RNA–Protein interactions for RNA: ENST00000474391.1

COL4A1-203, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 2

Gene COL4A1, Length 581 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-203ENST00000474391 ANP32CO43423 234 aa13.77□□□□□ -0.21
COL4A1-203ENST00000474391 ZNF853P0CG23 659 aa13.77□□□□□ -0.21
COL4A1-203ENST00000474391 PDE6BP35913 854 aa13.77□□□□□ -0.21
COL4A1-203ENST00000474391 HLFQ16534 295 aa13.77□□□□□ -0.21
COL4A1-203ENST00000474391 MAP3K15Q6ZN16 1313 aa13.77□□□□□ -0.21
COL4A1-203ENST00000474391 C2CD5Q86YS7 1000 aa13.77□□□□□ -0.21
COL4A1-203ENST00000474391 CNBD1Q8NA66 436 aa13.77□□□□□ -0.21
COL4A1-203ENST00000474391 H0YIN7 160 aa13.76□□□□□ -0.21
COL4A1-203ENST00000474391 MYL6BP14649 208 aa13.76□□□□□ -0.21
COL4A1-203ENST00000474391 TTLL7Q6ZT98 887 aa13.76□□□□□ -0.21
COL4A1-203ENST00000474391 NIP7Q9Y221 180 aaKnown RBP eCLIP13.76□□□□□ -0.21
COL4A1-203ENST00000474391 ATP10DQ9P241 1426 aa13.75□□□□□ -0.21
COL4A1-203ENST00000474391 HOXB7P09629 217 aa13.75□□□□□ -0.21
COL4A1-203ENST00000474391 KRT24Q2M2I5 525 aa13.75□□□□□ -0.21
COL4A1-203ENST00000474391 ARHGAP27Q6ZUM4 889 aa13.75□□□□□ -0.21
COL4A1-203ENST00000474391 NBPF5PQ86XG9 351 aaPredicted RBP13.75□□□□□ -0.21
COL4A1-203ENST00000474391 NGEFQ8N5V2 710 aa13.75□□□□□ -0.21
COL4A1-203ENST00000474391 LAS1LQ9Y4W2 734 aaKnown RBP13.75□□□□□ -0.21
COL4A1-203ENST00000474391 KLRG2A4D1S0 409 aaPredicted RBP13.74□□□□□ -0.21
COL4A1-203ENST00000474391 EIF2S2P20042 333 aaKnown RBP13.74□□□□□ -0.21
COL4A1-203ENST00000474391 ST5P78524 1137 aa13.74□□□□□ -0.21
COL4A1-203ENST00000474391 CALD1Q05682 793 aaKnown RBP13.74□□□□□ -0.21
COL4A1-203ENST00000474391 PROSER3Q2NL68 480 aa13.74□□□□□ -0.21
COL4A1-203ENST00000474391 TPTE2Q6XPS3 522 aa13.74□□□□□ -0.21
COL4A1-203ENST00000474391 KIF6Q6ZMV9 814 aa13.74□□□□□ -0.21
COL4A1-203ENST00000474391 CCDC24Q8N4L8 307 aa13.74□□□□□ -0.21
COL4A1-203ENST00000474391 TTLL6Q8N841 843 aa13.74□□□□□ -0.21
COL4A1-203ENST00000474391 MRS2Q9HD23 443 aa13.74□□□□□ -0.21
COL4A1-203ENST00000474391 MBIPQ9NS73 344 aa13.74□□□□□ -0.21
COL4A1-203ENST00000474391 IFT57Q9NWB7 429 aa13.74□□□□□ -0.21
COL4A1-203ENST00000474391 COL11A2P13942 1736 aaPredicted RBP13.73□□□□□ -0.21
COL4A1-203ENST00000474391 SRGNP10124 158 aa13.73□□□□□ -0.21
COL4A1-203ENST00000474391 CCDC27Q2M243 656 aa13.73□□□□□ -0.21
COL4A1-203ENST00000474391 NCBP3Q53F19 620 aaKnown RBP13.73□□□□□ -0.21
COL4A1-203ENST00000474391 GIGYF2Q6Y7W6 1299 aaKnown RBP13.73□□□□□ -0.21
COL4A1-203ENST00000474391 DDX21Q9NR30 783 aaKnown RBP eCLIP13.73□□□□□ -0.21
COL4A1-203ENST00000474391 IBTKQ9P2D0 1353 aaPredicted RBP13.72□□□□□ -0.21
COL4A1-203ENST00000474391 GNAI1P63096 354 aa13.72□□□□□ -0.21
COL4A1-203ENST00000474391 STYK1Q6J9G0 422 aa13.72□□□□□ -0.21
COL4A1-203ENST00000474391 ZNF34Q8IZ26 560 aa13.72□□□□□ -0.21
COL4A1-203ENST00000474391 ZBTB3Q9H5J0 574 aa13.72□□□□□ -0.21
COL4A1-203ENST00000474391 NUP98P52948 1817 aa13.71□□□□□ -0.21
COL4A1-203ENST00000474391 UBN2Q6ZU65 1347 aa13.71□□□□□ -0.21
COL4A1-203ENST00000474391 NPHP1O15259 732 aa13.71□□□□□ -0.21
COL4A1-203ENST00000474391 ANXA1P04083 346 aa13.71□□□□□ -0.21
COL4A1-203ENST00000474391 NYXQ9GZU5 481 aa13.71□□□□□ -0.21
COL4A1-203ENST00000474391 HDGFL1Q5TGJ6 251 aa13.7□□□□□ -0.22
COL4A1-203ENST00000474391 DUSP27Q5VZP5 1158 aa13.7□□□□□ -0.22
COL4A1-203ENST00000474391 COPS6Q7L5N1 327 aa13.7□□□□□ -0.22
COL4A1-203ENST00000474391 NECTIN2Q92692 538 aa13.7□□□□□ -0.22
COL4A1-203ENST00000474391 CNKSR1Q969H4 720 aa13.7□□□□□ -0.22
COL4A1-203ENST00000474391 ZNF622Q969S3 477 aaKnown RBP eCLIP13.7□□□□□ -0.22
COL4A1-203ENST00000474391 MASTLQ96GX5 879 aa13.7□□□□□ -0.22
COL4A1-203ENST00000474391 CHPF2Q9P2E5 772 aa13.7□□□□□ -0.22
COL4A1-203ENST00000474391 RIC1Q4ADV7 1423 aa13.7□□□□□ -0.22
COL4A1-203ENST00000474391 GPTP24298 496 aa13.69□□□□□ -0.22
COL4A1-203ENST00000474391 C9orf131Q5VYM1 1079 aa13.69□□□□□ -0.22
COL4A1-203ENST00000474391 XAGE3Q8WTP9 111 aa13.69□□□□□ -0.22
COL4A1-203ENST00000474391 GPBP1L1Q9HC44 474 aaPredicted RBP13.69□□□□□ -0.22
COL4A1-203ENST00000474391 DBF4Q9UBU7 674 aaPredicted RBP13.69□□□□□ -0.22
COL4A1-203ENST00000474391 FAM177BA6PVY3 158 aa13.68□□□□□ -0.22
COL4A1-203ENST00000474391 NFKBIEO00221 500 aa13.68□□□□□ -0.22
COL4A1-203ENST00000474391 NTSR2O95665 410 aa13.68□□□□□ -0.22
COL4A1-203ENST00000474391 NPR1P16066 1061 aa13.68□□□□□ -0.22
COL4A1-203ENST00000474391 CRY2Q49AN0 593 aa13.68□□□□□ -0.22
COL4A1-203ENST00000474391 PARP10Q53GL7 1025 aa13.68□□□□□ -0.22
COL4A1-203ENST00000474391 SUSD4Q5VX71 490 aa13.68□□□□□ -0.22
COL4A1-203ENST00000474391 PRPF40BQ6NWY9 871 aaKnown RBP13.68□□□□□ -0.22
COL4A1-203ENST00000474391 WWC1Q8IX03 1113 aa13.68□□□□□ -0.22
COL4A1-203ENST00000474391 ABCC12Q96J65 1359 aa13.68□□□□□ -0.22
COL4A1-203ENST00000474391 ARFGEF2Q9Y6D5 1785 aa13.68□□□□□ -0.22
COL4A1-203ENST00000474391 TNRC6CQ9HCJ0 1690 aaKnown RBP13.67□□□□□ -0.22
COL4A1-203ENST00000474391 GTF2E1P29083 439 aaPredicted RBP13.67□□□□□ -0.22
COL4A1-203ENST00000474391 PRELPP51888 382 aa13.67□□□□□ -0.22
COL4A1-203ENST00000474391 C1QTNF8P60827 252 aa13.67□□□□□ -0.22
COL4A1-203ENST00000474391 RASSF7Q02833 373 aa13.67□□□□□ -0.22
COL4A1-203ENST00000474391 ERFEQ4G0M1 354 aa13.67□□□□□ -0.22
COL4A1-203ENST00000474391 HSP90AB3PQ58FF7 597 aa13.67□□□□□ -0.22
COL4A1-203ENST00000474391 NUTM1Q86Y26 1132 aa13.67□□□□□ -0.22
COL4A1-203ENST00000474391 C7orf43Q8WVR3 580 aa13.67□□□□□ -0.22
COL4A1-203ENST00000474391 HYPKQ9NX55 129 aa13.67□□□□□ -0.22
COL4A1-203ENST00000474391 SBF1O95248 1867 aa13.67□□□□□ -0.22
COL4A1-203ENST00000474391 IL16Q14005 1332 aa13.66□□□□□ -0.22
COL4A1-203ENST00000474391 LTBP3Q9NS15 1303 aa13.66□□□□□ -0.22
COL4A1-203ENST00000474391 ZC3H4Q9UPT8 1303 aaKnown RBP13.66□□□□□ -0.22
COL4A1-203ENST00000474391 C21orf2O43822 256 aa13.66□□□□□ -0.22
COL4A1-203ENST00000474391 LMNB1P20700 586 aa13.66□□□□□ -0.22
COL4A1-203ENST00000474391 AIMP1Q12904 312 aaKnown RBP13.66□□□□□ -0.22
COL4A1-203ENST00000474391 PPP1R42Q7Z4L9 355 aa13.66□□□□□ -0.22
COL4A1-203ENST00000474391 C8orf58Q8NAV2 365 aa13.66□□□□□ -0.22
COL4A1-203ENST00000474391 RNF181Q9P0P0 153 aa13.66□□□□□ -0.22
COL4A1-203ENST00000474391 RNF123Q5XPI4 1314 aa13.65□□□□□ -0.22
COL4A1-203ENST00000474391 SLX4Q8IY92 1834 aa13.65□□□□□ -0.22
COL4A1-203ENST00000474391 TCIRG1Q13488 830 aa13.65□□□□□ -0.22
COL4A1-203ENST00000474391 SLC10A5Q5PT55 438 aa13.65□□□□□ -0.22
COL4A1-203ENST00000474391 SOGA3Q5TF21 947 aa13.65□□□□□ -0.22
COL4A1-203ENST00000474391 NLRP10Q86W26 655 aa13.65□□□□□ -0.22
COL4A1-203ENST00000474391 PLBD2Q8NHP8 589 aa13.65□□□□□ -0.22
COL4A1-203ENST00000474391 ZNF526Q8TF50 670 aaPredicted RBP13.65□□□□□ -0.22
COL4A1-203ENST00000474391 ANKRD36CQ5JPF3 1778 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms