RNA–Protein interactions for RNA: ENST00000469585.5

PTCD3-208, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-208ENST00000469585 KCNA1Q09470 495 aa9.78□□□□□ -0.84
PTCD3-208ENST00000469585 TEAD4Q15561 434 aa9.78□□□□□ -0.84
PTCD3-208ENST00000469585 RHBDD1Q8TEB9 315 aa9.78□□□□□ -0.84
PTCD3-208ENST00000469585 ZDHHC1Q8WTX9 485 aa9.78□□□□□ -0.84
PTCD3-208ENST00000469585 C2orf49Q9BVC5 232 aaPredicted RBP9.78□□□□□ -0.84
PTCD3-208ENST00000469585 TMEM214Q6NUQ4 689 aaKnown RBP9.77□□□□□ -0.85
PTCD3-208ENST00000469585 TXNDC2Q86VQ3 553 aa9.77□□□□□ -0.85
PTCD3-208ENST00000469585 ABCC2Q92887 1545 aa9.77□□□□□ -0.85
PTCD3-208ENST00000469585 FMN1Q68DA7 1419 aa9.76□□□□□ -0.85
PTCD3-208ENST00000469585 LCE2BO14633 110 aa9.76□□□□□ -0.85
PTCD3-208ENST00000469585 TRIM26Q12899 539 aaPredicted RBP9.76□□□□□ -0.85
PTCD3-208ENST00000469585 NIFKQ9BYG3 293 aaKnown RBP9.76□□□□□ -0.85
PTCD3-208ENST00000469585 GNEQ9Y223 722 aaKnown RBP9.76□□□□□ -0.85
PTCD3-208ENST00000469585 UHRF1BP1LA0JNW5 1464 aa9.76□□□□□ -0.85
PTCD3-208ENST00000469585 PLB1Q6P1J6 1458 aa9.75□□□□□ -0.85
PTCD3-208ENST00000469585 EML1O00423 815 aa9.75□□□□□ -0.85
PTCD3-208ENST00000469585 ARID4AP29374 1257 aaPredicted RBP9.75□□□□□ -0.85
PTCD3-208ENST00000469585 NOS2P35228 1153 aa9.75□□□□□ -0.85
PTCD3-208ENST00000469585 HIRAP54198 1017 aaPredicted RBP9.75□□□□□ -0.85
PTCD3-208ENST00000469585 C4orf17Q53FE4 359 aa9.75□□□□□ -0.85
PTCD3-208ENST00000469585 GNASQ5JWF2 1037 aa9.75□□□□□ -0.85
PTCD3-208ENST00000469585 SH3PXD2AQ5TCZ1 1133 aa9.75□□□□□ -0.85
PTCD3-208ENST00000469585 CAPN12Q6ZSI9 719 aa9.75□□□□□ -0.85
PTCD3-208ENST00000469585 LYSMD3Q7Z3D4 306 aa9.75□□□□□ -0.85
PTCD3-208ENST00000469585 COL26A1Q96A83 441 aa9.75□□□□□ -0.85
PTCD3-208ENST00000469585 CABP1Q9NZU7 370 aa9.75□□□□□ -0.85
PTCD3-208ENST00000469585 DNMT3LQ9UJW3 386 aa9.75□□□□□ -0.85
PTCD3-208ENST00000469585 CDK11AQ9UQ88 783 aaPredicted RBP9.75□□□□□ -0.85
PTCD3-208ENST00000469585 ADCY10Q96PN6 1610 aa9.74□□□□□ -0.85
PTCD3-208ENST00000469585 SERTM1A2A2V5 107 aa9.74□□□□□ -0.85
PTCD3-208ENST00000469585 PATL2C9JE40 543 aaKnown RBP9.74□□□□□ -0.85
PTCD3-208ENST00000469585 GTF2E1P29083 439 aaPredicted RBP9.74□□□□□ -0.85
PTCD3-208ENST00000469585 POU4F2Q12837 409 aa9.74□□□□□ -0.85
PTCD3-208ENST00000469585 PRICKLE2Q7Z3G6 844 aa9.74□□□□□ -0.85
PTCD3-208ENST00000469585 L3MBTL2Q969R5 705 aa9.74□□□□□ -0.85
PTCD3-208ENST00000469585 MKNK1Q9BUB5 465 aa9.74□□□□□ -0.85
PTCD3-208ENST00000469585 SAMD9Q5K651 1589 aa9.74□□□□□ -0.85
PTCD3-208ENST00000469585 MAPKBP1O60336 1514 aa9.73□□□□□ -0.85
PTCD3-208ENST00000469585 FIGNL2A6NMB9 653 aa9.73□□□□□ -0.85
PTCD3-208ENST00000469585 WDR44Q5JSH3 913 aa9.73□□□□□ -0.85
PTCD3-208ENST00000469585 NBPF10Q6P3W6 841 aaKnown RBP9.73□□□□□ -0.85
PTCD3-208ENST00000469585 CHMP3Q9Y3E7 222 aa9.73□□□□□ -0.85
PTCD3-208ENST00000469585 PARP3Q9Y6F1 533 aa9.73□□□□□ -0.85
PTCD3-208ENST00000469585 FHOD3Q2V2M9 1422 aa9.73□□□□□ -0.85
PTCD3-208ENST00000469585 PTCD1O75127 700 aaKnown RBP9.72□□□□□ -0.85
PTCD3-208ENST00000469585 Q6ZNB5 142 aa9.72□□□□□ -0.85
PTCD3-208ENST00000469585 SEPT3Q9UH03 358 aa9.72□□□□□ -0.85
PTCD3-208ENST00000469585 IVNS1ABPQ9Y6Y0 642 aa9.72□□□□□ -0.85
PTCD3-208ENST00000469585 CLIP1P30622 1438 aa9.71□□□□□ -0.86
PTCD3-208ENST00000469585 RAPGEF6Q8TEU7 1601 aa9.71□□□□□ -0.86
PTCD3-208ENST00000469585 PLEKHD1A6NEE1 506 aa9.7□□□□□ -0.86
PTCD3-208ENST00000469585 RHOQP17081 205 aa9.7□□□□□ -0.86
PTCD3-208ENST00000469585 PHKA2P46019 1235 aa9.7□□□□□ -0.86
PTCD3-208ENST00000469585 PLA2G4AP47712 749 aa9.7□□□□□ -0.86
PTCD3-208ENST00000469585 CCER1Q8TC90 406 aaPredicted RBP9.7□□□□□ -0.86
PTCD3-208ENST00000469585 SENP2Q9HC62 589 aa9.7□□□□□ -0.86
PTCD3-208ENST00000469585 ZNF232Q9UNY5 417 aa9.7□□□□□ -0.86
PTCD3-208ENST00000469585 ASXL2Q76L83 1435 aa9.7□□□□□ -0.86
PTCD3-208ENST00000469585 ZBTB7CA1YPR0 619 aa9.69□□□□□ -0.86
PTCD3-208ENST00000469585 TXLNAP40222 546 aa9.69□□□□□ -0.86
PTCD3-208ENST00000469585 SERPINB4P48594 390 aa9.69□□□□□ -0.86
PTCD3-208ENST00000469585 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.69□□□□□ -0.86
PTCD3-208ENST00000469585 KIFC2Q96AC6 838 aa9.69□□□□□ -0.86
PTCD3-208ENST00000469585 VTI1AQ96AJ9 217 aa9.69□□□□□ -0.86
PTCD3-208ENST00000469585 TRIM47Q96LD4 638 aa9.69□□□□□ -0.86
PTCD3-208ENST00000469585 QTRT2Q9H974 415 aaKnown RBP9.69□□□□□ -0.86
PTCD3-208ENST00000469585 GMPR2Q9P2T1 348 aaKnown RBP9.69□□□□□ -0.86
PTCD3-208ENST00000469585 KDM5BQ9UGL1 1544 aa9.69□□□□□ -0.86
PTCD3-208ENST00000469585 HCN4Q9Y3Q4 1203 aa9.69□□□□□ -0.86
PTCD3-208ENST00000469585 ZCCHC11Q5TAX3 1644 aaKnown RBP9.68□□□□□ -0.86
PTCD3-208ENST00000469585 HECW1Q76N89 1606 aa9.68□□□□□ -0.86
PTCD3-208ENST00000469585 ABCA8O94911 1581 aa9.68□□□□□ -0.86
PTCD3-208ENST00000469585 ABCC10Q5T3U5 1492 aa9.68□□□□□ -0.86
PTCD3-208ENST00000469585 WDR7Q9Y4E6 1490 aa9.68□□□□□ -0.86
PTCD3-208ENST00000469585 SOBPA7XYQ1 873 aa9.68□□□□□ -0.86
PTCD3-208ENST00000469585 MAN1A2O60476 641 aa9.68□□□□□ -0.86
PTCD3-208ENST00000469585 NAA30Q147X3 362 aaPredicted RBP9.68□□□□□ -0.86
PTCD3-208ENST00000469585 ALDH16A1Q8IZ83 802 aa9.68□□□□□ -0.86
PTCD3-208ENST00000469585 MYO19Q96H55 970 aa9.68□□□□□ -0.86
PTCD3-208ENST00000469585 SAP130Q9H0E3 1048 aa9.68□□□□□ -0.86
PTCD3-208ENST00000469585 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.68□□□□□ -0.86
PTCD3-208ENST00000469585 ZDHHC3Q9NYG2 299 aa9.68□□□□□ -0.86
PTCD3-208ENST00000469585 MTMR7Q9Y216 660 aa9.68□□□□□ -0.86
PTCD3-208ENST00000469585 C1orf53Q5VUE5 145 aa9.67□□□□□ -0.86
PTCD3-208ENST00000469585 GTF3C2Q8WUA4 911 aaPredicted RBP9.67□□□□□ -0.86
PTCD3-208ENST00000469585 C7orf43Q8WVR3 580 aa9.67□□□□□ -0.86
PTCD3-208ENST00000469585 PHACTR1Q9C0D0 580 aa9.67□□□□□ -0.86
PTCD3-208ENST00000469585 TIMMDC1Q9NPL8 285 aa9.67□□□□□ -0.86
PTCD3-208ENST00000469585 TEX14Q8IWB6 1497 aa9.66□□□□□ -0.86
PTCD3-208ENST00000469585 SENP3-EIF4A1A0A087X0R7 540 aa9.66□□□□□ -0.86
PTCD3-208ENST00000469585 NBPF1Q3BBV0 1214 aa9.66□□□□□ -0.86
PTCD3-208ENST00000469585 COX20Q5RI15 118 aa9.66□□□□□ -0.86
PTCD3-208ENST00000469585 C16orf46Q6P387 395 aa9.66□□□□□ -0.86
PTCD3-208ENST00000469585 DNMT3AQ9Y6K1 912 aaPredicted RBP9.66□□□□□ -0.86
PTCD3-208ENST00000469585 ARHGAP35Q9NRY4 1499 aa9.66□□□□□ -0.86
PTCD3-208ENST00000469585 ATP4AP20648 1035 aa9.65□□□□□ -0.86
PTCD3-208ENST00000469585 RTN1Q16799 776 aa9.65□□□□□ -0.86
PTCD3-208ENST00000469585 AIDAQ96BJ3 306 aa9.65□□□□□ -0.86
PTCD3-208ENST00000469585 NGLY1Q96IV0 654 aa9.65□□□□□ -0.86
PTCD3-208ENST00000469585 EGFL7Q9UHF1 273 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms