RNA–Protein interactions for RNA: ENST00000477935.1

VPS50-214, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-214ENST00000477935 FIGNL1Q6PIW4 674 aa8.86□□□□□ -0.99
VPS50-214ENST00000477935 RHPN1Q8TCX5 695 aa8.86□□□□□ -0.99
VPS50-214ENST00000477935 PRIMPOLQ96LW4 560 aa8.86□□□□□ -0.99
VPS50-214ENST00000477935 ZCCHC2Q9C0B9 1178 aaKnown RBP8.86□□□□□ -0.99
VPS50-214ENST00000477935 GPC6Q9Y625 555 aaPredicted RBP8.86□□□□□ -0.99
VPS50-214ENST00000477935 OCLNQ16625 522 aa8.85□□□□□ -0.99
VPS50-214ENST00000477935 KLRG1Q96E93 195 aa8.85□□□□□ -0.99
VPS50-214ENST00000477935 NGLY1Q96IV0 654 aa8.85□□□□□ -0.99
VPS50-214ENST00000477935 CFHR5Q9BXR6 569 aa8.85□□□□□ -0.99
VPS50-214ENST00000477935 GJA3Q9Y6H8 435 aa8.85□□□□□ -0.99
VPS50-214ENST00000477935 BNIP3LO60238 219 aa8.84□□□□□ -0.99
VPS50-214ENST00000477935 FKBP5Q13451 457 aaPredicted RBP8.84□□□□□ -0.99
VPS50-214ENST00000477935 CLP1Q92989 425 aaKnown RBP8.84□□□□□ -0.99
VPS50-214ENST00000477935 ABHD17AQ96GS6 310 aa8.84□□□□□ -0.99
VPS50-214ENST00000477935 NDFIP2Q9NV92 336 aa8.84□□□□□ -0.99
VPS50-214ENST00000477935 DCAF1Q9Y4B6 1507 aa8.84□□□□□ -0.99
VPS50-214ENST00000477935 INSM1Q01101 510 aaPredicted RBP8.83□□□□□ -1
VPS50-214ENST00000477935 MBIPQ9NS73 344 aa8.83□□□□□ -1
VPS50-214ENST00000477935 ATXN7L1Q9ULK2 861 aaPredicted RBP8.83□□□□□ -1
VPS50-214ENST00000477935 PHF24Q9UPV7 400 aa8.83□□□□□ -1
VPS50-214ENST00000477935 PCDHGC4Q9Y5F7 938 aa8.83□□□□□ -1
VPS50-214ENST00000477935 TMEM88BA6NKF7 163 aa8.82□□□□□ -1
VPS50-214ENST00000477935 ATXN7O15265 892 aaPredicted RBP8.82□□□□□ -1
VPS50-214ENST00000477935 SAMD5Q5TGI4 173 aa8.82□□□□□ -1
VPS50-214ENST00000477935 LRRC69Q6ZNQ3 347 aa8.82□□□□□ -1
VPS50-214ENST00000477935 HSH2DQ96JZ2 352 aa8.82□□□□□ -1
VPS50-214ENST00000477935 NEUROD4Q9HD90 331 aa8.82□□□□□ -1
VPS50-214ENST00000477935 CXXC1Q9P0U4 656 aaPredicted RBP8.82□□□□□ -1
VPS50-214ENST00000477935 SLAIN2Q9P270 581 aa8.82□□□□□ -1
VPS50-214ENST00000477935 DCDC2BA2VCK2 349 aa8.81□□□□□ -1
VPS50-214ENST00000477935 MX2P20592 715 aa8.81□□□□□ -1
VPS50-214ENST00000477935 RTN1Q16799 776 aa8.81□□□□□ -1
VPS50-214ENST00000477935 VTI1AQ96AJ9 217 aa8.81□□□□□ -1
VPS50-214ENST00000477935 FGFR3P22607 806 aa8.8□□□□□ -1
VPS50-214ENST00000477935 LORP23490 312 aaPredicted RBP8.8□□□□□ -1
VPS50-214ENST00000477935 SRSF11Q05519 484 aaKnown RBP8.8□□□□□ -1
VPS50-214ENST00000477935 ZNF280CQ8ND82 737 aa8.8□□□□□ -1
VPS50-214ENST00000477935 SUSD3Q96L08 255 aa8.8□□□□□ -1
VPS50-214ENST00000477935 QTRT2Q9H974 415 aaKnown RBP8.8□□□□□ -1
VPS50-214ENST00000477935 ANKIB1Q9P2G1 1089 aa8.8□□□□□ -1
VPS50-214ENST00000477935 IGF1RP08069 1367 aa8.79□□□□□ -1
VPS50-214ENST00000477935 KHNYNO15037 678 aaKnown RBP8.79□□□□□ -1
VPS50-214ENST00000477935 ADAMTS2O95450 1211 aa8.79□□□□□ -1
VPS50-214ENST00000477935 FAM157BP0CG42 384 aa8.79□□□□□ -1
VPS50-214ENST00000477935 SLURP2P0DP57 97 aa8.79□□□□□ -1
VPS50-214ENST00000477935 MAPTP10636 758 aaKnown RBP8.79□□□□□ -1
VPS50-214ENST00000477935 ATP2B4P23634 1241 aa8.79□□□□□ -1
VPS50-214ENST00000477935 TNP2Q05952 138 aa8.79□□□□□ -1
VPS50-214ENST00000477935 ZSCAN1Q8NBB4 408 aa8.79□□□□□ -1
VPS50-214ENST00000477935 HCN2Q9UL51 889 aa8.79□□□□□ -1
VPS50-214ENST00000477935 HIF1AQ16665 826 aa8.78□□□□□ -1
VPS50-214ENST00000477935 MYO19Q96H55 970 aa8.78□□□□□ -1
VPS50-214ENST00000477935 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.78□□□□□ -1
VPS50-214ENST00000477935 NSFL1CQ9UNZ2 370 aaKnown RBP8.78□□□□□ -1
VPS50-214ENST00000477935 CARNS1A5YM72 827 aa8.77□□□□□ -1.01
VPS50-214ENST00000477935 EFSO43281 561 aa8.77□□□□□ -1.01
VPS50-214ENST00000477935 MKNK1Q9BUB5 465 aa8.77□□□□□ -1.01
VPS50-214ENST00000477935 CD33P20138 364 aa8.76□□□□□ -1.01
VPS50-214ENST00000477935 CTBSQ01459 385 aa8.76□□□□□ -1.01
VPS50-214ENST00000477935 CAPN12Q6ZSI9 719 aa8.76□□□□□ -1.01
VPS50-214ENST00000477935 COL26A1Q96A83 441 aa8.76□□□□□ -1.01
VPS50-214ENST00000477935 KLK14Q9P0G3 267 aa8.76□□□□□ -1.01
VPS50-214ENST00000477935 LRFN2Q9ULH4 789 aa8.76□□□□□ -1.01
VPS50-214ENST00000477935 BCS1LQ9Y276 419 aa8.76□□□□□ -1.01
VPS50-214ENST00000477935 C2CD2LO14523 706 aa8.75□□□□□ -1.01
VPS50-214ENST00000477935 BMP4P12644 408 aa8.75□□□□□ -1.01
VPS50-214ENST00000477935 TYRO3Q06418 890 aa8.75□□□□□ -1.01
VPS50-214ENST00000477935 DGKZQ13574 1117 aa8.75□□□□□ -1.01
VPS50-214ENST00000477935 BTLAQ7Z6A9 289 aa8.75□□□□□ -1.01
VPS50-214ENST00000477935 STRN4Q9NRL3 753 aa8.75□□□□□ -1.01
VPS50-214ENST00000477935 MARK1Q9P0L2 795 aa8.75□□□□□ -1.01
VPS50-214ENST00000477935 USTQ9Y2C2 406 aa8.75□□□□□ -1.01
VPS50-214ENST00000477935 NCAPD3P42695 1498 aa8.75□□□□□ -1.01
VPS50-214ENST00000477935 TGFBR3LH3BV60 316 aa8.74□□□□□ -1.01
VPS50-214ENST00000477935 PTCD1O75127 700 aaKnown RBP8.74□□□□□ -1.01
VPS50-214ENST00000477935 MAP2K3P46734 347 aa8.74□□□□□ -1.01
VPS50-214ENST00000477935 LAMC2Q13753 1193 aa8.74□□□□□ -1.01
VPS50-214ENST00000477935 C11orf91Q3C1V1 193 aa8.74□□□□□ -1.01
VPS50-214ENST00000477935 COX20Q5RI15 118 aa8.74□□□□□ -1.01
VPS50-214ENST00000477935 FAM182BQ5T319 152 aa8.74□□□□□ -1.01
VPS50-214ENST00000477935 IER5Q5VY09 327 aa8.74□□□□□ -1.01
VPS50-214ENST00000477935 WHAMMQ8TF30 809 aa8.74□□□□□ -1.01
VPS50-214ENST00000477935 CEP63Q96MT8 703 aa8.74□□□□□ -1.01
VPS50-214ENST00000477935 BRD7Q9NPI1 651 aa8.74□□□□□ -1.01
VPS50-214ENST00000477935 ZNF385CQ66K41 422 aaPredicted RBP8.73□□□□□ -1.01
VPS50-214ENST00000477935 C16orf46Q6P387 395 aa8.73□□□□□ -1.01
VPS50-214ENST00000477935 RETREG2Q8NC44 543 aa8.73□□□□□ -1.01
VPS50-214ENST00000477935 SAP130Q9H0E3 1048 aa8.73□□□□□ -1.01
VPS50-214ENST00000477935 SSFA2P28290 1259 aa8.72□□□□□ -1.01
VPS50-214ENST00000477935 SFSWAPQ12872 951 aaKnown RBP8.72□□□□□ -1.01
VPS50-214ENST00000477935 NAA30Q147X3 362 aaPredicted RBP8.72□□□□□ -1.01
VPS50-214ENST00000477935 LYPD4Q6UWN0 246 aa8.72□□□□□ -1.01
VPS50-214ENST00000477935 SVOPQ8N4V2 548 aa8.72□□□□□ -1.01
VPS50-214ENST00000477935 ACDQ96AP0 544 aa8.72□□□□□ -1.01
VPS50-214ENST00000477935 DMGDHQ9UI17 866 aaKnown RBP8.72□□□□□ -1.01
VPS50-214ENST00000477935 ZCCHC6Q5VYS8 1495 aaKnown RBP8.71□□□□□ -1.01
VPS50-214ENST00000477935 CELA2BP08218 269 aaPredicted RBP8.71□□□□□ -1.02
VPS50-214ENST00000477935 SCNN1AP37088 669 aa8.71□□□□□ -1.02
VPS50-214ENST00000477935 OXCT2Q9BYC2 517 aaPredicted RBP8.71□□□□□ -1.02
VPS50-214ENST00000477935 KCNQ4P56696 695 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms