RNA–Protein interactions for RNA: ENST00000471752.1

USP48-207, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 445 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-207ENST00000471752 BRCA1P38398 1863 aaKnown RBP10.75□□□□□ -0.69
USP48-207ENST00000471752 H0YIN7 160 aa10.75□□□□□ -0.69
USP48-207ENST00000471752 HSPA6P17066 643 aa10.75□□□□□ -0.69
USP48-207ENST00000471752 EIF4A1P60842 406 aaKnown RBP10.75□□□□□ -0.69
USP48-207ENST00000471752 NFE2L2Q16236 605 aa10.75□□□□□ -0.69
USP48-207ENST00000471752 BRIP1Q9BX63 1249 aa10.75□□□□□ -0.69
USP48-207ENST00000471752 POTECB2RU33 542 aa10.74□□□□□ -0.69
USP48-207ENST00000471752 HTATSF1O43719 755 aaKnown RBP10.74□□□□□ -0.69
USP48-207ENST00000471752 ANXA1P04083 346 aa10.74□□□□□ -0.69
USP48-207ENST00000471752 CCDC146Q8IYE0 955 aa10.74□□□□□ -0.69
USP48-207ENST00000471752 ZNF428Q96B54 188 aa10.74□□□□□ -0.69
USP48-207ENST00000471752 SETDB2Q96T68 719 aa10.74□□□□□ -0.69
USP48-207ENST00000471752 NRXN2Q9P2S2 1712 aa10.73□□□□□ -0.69
USP48-207ENST00000471752 KRT24Q2M2I5 525 aa10.73□□□□□ -0.69
USP48-207ENST00000471752 PROSER3Q2NL68 480 aa10.73□□□□□ -0.69
USP48-207ENST00000471752 DNAJC5GQ8N7S2 189 aa10.73□□□□□ -0.69
USP48-207ENST00000471752 SRGNP10124 158 aa10.72□□□□□ -0.69
USP48-207ENST00000471752 MYL6BP14649 208 aa10.72□□□□□ -0.69
USP48-207ENST00000471752 PDIA6Q15084 440 aa10.72□□□□□ -0.69
USP48-207ENST00000471752 C3orf67Q6ZVT6 689 aa10.72□□□□□ -0.69
USP48-207ENST00000471752 CNBD1Q8NA66 436 aa10.72□□□□□ -0.69
USP48-207ENST00000471752 C7orf43Q8WVR3 580 aa10.72□□□□□ -0.69
USP48-207ENST00000471752 NIP7Q9Y221 180 aaKnown RBP eCLIP10.72□□□□□ -0.69
USP48-207ENST00000471752 TOMM70O94826 608 aa10.71□□□□□ -0.69
USP48-207ENST00000471752 LMNB1P20700 586 aa10.71□□□□□ -0.69
USP48-207ENST00000471752 RIPK4P57078 832 aa10.71□□□□□ -0.69
USP48-207ENST00000471752 NEUROD2Q15784 382 aa10.71□□□□□ -0.69
USP48-207ENST00000471752 LRP10Q7Z4F1 713 aa10.71□□□□□ -0.69
USP48-207ENST00000471752 NBPF5PQ86XG9 351 aaPredicted RBP10.71□□□□□ -0.69
USP48-207ENST00000471752 NUTM1Q86Y26 1132 aa10.71□□□□□ -0.69
USP48-207ENST00000471752 ANKRD31Q8N7Z5 1873 aa10.71□□□□□ -0.69
USP48-207ENST00000471752 NECTIN2Q92692 538 aa10.71□□□□□ -0.69
USP48-207ENST00000471752 POTEIP0CG38 1075 aa10.7□□□□□ -0.7
USP48-207ENST00000471752 POTEJP0CG39 1038 aa10.7□□□□□ -0.7
USP48-207ENST00000471752 GPTP24298 496 aa10.7□□□□□ -0.7
USP48-207ENST00000471752 PDE6BP35913 854 aa10.7□□□□□ -0.7
USP48-207ENST00000471752 ERFEQ4G0M1 354 aa10.7□□□□□ -0.7
USP48-207ENST00000471752 PRPF40BQ6NWY9 871 aaKnown RBP10.7□□□□□ -0.7
USP48-207ENST00000471752 SYNE4Q8N205 404 aa10.7□□□□□ -0.7
USP48-207ENST00000471752 ZBTB3Q9H5J0 574 aa10.7□□□□□ -0.7
USP48-207ENST00000471752 TRIM35Q9UPQ4 493 aa10.7□□□□□ -0.7
USP48-207ENST00000471752 ARFGEF1Q9Y6D6 1849 aa10.7□□□□□ -0.7
USP48-207ENST00000471752 UBN2Q6ZU65 1347 aa10.69□□□□□ -0.7
USP48-207ENST00000471752 KLRG2A4D1S0 409 aaPredicted RBP10.69□□□□□ -0.7
USP48-207ENST00000471752 EIF2S2P20042 333 aaKnown RBP10.69□□□□□ -0.7
USP48-207ENST00000471752 TMPOP42166 694 aaKnown RBP10.69□□□□□ -0.7
USP48-207ENST00000471752 CLEC4GQ6UXB4 293 aa10.69□□□□□ -0.7
USP48-207ENST00000471752 ADAMTS8Q9UP79 889 aa10.69□□□□□ -0.7
USP48-207ENST00000471752 SBF1O95248 1867 aa10.68□□□□□ -0.7
USP48-207ENST00000471752 ABCC12Q96J65 1359 aa10.68□□□□□ -0.7
USP48-207ENST00000471752 SLX4Q8IY92 1834 aa10.68□□□□□ -0.7
USP48-207ENST00000471752 COL11A2P13942 1736 aaPredicted RBP10.68□□□□□ -0.7
USP48-207ENST00000471752 GLTPD2A6NH11 291 aa10.68□□□□□ -0.7
USP48-207ENST00000471752 RALBP1Q15311 655 aa10.68□□□□□ -0.7
USP48-207ENST00000471752 CCDC184Q52MB2 194 aa10.68□□□□□ -0.7
USP48-207ENST00000471752 SUSD4Q5VX71 490 aa10.68□□□□□ -0.7
USP48-207ENST00000471752 NPM2Q86SE8 214 aaKnown RBP10.68□□□□□ -0.7
USP48-207ENST00000471752 MASTLQ96GX5 879 aa10.68□□□□□ -0.7
USP48-207ENST00000471752 SCN7AQ01118 1682 aa10.67□□□□□ -0.7
USP48-207ENST00000471752 TCERG1O14776 1098 aaKnown RBP10.67□□□□□ -0.7
USP48-207ENST00000471752 NPHP1O15259 732 aa10.67□□□□□ -0.7
USP48-207ENST00000471752 DDNO94850 711 aaPredicted RBP10.67□□□□□ -0.7
USP48-207ENST00000471752 ST5P78524 1137 aa10.67□□□□□ -0.7
USP48-207ENST00000471752 STYK1Q6J9G0 422 aa10.67□□□□□ -0.7
USP48-207ENST00000471752 ZNF34Q8IZ26 560 aa10.67□□□□□ -0.7
USP48-207ENST00000471752 RBM46Q8TBY0 533 aaKnown RBP10.67□□□□□ -0.7
USP48-207ENST00000471752 ZNF277Q9NRM2 450 aaPredicted RBP10.67□□□□□ -0.7
USP48-207ENST00000471752 TSPYL4Q9UJ04 414 aa10.67□□□□□ -0.7
USP48-207ENST00000471752 MAP3K15Q6ZN16 1313 aa10.66□□□□□ -0.7
USP48-207ENST00000471752 MAPK8IP3Q9UPT6 1336 aa10.66□□□□□ -0.7
USP48-207ENST00000471752 TPTE2Q6XPS3 522 aa10.66□□□□□ -0.7
USP48-207ENST00000471752 CNKSR1Q969H4 720 aa10.66□□□□□ -0.7
USP48-207ENST00000471752 DLG5Q8TDM6 1919 aa10.66□□□□□ -0.7
USP48-207ENST00000471752 KDM2BQ8NHM5 1336 aa10.65□□□□□ -0.7
USP48-207ENST00000471752 NPR1P16066 1061 aa10.65□□□□□ -0.7
USP48-207ENST00000471752 AIMP1Q12904 312 aaKnown RBP10.65□□□□□ -0.7
USP48-207ENST00000471752 PNISRQ8TF01 805 aaKnown RBP10.65□□□□□ -0.7
USP48-207ENST00000471752 LAS1LQ9Y4W2 734 aaKnown RBP10.65□□□□□ -0.7
USP48-207ENST00000471752 MYBBP1AQ9BQG0 1328 aaKnown RBP10.64□□□□□ -0.71
USP48-207ENST00000471752 ZNF541Q9H0D2 1346 aa10.64□□□□□ -0.71
USP48-207ENST00000471752 ERVV-1B6SEH8 477 aa10.64□□□□□ -0.71
USP48-207ENST00000471752 CHL1O00533 1208 aa10.64□□□□□ -0.71
USP48-207ENST00000471752 ABCB7O75027 752 aa10.64□□□□□ -0.71
USP48-207ENST00000471752 NTSR2O95665 410 aa10.64□□□□□ -0.71
USP48-207ENST00000471752 VEGFAP15692 232 aaPredicted RBP10.64□□□□□ -0.71
USP48-207ENST00000471752 APLP1P51693 650 aa10.64□□□□□ -0.71
USP48-207ENST00000471752 COPS6Q7L5N1 327 aa10.64□□□□□ -0.71
USP48-207ENST00000471752 C16orf71Q8IYS4 520 aaPredicted RBP10.64□□□□□ -0.71
USP48-207ENST00000471752 XAGE3Q8WTP9 111 aa10.64□□□□□ -0.71
USP48-207ENST00000471752 TAOK3Q9H2K8 898 aa10.64□□□□□ -0.71
USP48-207ENST00000471752 PRKRIP1Q9H875 184 aaPredicted RBP10.64□□□□□ -0.71
USP48-207ENST00000471752 ZNF652Q9Y2D9 606 aa10.64□□□□□ -0.71
USP48-207ENST00000471752 BCORQ6W2J9 1755 aa10.63□□□□□ -0.71
USP48-207ENST00000471752 DLEC1Q9Y238 1755 aa10.63□□□□□ -0.71
USP48-207ENST00000471752 MYCNP04198 464 aaPredicted RBP10.63□□□□□ -0.71
USP48-207ENST00000471752 NEFMP07197 916 aa10.63□□□□□ -0.71
USP48-207ENST00000471752 GTF2E1P29083 439 aaPredicted RBP10.63□□□□□ -0.71
USP48-207ENST00000471752 CRY2Q49AN0 593 aa10.63□□□□□ -0.71
USP48-207ENST00000471752 GIGYF2Q6Y7W6 1299 aaKnown RBP10.63□□□□□ -0.71
USP48-207ENST00000471752 KDM3BQ7LBC6 1761 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms