RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 CCDC40Q4G0X9 1142 aa15.25■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 RAPGEF3O95398 923 aa15.25■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 SFPQP23246 707 aaKnown RBP eCLIP15.25■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 SNRKQ9NRH2 765 aa15.25■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 GOLGA8BA8MQT2 603 aa15.25■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 TRERF1Q96PN7 1200 aa15.25■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 UTP14AQ9BVJ6 771 aaKnown RBP15.25■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 FAM107BQ9H098 131 aa15.25■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 FGFR1OPO95684 399 aaKnown RBP15.25■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 PPP6R1Q9UPN7 881 aa15.25■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 CABP5Q9NP86 173 aa15.25■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 PAFAH1B1P43034 410 aa15.25■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 CCDC174Q6PII3 467 aa15.24■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 IKBKGQ9Y6K9 419 aa15.24■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 ACTN2P35609 894 aa15.24■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 DUSP27Q5VZP5 1158 aa15.24■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 CCDC89Q8N998 374 aa15.24■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 CCDC7Q96M83 1385 aa15.24■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 CALML4Q96GE6 196 aa15.24■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 PHACTR2O75167 634 aa15.24■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 TAF12Q16514 161 aa15.24■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 SHTN1A0MZ66 631 aa15.23■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 SLF2Q8IX21 1173 aa15.23■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 FERMT1Q9BQL6 677 aa15.23■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 F6X3S4 739 aa15.23■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 GJC1P36383 396 aa15.23■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 DDX46Q7L014 1031 aaKnown RBP15.23■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 MICU3Q86XE3 530 aa15.23■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 GRPEL1Q9HAV7 217 aa15.23■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 ATP5J2-PTCD1G3V325 749 aa15.23■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 PTPN14Q15678 1187 aa15.23■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 IQSEC3Q9UPP2 1182 aaPredicted RBP15.23■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 CFAP65Q6ZU64 1925 aaKnown RBP15.23■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 PSMC4P43686 418 aa15.23■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 TAOK3Q9H2K8 898 aa15.23■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 TCP11L1Q9NUJ3 509 aa15.23■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 MROH2BQ7Z745 1585 aa15.23■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 WAPLQ7Z5K2 1190 aa15.22■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 CFAP58Q5T655 872 aa15.22■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 KIF1BPQ96EK5 621 aa15.22■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 ACSBG1Q96GR2 724 aa15.22■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 USO1O60763 962 aaKnown RBP15.22■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 HSP90AA4PQ58FG1 418 aa15.22■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 TCHPQ9BT92 498 aa15.22■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 ZSWIM4Q9H7M6 989 aa15.22■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 TAF7Q15545 349 aaPredicted RBP15.22■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 LRRC45Q96CN5 670 aa15.22■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 FYCO1Q9BQS8 1478 aa15.22■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 A0A087WZG4 1122 aa15.22■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 EXOC5O00471 708 aa15.22■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 SP4Q02446 784 aa15.22■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 PICALMQ13492 652 aa15.21■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 AAMPQ13685 434 aa15.21■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 GOLGA8AA7E2F4 631 aa15.21■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 CEP135Q66GS9 1140 aa15.21■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 DAAM2Q86T65 1068 aa15.21■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 TMEM57Q8N5G2 664 aa15.21■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 A0A1W2PRG0 241 aa15.21■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 STX6O43752 255 aa15.21■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 PROCA1Q8NCQ7 364 aaPredicted RBP15.21■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 NOC2LQ9Y3T9 749 aaKnown RBP15.21■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 HLA-DOAP06340 250 aa15.21■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 MVPQ14764 893 aaKnown RBP15.21■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 JADE2Q9NQC1 790 aa15.21■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 GOLIM4O00461 696 aa15.21■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 TFIP11Q9UBB9 837 aaKnown RBP15.21■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 RAB11FIP3O75154 756 aa15.21■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 ATP2C2O75185 946 aa15.21■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 MAP9Q49MG5 647 aa15.21■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 KAT14Q9H8E8 782 aa15.21■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 PRDM10Q9NQV6 1147 aa15.21■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 TMEM67Q5HYA8 995 aa15.2■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 ZSCAN31Q96LW9 406 aaPredicted RBP15.2■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 MYOM3Q5VTT5 1437 aa15.2■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 VEZTQ9HBM0 779 aa15.2■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 RNF216Q9NWF9 866 aaPredicted RBP15.2■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 ATXN8OSP0DMR3 200 aa15.2■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 LDHAL6AQ6ZMR3 332 aa15.2■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 MAATS1Q7Z4T9 603 aa15.2■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 NDC80O14777 642 aa15.2■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 UBA7P41226 1012 aa15.2■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 IPO4Q8TEX9 1081 aaKnown RBP15.2■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 SIRT1Q96EB6 747 aa15.2■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 MPHOSPH6Q99547 160 aaKnown RBP15.2■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 ZBTB21Q9ULJ3 1066 aa15.2■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 AKNAQ7Z591 1439 aa15.19■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 TMEM110-MUSTN1A8MSY1 372 aa15.19■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 BAG3O95817 575 aa15.19■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 ARID5AQ03989 594 aa15.19■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 OGFOD1Q8N543 542 aa15.19■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 CCDC63Q8NA47 563 aa15.19■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 GDPD2Q9HCC8 539 aa15.19■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 CIZ1Q9ULV3 898 aaPredicted RBP15.19■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 MXRA7P84157 204 aa15.18■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 GLRX3O76003 335 aaKnown RBP15.18■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 TTC21AQ8NDW8 1320 aa15.18■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 NUDT16Q96DE0 195 aaKnown RBP15.18■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 ANKRD50Q9ULJ7 1429 aa15.18■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 ST5P78524 1137 aa15.17■□□□□ 0.02
NPHP3-ACAD11-201ENST00000471702 SLC26A6Q9BXS9 759 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms