q8N1A0 295 aa10.19□□□□□ -0.78
SYNE1-224ENST00000478916 BICRAQ9NZM4 1560 aa10.19□□□□□ -0.78
SYNE1-224ENST00000478916 GOLGA6L9A6NEM1 432 aa10.19□□□□□ -0.78
SYNE1-224ENST00000478916 SEPT6Q14141 434 aa10.19□□□□□ -0.78
SYNE1-224ENST00000478916 CDC5LQ99459 802 aaKnown RBP10.19□□□□□ -0.78
SYNE1-224ENST00000478916 ST5P78524 1137 aa10.18□□□□□ -0.78
SYNE1-224ENST00000478916 CAMK4Q16566 473 aa10.18□□□□□ -0.78
SYNE1-224ENST00000478916 NAPBQ9H115 298 aa10.18□□□□□ -0.78
SYNE1-224ENST00000478916 MAP3K1Q13233 1512 aa10.18□□□□□ -0.78
SYNE1-224ENST00000478916 PPP1R42Q7Z4L9 355 aa10.18□□□□□ -0.78
SYNE1-224ENST00000478916 FBF1Q8TES7 1133 aa10.18□□□□□ -0.78
SYNE1-224ENST00000478916 C16orf45Q96MC5 204 aaPredicted RBP10.18□□□□□ -0.78
SYNE1-224ENST00000478916 ADGRF5Q8IZF2 1346 aa10.18□□□□□ -0.78
SYNE1-224ENST00000478916 CCDC196A0A1B0GTZ2 297 aa10.18□□□□□ -0.78
SYNE1-224ENST00000478916 MX1P20591 662 aa10.18□□□□□ -0.78
SYNE1-224ENST00000478916 EHMT1Q9H9B1 1298 aa10.18□□□□□ -0.78
SYNE1-224ENST00000478916 HLTFQ14527 1009 aaKnown RBP eCLIP10.18□□□□□ -0.78
SYNE1-224ENST00000478916 CACNA2D4Q7Z3S7 1137 aa10.18□□□□□ -0.78
SYNE1-224ENST00000478916 NUTM1Q86Y26 1132 aa10.18□□□□□ -0.78
SYNE1-224ENST00000478916 CEP112Q8N8E3 955 aa10.18□□□□□ -0.78
SYNE1-224ENST00000478916 KDM5BQ9UGL1 1544 aa10.18□□□□□ -0.78
SYNE1-224ENST00000478916 EMILIN1Q9Y6C2 1016 aa10.18□□□□□ -0.78
SYNE1-224ENST00000478916 CLGNO14967 610 aa10.18□□□□□ -0.78
SYNE1-224ENST00000478916 CTAGE5O15320 804 aa10.18□□□□□ -0.78
SYNE1-224ENST00000478916 RFC4P35249 363 aa10.17□□□□□ -0.78
SYNE1-224ENST00000478916 PAXIP1Q6ZW49 1069 aaPredicted RBP10.17□□□□□ -0.78
SYNE1-224ENST00000478916 DDX46Q7L014 1031 aaKnown RBP10.17□□□□□ -0.78
SYNE1-224ENST00000478916 TMEM57Q8N5G2 664 aa10.17□□□□□ -0.78
SYNE1-224ENST00000478916 CUL5Q93034 780 aa10.17□□□□□ -0.78
SYNE1-224ENST00000478916 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.17□□□□□ -0.78
SYNE1-224ENST00000478916 V9GYY5 206 aaPredicted RBP10.17□□□□□ -0.78
SYNE1-224ENST00000478916 HSF2BPO75031 334 aa10.17□□□□□ -0.78
SYNE1-224ENST00000478916 FGFR1OPO95684 399 aaKnown RBP10.17□□□□□ -0.78
SYNE1-224ENST00000478916 SLFN5Q08AF3 891 aa10.17□□□□□ -0.78
SYNE1-224ENST00000478916 CCDC6Q16204 474 aa10.17□□□□□ -0.78
SYNE1-224ENST00000478916 WDR66Q8TBY9 1149 aa10.17□□□□□ -0.78
SYNE1-224ENST00000478916 RNF41Q9H4P4 317 aaPredicted RBP10.17□□□□□ -0.78
SYNE1-224ENST00000478916 ALS2CR12Q96Q35 445 aa10.17□□□□□ -0.78
SYNE1-224ENST00000478916 TSG101Q99816 390 aa10.17□□□□□ -0.78
SYNE1-224ENST00000478916 NPHP3Q7Z494 1330 aa10.17□□□□□ -0.78
SYNE1-224ENST00000478916 FSD2A1L4K1 749 aa10.17□□□□□ -0.78
SYNE1-224ENST00000478916 MINDY4BA8MYZ0 360 aa10.17□□□□□ -0.78
SYNE1-224ENST00000478916 UBAP1LF5GYI3 381 aa10.17□□□□□ -0.78
SYNE1-224ENST00000478916 MAATS1Q7Z4T9 603 aa10.17□□□□□ -0.78
SYNE1-224ENST00000478916 ZNF444Q8N0Y2 327 aaPredicted RBP10.17□□□□□ -0.78
SYNE1-224ENST00000478916 TRMT1Q9NXH9 659 aaKnown RBP10.17□□□□□ -0.78
SYNE1-224ENST00000478916 ANKRD24Q8TF21 1146 aa10.16□□□□□ -0.78
SYNE1-224ENST00000478916 PTPRCP08575 1304 aa10.16□□□□□ -0.78
SYNE1-224ENST00000478916 CCDC160A6NGH7 325 aa10.16□□□□□ -0.78
SYNE1-224ENST00000478916 SNW1Q13573 536 aaKnown RBP10.16□□□□□ -0.78
SYNE1-224ENST00000478916 CTCFLQ8NI51 663 aaPredicted RBP10.16□□□□□ -0.78
SYNE1-224ENST00000478916 SCLT1Q96NL6 688 aa10.16□□□□□ -0.78
SYNE1-224ENST00000478916 NSRP1Q9H0G5 558 aaKnown RBP10.16□□□□□ -0.78
SYNE1-224ENST00000478916 DNAJC5BQ9UF47 199 aa10.16□□□□□ -0.78
SYNE1-224ENST00000478916 EXOC6BQ9Y2D4 811 aa10.16□□□□□ -0.78
SYNE1-224ENST00000478916 C6orf229H3BNL8 230 aa10.16□□□□□ -0.78
SYNE1-224ENST00000478916 C14orf93Q9H972 538 aaKnown RBP10.16□□□□□ -0.78
SYNE1-224ENST00000478916 TTF1Q15361 905 aaPredicted RBP10.16□□□□□ -0.78
SYNE1-224ENST00000478916 GRIPAP1Q4V328 841 aa10.16□□□□□ -0.78
SYNE1-224ENST00000478916 CEP135Q66GS9 1140 aa10.16□□□□□ -0.78
SYNE1-224ENST00000478916 IQCA1Q86XH1 822 aa10.16□□□□□ -0.78
SYNE1-224ENST00000478916 THUMPD2Q9BTF0 503 aaKnown RBP10.16□□□□□ -0.78
SYNE1-224ENST00000478916 TTC21AQ8NDW8 1320 aa10.16□□□□□ -0.78
SYNE1-224ENST00000478916 YEATS4O95619 227 aa10.16□□□□□ -0.78
SYNE1-224ENST00000478916 FERP16591 822 aa10.16□□□□□ -0.78
SYNE1-224ENST00000478916 UHRF1BP1LA0JNW5 1464 aa10.16□□□□□ -0.78
SYNE1-224ENST00000478916 LDHCP07864 332 aa10.16□□□□□ -0.78
SYNE1-224ENST00000478916 HMGB1P09429 215 aaKnown RBP10.16□□□□□ -0.78
SYNE1-224ENST00000478916 CASTP20810 708 aaKnown RBP10.16□□□□□ -0.78
SYNE1-224ENST00000478916 CCDC96Q2M329 555 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms