RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 C21orf2O43822 256 aa23.04■■□□□ 1.28
COL7A1-206ENST00000466591 LMOD3Q0VAK6 560 aa23.04■■□□□ 1.28
COL7A1-206ENST00000466591 WDR43Q15061 677 aaKnown RBP eCLIP23.04■■□□□ 1.28
COL7A1-206ENST00000466591 TPTE2Q6XPS3 522 aa23.04■■□□□ 1.28
COL7A1-206ENST00000466591 TSPYL4Q9UJ04 414 aa23.04■■□□□ 1.28
COL7A1-206ENST00000466591 RRP7AQ9Y3A4 280 aaKnown RBP23.04■■□□□ 1.28
COL7A1-206ENST00000466591 RIPK4P57078 832 aa23.03■■□□□ 1.28
COL7A1-206ENST00000466591 DLG5Q8TDM6 1919 aa23.03■■□□□ 1.28
COL7A1-206ENST00000466591 MYBBP1AQ9BQG0 1328 aaKnown RBP23.03■■□□□ 1.28
COL7A1-206ENST00000466591 ZC3H4Q9UPT8 1303 aaKnown RBP23.03■■□□□ 1.28
COL7A1-206ENST00000466591 MYL6BP14649 208 aa23.02■■□□□ 1.28
COL7A1-206ENST00000466591 SOGA3Q5TF21 947 aa23.02■■□□□ 1.28
COL7A1-206ENST00000466591 MASTLQ96GX5 879 aa23.02■■□□□ 1.28
COL7A1-206ENST00000466591 RRAGCQ9HB90 399 aa23.02■■□□□ 1.28
COL7A1-206ENST00000466591 NBPF26B4DH59 902 aa23.01■■□□□ 1.27
COL7A1-206ENST00000466591 STYK1Q6J9G0 422 aa23.01■■□□□ 1.27
COL7A1-206ENST00000466591 NBPF10Q6P3W6 841 aaKnown RBP23.01■■□□□ 1.27
COL7A1-206ENST00000466591 NBPF15Q8N660 670 aa23.01■■□□□ 1.27
COL7A1-206ENST00000466591 LAMB4A4D0S4 1761 aa23.01■■□□□ 1.27
COL7A1-206ENST00000466591 EIF4A1P60842 406 aaKnown RBP23■■□□□ 1.27
COL7A1-206ENST00000466591 ANKRD31Q8N7Z5 1873 aa22.99■■□□□ 1.27
COL7A1-206ENST00000466591 APLP1P51693 650 aa22.99■■□□□ 1.27
COL7A1-206ENST00000466591 NEUROD2Q15784 382 aa22.99■■□□□ 1.27
COL7A1-206ENST00000466591 DPY19L2Q6NUT2 758 aa22.99■■□□□ 1.27
COL7A1-206ENST00000466591 PRPF40BQ6NWY9 871 aaKnown RBP22.99■■□□□ 1.27
COL7A1-206ENST00000466591 TAOK3Q9H2K8 898 aa22.99■■□□□ 1.27
COL7A1-206ENST00000466591 RBM46Q8TBY0 533 aaKnown RBP22.98■■□□□ 1.27
COL7A1-206ENST00000466591 NYXQ9GZU5 481 aa22.98■■□□□ 1.27
COL7A1-206ENST00000466591 KDM3BQ7LBC6 1761 aa22.98■■□□□ 1.27
COL7A1-206ENST00000466591 NFKBIEO00221 500 aa22.97■■□□□ 1.27
COL7A1-206ENST00000466591 RGL2O15211 777 aa22.97■■□□□ 1.27
COL7A1-206ENST00000466591 SRGNP10124 158 aa22.97■■□□□ 1.27
COL7A1-206ENST00000466591 NPR1P16066 1061 aa22.97■■□□□ 1.27
COL7A1-206ENST00000466591 ERFEQ4G0M1 354 aa22.97■■□□□ 1.27
COL7A1-206ENST00000466591 CCDC146Q8IYE0 955 aa22.97■■□□□ 1.27
COL7A1-206ENST00000466591 COL11A2P13942 1736 aaPredicted RBP22.96■■□□□ 1.27
COL7A1-206ENST00000466591 SBF1O95248 1867 aa22.96■■□□□ 1.27
COL7A1-206ENST00000466591 EIF2S2P20042 333 aaKnown RBP22.96■■□□□ 1.27
COL7A1-206ENST00000466591 HLFQ16534 295 aa22.96■■□□□ 1.27
COL7A1-206ENST00000466591 TNRC6CQ9HCJ0 1690 aaKnown RBP22.96■■□□□ 1.27
COL7A1-206ENST00000466591 GLTPD2A6NH11 291 aa22.95■■□□□ 1.26
COL7A1-206ENST00000466591 ZBTB3Q9H5J0 574 aa22.95■■□□□ 1.26
COL7A1-206ENST00000466591 LAS1LQ9Y4W2 734 aaKnown RBP22.95■■□□□ 1.26
COL7A1-206ENST00000466591 CACNA1SQ13698 1873 aa22.94■■□□□ 1.26
COL7A1-206ENST00000466591 MAP3K15Q6ZN16 1313 aa22.94■■□□□ 1.26
COL7A1-206ENST00000466591 ERVV-1B6SEH8 477 aa22.94■■□□□ 1.26
COL7A1-206ENST00000466591 VEGFAP15692 232 aaPredicted RBP22.94■■□□□ 1.26
COL7A1-206ENST00000466591 TMPOP42166 694 aaKnown RBP22.94■■□□□ 1.26
COL7A1-206ENST00000466591 FSTL1Q12841 308 aa22.94■■□□□ 1.26
COL7A1-206ENST00000466591 TIAM2Q8IVF5 1701 aa22.94■■□□□ 1.26
COL7A1-206ENST00000466591 GPTP24298 496 aa22.93■■□□□ 1.26
COL7A1-206ENST00000466591 CCDC93Q567U6 631 aa22.93■■□□□ 1.26
COL7A1-206ENST00000466591 ERBB4Q15303 1308 aa22.92■■□□□ 1.26
COL7A1-206ENST00000466591 ALDH1B1P30837 517 aa22.92■■□□□ 1.26
COL7A1-206ENST00000466591 SMC1BQ8NDV3 1235 aa22.92■■□□□ 1.26
COL7A1-206ENST00000466591 RPGRQ92834 1020 aaKnown RBP22.92■■□□□ 1.26
COL7A1-206ENST00000466591 TTLL7Q6ZT98 887 aa22.91■■□□□ 1.26
COL7A1-206ENST00000466591 RUNDC1Q96C34 613 aa22.91■■□□□ 1.26
COL7A1-206ENST00000466591 NUTM1Q86Y26 1132 aa22.9■■□□□ 1.26
COL7A1-206ENST00000466591 BABAM1Q9NWV8 329 aa22.9■■□□□ 1.26
COL7A1-206ENST00000466591 CCDC88AQ3V6T2 1871 aa22.9■■□□□ 1.26
COL7A1-206ENST00000466591 PRELPP51888 382 aa22.89■■□□□ 1.25
COL7A1-206ENST00000466591 NECTIN2Q92692 538 aa22.89■■□□□ 1.25
COL7A1-206ENST00000466591 LTBP3Q9NS15 1303 aa22.88■■□□□ 1.25
COL7A1-206ENST00000466591 PPP1R42Q7Z4L9 355 aa22.88■■□□□ 1.25
COL7A1-206ENST00000466591 TMX4Q9H1E5 349 aaPredicted RBP22.88■■□□□ 1.25
COL7A1-206ENST00000466591 SLX4Q8IY92 1834 aa22.87■■□□□ 1.25
COL7A1-206ENST00000466591 RTKN2Q8IZC4 609 aa22.87■■□□□ 1.25
COL7A1-206ENST00000466591 AIMP1Q12904 312 aaKnown RBP22.85■■□□□ 1.25
COL7A1-206ENST00000466591 ARFGEF2Q9Y6D5 1785 aa22.85■■□□□ 1.25
COL7A1-206ENST00000466591 FER1L6Q2WGJ9 1857 aa22.85■■□□□ 1.25
COL7A1-206ENST00000466591 FKBP4Q02790 459 aaKnown RBP eCLIP22.84■■□□□ 1.25
COL7A1-206ENST00000466591 PARP10Q53GL7 1025 aa22.84■■□□□ 1.25
COL7A1-206ENST00000466591 GIGYF2Q6Y7W6 1299 aaKnown RBP22.84■■□□□ 1.25
COL7A1-206ENST00000466591 ADAMTS8Q9UP79 889 aa22.84■■□□□ 1.25
COL7A1-206ENST00000466591 NUP98P52948 1817 aa22.83■■□□□ 1.25
COL7A1-206ENST00000466591 KLRG2A4D1S0 409 aaPredicted RBP22.83■■□□□ 1.25
COL7A1-206ENST00000466591 ANXA1P04083 346 aa22.83■■□□□ 1.25
COL7A1-206ENST00000466591 HSP90AB3PQ58FF7 597 aa22.83■■□□□ 1.25
COL7A1-206ENST00000466591 RBM17Q96I25 401 aaKnown RBP22.83■■□□□ 1.25
COL7A1-206ENST00000466591 ABCC12Q96J65 1359 aa22.82■■□□□ 1.24
COL7A1-206ENST00000466591 SUSD4Q5VX71 490 aa22.82■■□□□ 1.24
COL7A1-206ENST00000466591 PRKRIP1Q9H875 184 aaPredicted RBP22.82■■□□□ 1.24
COL7A1-206ENST00000466591 ZNF277Q9NRM2 450 aaPredicted RBP22.82■■□□□ 1.24
COL7A1-206ENST00000466591 UBN2Q6ZU65 1347 aa22.82■■□□□ 1.24
COL7A1-206ENST00000466591 IBTKQ9P2D0 1353 aaPredicted RBP22.81■■□□□ 1.24
COL7A1-206ENST00000466591 NLRP3Q96P20 1036 aa22.81■■□□□ 1.24
COL7A1-206ENST00000466591 UTP14AQ9BVJ6 771 aaKnown RBP22.81■■□□□ 1.24
COL7A1-206ENST00000466591 WDR90Q96KV7 1748 aa22.8■■□□□ 1.24
COL7A1-206ENST00000466591 IQCA1LA6NCM1 817 aa22.8■■□□□ 1.24
COL7A1-206ENST00000466591 TCERG1O14776 1098 aaKnown RBP22.8■■□□□ 1.24
COL7A1-206ENST00000466591 DDNO94850 711 aaPredicted RBP22.8■■□□□ 1.24
COL7A1-206ENST00000466591 COPS6Q7L5N1 327 aa22.8■■□□□ 1.24
COL7A1-206ENST00000466591 ZNF34Q8IZ26 560 aa22.8■■□□□ 1.24
COL7A1-206ENST00000466591 JDP2Q8WYK2 163 aa22.8■■□□□ 1.24
COL7A1-206ENST00000466591 DICER1Q9UPY3 1922 aaKnown RBP22.79■■□□□ 1.24
COL7A1-206ENST00000466591 HTRA3P83110 453 aa22.79■■□□□ 1.24
COL7A1-206ENST00000466591 PROSER3Q2NL68 480 aa22.79■■□□□ 1.24
COL7A1-206ENST00000466591 HDGFL1Q5TGJ6 251 aa22.79■■□□□ 1.24
COL7A1-206ENST00000466591 CC2D2BQ6DHV5 1058 aa22.79■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms