RNA–Protein interactions for RNA: ENST00000468654.1

SHANK1-206, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 3

Gene SHANK1, Length 668 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-206ENST00000468654 NBPF26B4DH59 902 aa27.89■■■□□ 2.06
SHANK1-206ENST00000468654 NFKBIEO00221 500 aa27.89■■■□□ 2.06
SHANK1-206ENST00000468654 NBPF10Q6P3W6 841 aaKnown RBP27.89■■■□□ 2.06
SHANK1-206ENST00000468654 CCDC24Q8N4L8 307 aa27.89■■■□□ 2.06
SHANK1-206ENST00000468654 NBPF15Q8N660 670 aa27.89■■■□□ 2.06
SHANK1-206ENST00000468654 PDZRN3Q9UPQ7 1066 aa27.89■■■□□ 2.06
SHANK1-206ENST00000468654 PDE6BP35913 854 aa27.88■■■□□ 2.05
SHANK1-206ENST00000468654 CLEC4GQ6UXB4 293 aa27.88■■■□□ 2.05
SHANK1-206ENST00000468654 CNBD1Q8NA66 436 aa27.88■■■□□ 2.05
SHANK1-206ENST00000468654 LMNB1P20700 586 aa27.87■■■□□ 2.05
SHANK1-206ENST00000468654 THUMPD2Q9BTF0 503 aaKnown RBP27.87■■■□□ 2.05
SHANK1-206ENST00000468654 RGL2O15211 777 aa27.86■■■□□ 2.05
SHANK1-206ENST00000468654 DDX10Q13206 875 aaKnown RBP27.86■■■□□ 2.05
SHANK1-206ENST00000468654 ZNF652Q9Y2D9 606 aa27.86■■■□□ 2.05
SHANK1-206ENST00000468654 C16orf71Q8IYS4 520 aaPredicted RBP27.85■■■□□ 2.05
SHANK1-206ENST00000468654 EIF4A1P60842 406 aaKnown RBP27.84■■■□□ 2.05
SHANK1-206ENST00000468654 RRAGCQ9HB90 399 aa27.84■■■□□ 2.05
SHANK1-206ENST00000468654 MYBBP1AQ9BQG0 1328 aaKnown RBP27.84■■■□□ 2.05
SHANK1-206ENST00000468654 ST5P78524 1137 aa27.83■■■□□ 2.05
SHANK1-206ENST00000468654 NPHP1O15259 732 aa27.82■■■□□ 2.04
SHANK1-206ENST00000468654 ZNF622Q969S3 477 aaKnown RBP eCLIP27.82■■■□□ 2.04
SHANK1-206ENST00000468654 DNAJC5GQ8N7S2 189 aa27.81■■■□□ 2.04
SHANK1-206ENST00000468654 PCNTO95613 3336 aa27.8■■■□□ 2.04
SHANK1-206ENST00000468654 FSTL1Q12841 308 aa27.8■■■□□ 2.04
SHANK1-206ENST00000468654 NBPF5PQ86XG9 351 aaPredicted RBP27.8■■■□□ 2.04
SHANK1-206ENST00000468654 ANKRD36CQ5JPF3 1778 aa27.79■■■□□ 2.04
SHANK1-206ENST00000468654 GLTPD2A6NH11 291 aa27.78■■■□□ 2.04
SHANK1-206ENST00000468654 C21orf2O43822 256 aa27.78■■■□□ 2.04
SHANK1-206ENST00000468654 HTRA3P83110 453 aa27.78■■■□□ 2.04
SHANK1-206ENST00000468654 IFFO2Q5TF58 517 aa27.78■■■□□ 2.04
SHANK1-206ENST00000468654 ZNF219Q9P2Y4 722 aaPredicted RBP27.78■■■□□ 2.04
SHANK1-206ENST00000468654 SCN4AP35499 1836 aa27.78■■■□□ 2.04
SHANK1-206ENST00000468654 SRGNP10124 158 aa27.77■■■□□ 2.04
SHANK1-206ENST00000468654 STYK1Q6J9G0 422 aa27.77■■■□□ 2.04
SHANK1-206ENST00000468654 NIP7Q9Y221 180 aaKnown RBP eCLIP27.77■■■□□ 2.04
SHANK1-206ENST00000468654 RIPK4P57078 832 aa27.76■■■□□ 2.03
SHANK1-206ENST00000468654 HLFQ16534 295 aa27.76■■■□□ 2.03
SHANK1-206ENST00000468654 LTBP3Q9NS15 1303 aa27.75■■■□□ 2.03
SHANK1-206ENST00000468654 TMPOP42166 694 aaKnown RBP27.75■■■□□ 2.03
SHANK1-206ENST00000468654 PRPF40BQ6NWY9 871 aaKnown RBP27.75■■■□□ 2.03
SHANK1-206ENST00000468654 CNKSR1Q969H4 720 aa27.75■■■□□ 2.03
SHANK1-206ENST00000468654 MASTLQ96GX5 879 aa27.75■■■□□ 2.03
SHANK1-206ENST00000468654 TSPYL4Q9UJ04 414 aa27.75■■■□□ 2.03
SHANK1-206ENST00000468654 LMOD3Q0VAK6 560 aa27.74■■■□□ 2.03
SHANK1-206ENST00000468654 LAMB2P55268 1798 aa27.73■■■□□ 2.03
SHANK1-206ENST00000468654 ERVV-1B6SEH8 477 aa27.73■■■□□ 2.03
SHANK1-206ENST00000468654 TPTE2Q6XPS3 522 aa27.73■■■□□ 2.03
SHANK1-206ENST00000468654 SMC1BQ8NDV3 1235 aa27.73■■■□□ 2.03
SHANK1-206ENST00000468654 ERBB4Q15303 1308 aa27.72■■■□□ 2.03
SHANK1-206ENST00000468654 MAP3K15Q6ZN16 1313 aa27.72■■■□□ 2.03
SHANK1-206ENST00000468654 KLRG2A4D1S0 409 aaPredicted RBP27.72■■■□□ 2.03
SHANK1-206ENST00000468654 TAOK3Q9H2K8 898 aa27.72■■■□□ 2.03
SHANK1-206ENST00000468654 BABAM1Q9NWV8 329 aa27.72■■■□□ 2.03
SHANK1-206ENST00000468654 RRP7AQ9Y3A4 280 aaKnown RBP27.72■■■□□ 2.03
SHANK1-206ENST00000468654 TTLL7Q6ZT98 887 aa27.71■■■□□ 2.03
SHANK1-206ENST00000468654 NGEFQ8N5V2 710 aa27.71■■■□□ 2.03
SHANK1-206ENST00000468654 VEGFAP15692 232 aaPredicted RBP27.7■■■□□ 2.02
SHANK1-206ENST00000468654 POTECB2RU33 542 aa27.69■■■□□ 2.02
SHANK1-206ENST00000468654 MYL6BP14649 208 aa27.69■■■□□ 2.02
SHANK1-206ENST00000468654 NPR1P16066 1061 aa27.69■■■□□ 2.02
SHANK1-206ENST00000468654 KIF6Q6ZMV9 814 aa27.69■■■□□ 2.02
SHANK1-206ENST00000468654 CCDC146Q8IYE0 955 aa27.69■■■□□ 2.02
SHANK1-206ENST00000468654 KLRG1Q96E93 195 aa27.69■■■□□ 2.02
SHANK1-206ENST00000468654 ABCC12Q96J65 1359 aa27.69■■■□□ 2.02
SHANK1-206ENST00000468654 FAM177BA6PVY3 158 aa27.68■■■□□ 2.02
SHANK1-206ENST00000468654 ERFEQ4G0M1 354 aa27.68■■■□□ 2.02
SHANK1-206ENST00000468654 SOGA3Q5TF21 947 aa27.68■■■□□ 2.02
SHANK1-206ENST00000468654 ADAMTSL1Q8N6G6 1762 aa27.68■■■□□ 2.02
SHANK1-206ENST00000468654 WDR43Q15061 677 aaKnown RBP eCLIP27.67■■■□□ 2.02
SHANK1-206ENST00000468654 IBTKQ9P2D0 1353 aaPredicted RBP27.67■■■□□ 2.02
SHANK1-206ENST00000468654 C7orf43Q8WVR3 580 aa27.66■■■□□ 2.02
SHANK1-206ENST00000468654 RUNDC1Q96C34 613 aa27.66■■■□□ 2.02
SHANK1-206ENST00000468654 LRP10Q7Z4F1 713 aa27.65■■■□□ 2.02
SHANK1-206ENST00000468654 NYXQ9GZU5 481 aa27.65■■■□□ 2.02
SHANK1-206ENST00000468654 ZBTB3Q9H5J0 574 aa27.65■■■□□ 2.02
SHANK1-206ENST00000468654 PRKRIP1Q9H875 184 aaPredicted RBP27.65■■■□□ 2.02
SHANK1-206ENST00000468654 RIC1Q4ADV7 1423 aa27.65■■■□□ 2.02
SHANK1-206ENST00000468654 SNED1Q8TER0 1413 aa27.65■■■□□ 2.02
SHANK1-206ENST00000468654 UBN2Q6ZU65 1347 aa27.65■■■□□ 2.02
SHANK1-206ENST00000468654 GTF2E1P29083 439 aaPredicted RBP27.63■■■□□ 2.01
SHANK1-206ENST00000468654 PDIA6Q15084 440 aa27.63■■■□□ 2.01
SHANK1-206ENST00000468654 JMYQ8N9B5 988 aa27.63■■■□□ 2.01
SHANK1-206ENST00000468654 NEUROD2Q15784 382 aa27.62■■■□□ 2.01
SHANK1-206ENST00000468654 CCDC93Q567U6 631 aa27.62■■■□□ 2.01
SHANK1-206ENST00000468654 DPY19L2Q6NUT2 758 aa27.62■■■□□ 2.01
SHANK1-206ENST00000468654 ADAMTS8Q9UP79 889 aa27.62■■■□□ 2.01
SHANK1-206ENST00000468654 TRIM35Q9UPQ4 493 aa27.62■■■□□ 2.01
SHANK1-206ENST00000468654 EIF2S2P20042 333 aaKnown RBP27.61■■■□□ 2.01
SHANK1-206ENST00000468654 CRY2Q49AN0 593 aa27.61■■■□□ 2.01
SHANK1-206ENST00000468654 OLFM4Q6UX06 510 aa27.61■■■□□ 2.01
SHANK1-206ENST00000468654 GIGYF2Q6Y7W6 1299 aaKnown RBP27.61■■■□□ 2.01
SHANK1-206ENST00000468654 NUTM1Q86Y26 1132 aa27.61■■■□□ 2.01
SHANK1-206ENST00000468654 CHL1O00533 1208 aa27.6■■■□□ 2.01
SHANK1-206ENST00000468654 GPTP24298 496 aa27.6■■■□□ 2.01
SHANK1-206ENST00000468654 ZNF34Q8IZ26 560 aa27.6■■■□□ 2.01
SHANK1-206ENST00000468654 COL4A5P29400 1685 aa27.59■■■□□ 2.01
SHANK1-206ENST00000468654 PROSER3Q2NL68 480 aa27.59■■■□□ 2.01
SHANK1-206ENST00000468654 DDNO94850 711 aaPredicted RBP27.58■■■□□ 2.01
SHANK1-206ENST00000468654 SUSD4Q5VX71 490 aa27.58■■■□□ 2.01
SHANK1-206ENST00000468654 NTSR2O95665 410 aa27.57■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms