RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, human

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-212	ENST00000477520	PRSS36	Q5K4E3	855 aa		6.79	□□□□□ -1.32
PTCD3-212	ENST00000477520	ELOA3	Q8NG57	546 aa		6.79	□□□□□ -1.32
PTCD3-212	ENST00000477520	CHIC2	Q9UKJ5	165 aa		6.79	□□□□□ -1.32
PTCD3-212	ENST00000477520	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	6.79	□□□□□ -1.32
PTCD3-212	ENST00000477520	ERCC6	Q03468	1493 aa		6.79	□□□□□ -1.32
PTCD3-212	ENST00000477520	ERICH6B	Q5W0A0	696 aa		6.78	□□□□□ -1.32
PTCD3-212	ENST00000477520	BANK1	Q8NDB2	785 aa		6.78	□□□□□ -1.32
PTCD3-212	ENST00000477520	KRTAP9-9	Q9BYP9	154 aa		6.78	□□□□□ -1.32
PTCD3-212	ENST00000477520	KRTAP9-4	Q9BYQ2	154 aa		6.78	□□□□□ -1.32
PTCD3-212	ENST00000477520	SERTAD1	Q9UHV2	236 aa		6.78	□□□□□ -1.32
PTCD3-212	ENST00000477520	FANCD2	Q9BXW9	1451 aa		6.78	□□□□□ -1.32
PTCD3-212	ENST00000477520	NBPF1	Q3BBV0	1214 aa		6.77	□□□□□ -1.33
PTCD3-212	ENST00000477520	PRRT3	Q5FWE3	981 aa		6.77	□□□□□ -1.33
PTCD3-212	ENST00000477520	C8orf86	Q6ZUL3	223 aa		6.77	□□□□□ -1.33
PTCD3-212	ENST00000477520	SYT9	Q86SS6	491 aa		6.77	□□□□□ -1.33
PTCD3-212	ENST00000477520	IL27	Q8NEV9	243 aa		6.77	□□□□□ -1.33
PTCD3-212	ENST00000477520	MARK1	Q9P0L2	795 aa		6.77	□□□□□ -1.33
PTCD3-212	ENST00000477520	STARD13	Q9Y3M8	1113 aa		6.77	□□□□□ -1.33
PTCD3-212	ENST00000477520	CEP164	Q9UPV0	1460 aa		6.77	□□□□□ -1.33
PTCD3-212	ENST00000477520	APBA3	O96018	575 aa		6.76	□□□□□ -1.33
PTCD3-212	ENST00000477520	GRIK4	Q16099	956 aa		6.76	□□□□□ -1.33
PTCD3-212	ENST00000477520	SLFNL1	Q499Z3	407 aa		6.76	□□□□□ -1.33
PTCD3-212	ENST00000477520	SAMD5	Q5TGI4	173 aa		6.76	□□□□□ -1.33
PTCD3-212	ENST00000477520	KRTAP19-1	Q8IUB9	90 aa		6.76	□□□□□ -1.33
PTCD3-212	ENST00000477520	ZDHHC3	Q9NYG2	299 aa		6.76	□□□□□ -1.33
PTCD3-212	ENST00000477520	SPDYE3	A6NKU9	549 aa		6.75	□□□□□ -1.33
PTCD3-212	ENST00000477520	TMEM229A	B2RXF0	380 aa		6.75	□□□□□ -1.33
PTCD3-212	ENST00000477520		M0R082	166 aa		6.75	□□□□□ -1.33
PTCD3-212	ENST00000477520	TAT	P17735	454 aa	Predicted RBP	6.75	□□□□□ -1.33
PTCD3-212	ENST00000477520	ZNF417	Q8TAU3	575 aa		6.75	□□□□□ -1.33
PTCD3-212	ENST00000477520	ZNF587	Q96SQ5	575 aa	Predicted RBP	6.75	□□□□□ -1.33
PTCD3-212	ENST00000477520	PARP3	Q9Y6F1	533 aa		6.75	□□□□□ -1.33
PTCD3-212	ENST00000477520		A6NJY4	79 aa		6.74	□□□□□ -1.33
PTCD3-212	ENST00000477520	CDK2AP1	O14519	115 aa		6.74	□□□□□ -1.33
PTCD3-212	ENST00000477520	ALAS2	P22557	587 aa		6.74	□□□□□ -1.33
PTCD3-212	ENST00000477520	MTFR1	Q15390	333 aa		6.74	□□□□□ -1.33
PTCD3-212	ENST00000477520	SLC4A9	Q96Q91	983 aa		6.74	□□□□□ -1.33
PTCD3-212	ENST00000477520	CABP1	Q9NZU7	370 aa		6.74	□□□□□ -1.33
PTCD3-212	ENST00000477520	TBC1D2B	Q9UPU7	963 aa		6.74	□□□□□ -1.33
PTCD3-212	ENST00000477520	GJA3	Q9Y6H8	435 aa		6.74	□□□□□ -1.33
PTCD3-212	ENST00000477520	ABCC8	Q09428	1581 aa		6.74	□□□□□ -1.33
PTCD3-212	ENST00000477520	ADARB2-AS1	A8MUL3	147 aa		6.73	□□□□□ -1.33
PTCD3-212	ENST00000477520	SIN3B	O75182	1162 aa		6.73	□□□□□ -1.33
PTCD3-212	ENST00000477520	ALB	P02768	609 aa		6.73	□□□□□ -1.33
PTCD3-212	ENST00000477520	NID1	P14543	1247 aa		6.73	□□□□□ -1.33
PTCD3-212	ENST00000477520	TXLNA	P40222	546 aa		6.73	□□□□□ -1.33
PTCD3-212	ENST00000477520	IRF5	Q13568	498 aa		6.73	□□□□□ -1.33
PTCD3-212	ENST00000477520	LAMC2	Q13753	1193 aa		6.73	□□□□□ -1.33
PTCD3-212	ENST00000477520	NBPF11	Q86T75	865 aa		6.73	□□□□□ -1.33
PTCD3-212	ENST00000477520	CCER1	Q8TC90	406 aa	Predicted RBP	6.73	□□□□□ -1.33
PTCD3-212	ENST00000477520	SIRT1	Q96EB6	747 aa		6.73	□□□□□ -1.33
PTCD3-212	ENST00000477520	KIF21A	Q7Z4S6	1674 aa		6.73	□□□□□ -1.33
PTCD3-212	ENST00000477520	EIF4G2	P78344	907 aa	Known RBP eCLIP	6.72	□□□□□ -1.33
PTCD3-212	ENST00000477520	TRIM28	Q13263	835 aa	Known RBP	6.72	□□□□□ -1.33
PTCD3-212	ENST00000477520	MICALL1	Q8N3F8	863 aa		6.72	□□□□□ -1.33
PTCD3-212	ENST00000477520	SLC30A3	Q99726	388 aa		6.72	□□□□□ -1.33
PTCD3-212	ENST00000477520	PRDM6	Q9NQX0	595 aa		6.72	□□□□□ -1.33
PTCD3-212	ENST00000477520	MRC2	Q9UBG0	1479 aa		6.72	□□□□□ -1.33
PTCD3-212	ENST00000477520	LOC105371045	A0A1W2PR82	267 aa		6.71	□□□□□ -1.34
PTCD3-212	ENST00000477520	SFSWAP	Q12872	951 aa	Known RBP	6.71	□□□□□ -1.34
PTCD3-212	ENST00000477520	BICDL1	Q6ZP65	573 aa		6.71	□□□□□ -1.34
PTCD3-212	ENST00000477520	ZDHHC1	Q8WTX9	485 aa		6.71	□□□□□ -1.34
PTCD3-212	ENST00000477520	NACC1	Q96RE7	527 aa		6.71	□□□□□ -1.34
PTCD3-212	ENST00000477520	HYAL3	O43820	417 aa	Predicted RBP	6.7	□□□□□ -1.34
PTCD3-212	ENST00000477520	SELP	P16109	830 aa		6.7	□□□□□ -1.34
PTCD3-212	ENST00000477520	LRP8	Q14114	963 aa		6.7	□□□□□ -1.34
PTCD3-212	ENST00000477520	LRRC69	Q6ZNQ3	347 aa		6.7	□□□□□ -1.34
PTCD3-212	ENST00000477520	PLPP7	Q8NBV4	271 aa		6.7	□□□□□ -1.34
PTCD3-212	ENST00000477520	C7orf43	Q8WVR3	580 aa		6.7	□□□□□ -1.34
PTCD3-212	ENST00000477520	TNFRSF25	Q93038	417 aa		6.7	□□□□□ -1.34
PTCD3-212	ENST00000477520	WRN	Q14191	1432 aa	Predicted RBP eCLIP	6.69	□□□□□ -1.34
PTCD3-212	ENST00000477520	APBB1	O00213	710 aa		6.69	□□□□□ -1.34
PTCD3-212	ENST00000477520	SLC24A1	O60721	1099 aa		6.69	□□□□□ -1.34
PTCD3-212	ENST00000477520	H2AFB1	P0C5Y9	115 aa		6.69	□□□□□ -1.34
PTCD3-212	ENST00000477520	H2AFB2	P0C5Z0	115 aa		6.69	□□□□□ -1.34
PTCD3-212	ENST00000477520	MBTPS1	Q14703	1052 aa		6.69	□□□□□ -1.34
PTCD3-212	ENST00000477520	C20orf204	Q6ZNR8	217 aa		6.69	□□□□□ -1.34
PTCD3-212	ENST00000477520	SUPT16H	Q9Y5B9	1047 aa	Known RBP	6.69	□□□□□ -1.34
PTCD3-212	ENST00000477520	ADH7	P40394	386 aa		6.68	□□□□□ -1.34
PTCD3-212	ENST00000477520	VAC14	Q08AM6	782 aa		6.68	□□□□□ -1.34
PTCD3-212	ENST00000477520	ADGRE1	Q14246	886 aa		6.68	□□□□□ -1.34
PTCD3-212	ENST00000477520	RAB44	Q7Z6P3	723 aa	Predicted RBP	6.68	□□□□□ -1.34
PTCD3-212	ENST00000477520	PCDHGA11	Q9Y5H2	935 aa		6.68	□□□□□ -1.34
PTCD3-212	ENST00000477520	DNMBP	Q6XZF7	1577 aa		6.68	□□□□□ -1.34
PTCD3-212	ENST00000477520	WDR62	O43379	1518 aa		6.67	□□□□□ -1.34
PTCD3-212	ENST00000477520	URB2	Q14146	1524 aa	Known RBP	6.67	□□□□□ -1.34
PTCD3-212	ENST00000477520	TOPBP1	Q92547	1522 aa		6.67	□□□□□ -1.34
PTCD3-212	ENST00000477520	THOC2	Q8NI27	1593 aa	Known RBP	6.67	□□□□□ -1.34
PTCD3-212	ENST00000477520	EML1	O00423	815 aa		6.67	□□□□□ -1.34
PTCD3-212	ENST00000477520	MAP7D1	Q3KQU3	841 aa		6.67	□□□□□ -1.34
PTCD3-212	ENST00000477520	UBE2Q2	Q8WVN8	375 aa		6.67	□□□□□ -1.34
PTCD3-212	ENST00000477520	L3MBTL2	Q969R5	705 aa		6.67	□□□□□ -1.34
PTCD3-212	ENST00000477520	CUX2	O14529	1486 aa		6.66	□□□□□ -1.34
PTCD3-212	ENST00000477520	KRTAP4-8	A0A0G2JLE6	195 aa		6.66	□□□□□ -1.34
PTCD3-212	ENST00000477520	BTBD11	A6QL63	1104 aa		6.66	□□□□□ -1.34
PTCD3-212	ENST00000477520	C9orf172	C9J069	976 aa		6.66	□□□□□ -1.34
PTCD3-212	ENST00000477520	NEUROD2	Q15784	382 aa		6.66	□□□□□ -1.34
PTCD3-212	ENST00000477520	TRAPPC3L	Q5T215	181 aa		6.66	□□□□□ -1.34
PTCD3-212	ENST00000477520	SHISA2	Q6UWI4	295 aa		6.66	□□□□□ -1.34
PTCD3-212	ENST00000477520	SCHIP1	Q9P0W5	487 aa	Predicted RBP	6.66	□□□□□ -1.34

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