RNA–Protein interactions for RNA: ENST00000466411.1

CLDN4-204, Transcript of claudin 4, humanhuman

TSL 4

Gene CLDN4, Length 593 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-204ENST00000466411 ASAP1Q9ULH1 1129 aa9.3□□□□□ -0.92
CLDN4-204ENST00000466411 TM4SF1P30408 202 aa9.29□□□□□ -0.92
CLDN4-204ENST00000466411 HOXC9P31274 260 aa9.29□□□□□ -0.92
CLDN4-204ENST00000466411 FXR1P51114 621 aaKnown RBP eCLIP9.29□□□□□ -0.92
CLDN4-204ENST00000466411 DDX10Q13206 875 aaKnown RBP9.29□□□□□ -0.92
CLDN4-204ENST00000466411 RC3H1Q5TC82 1133 aaKnown RBP9.29□□□□□ -0.92
CLDN4-204ENST00000466411 GCC1Q96CN9 775 aa9.29□□□□□ -0.92
CLDN4-204ENST00000466411 CAPNS2Q96L46 248 aa9.29□□□□□ -0.92
CLDN4-204ENST00000466411 GPR101Q96P66 508 aaPredicted RBP9.29□□□□□ -0.92
CLDN4-204ENST00000466411 RTCBQ9Y3I0 505 aaKnown RBP9.29□□□□□ -0.92
CLDN4-204ENST00000466411 POLRMTO00411 1230 aaKnown RBP9.28□□□□□ -0.92
CLDN4-204ENST00000466411 DLL1O00548 723 aa9.28□□□□□ -0.92
CLDN4-204ENST00000466411 CD44P16070 742 aaKnown RBP9.28□□□□□ -0.92
CLDN4-204ENST00000466411 ATP6V1AP38606 617 aa9.28□□□□□ -0.92
CLDN4-204ENST00000466411 CC2D1BQ5T0F9 858 aaKnown RBP9.28□□□□□ -0.92
CLDN4-204ENST00000466411 TSHZ2Q9NRE2 1034 aa9.28□□□□□ -0.92
CLDN4-204ENST00000466411 ZNF831Q5JPB2 1677 aa9.28□□□□□ -0.92
CLDN4-204ENST00000466411 COL5A3P25940 1745 aaPredicted RBP9.28□□□□□ -0.92
CLDN4-204ENST00000466411 KDRP35968 1356 aa9.27□□□□□ -0.93
CLDN4-204ENST00000466411 CUL9Q8IWT3 2517 aa9.27□□□□□ -0.93
CLDN4-204ENST00000466411 AFDNP55196 1824 aaKnown RBP9.27□□□□□ -0.93
CLDN4-204ENST00000466411 RPS6KA4O75676 772 aa9.27□□□□□ -0.93
CLDN4-204ENST00000466411 MAP2K2P36507 400 aa9.27□□□□□ -0.93
CLDN4-204ENST00000466411 PDAP1Q13442 181 aaKnown RBP9.27□□□□□ -0.93
CLDN4-204ENST00000466411 ERFEQ4G0M1 354 aa9.27□□□□□ -0.93
CLDN4-204ENST00000466411 CYP4F22Q6NT55 531 aa9.27□□□□□ -0.93
CLDN4-204ENST00000466411 VSIG10Q8N0Z9 540 aa9.27□□□□□ -0.93
CLDN4-204ENST00000466411 ZNF579Q8NAF0 562 aaKnown RBP9.27□□□□□ -0.93
CLDN4-204ENST00000466411 KIF12Q96FN5 646 aa9.27□□□□□ -0.93
CLDN4-204ENST00000466411 ATG3Q9NT62 314 aa9.27□□□□□ -0.93
CLDN4-204ENST00000466411 POLKQ9UBT6 870 aa9.27□□□□□ -0.93
CLDN4-204ENST00000466411 PCDH11XQ9BZA7 1347 aa9.27□□□□□ -0.93
CLDN4-204ENST00000466411 PCDH11YQ9BZA8 1340 aa9.27□□□□□ -0.93
CLDN4-204ENST00000466411 ADAMTS7Q9UKP4 1686 aa9.26□□□□□ -0.93
CLDN4-204ENST00000466411 NRXN2Q9P2S2 1712 aa9.26□□□□□ -0.93
CLDN4-204ENST00000466411 MAP3K13O43283 966 aa9.26□□□□□ -0.93
CLDN4-204ENST00000466411 GTPBP6O43824 516 aaPredicted RBP9.26□□□□□ -0.93
CLDN4-204ENST00000466411 FBLN1P23142 703 aa9.26□□□□□ -0.93
CLDN4-204ENST00000466411 RRS1Q15050 365 aaKnown RBP9.26□□□□□ -0.93
CLDN4-204ENST00000466411 CNTROBQ8N137 903 aa9.26□□□□□ -0.93
CLDN4-204ENST00000466411 BEGAINQ9BUH8 593 aa9.26□□□□□ -0.93
CLDN4-204ENST00000466411 NUDCQ9Y266 331 aa9.26□□□□□ -0.93
CLDN4-204ENST00000466411 MYBBP1AQ9BQG0 1328 aaKnown RBP9.26□□□□□ -0.93
CLDN4-204ENST00000466411 NCAPD2Q15021 1401 aa9.25□□□□□ -0.93
CLDN4-204ENST00000466411 IQCA1LA6NCM1 817 aa9.25□□□□□ -0.93
CLDN4-204ENST00000466411 PPM1GO15355 546 aaPredicted RBP9.25□□□□□ -0.93
CLDN4-204ENST00000466411 ANP32CO43423 234 aa9.25□□□□□ -0.93
CLDN4-204ENST00000466411 CA12O43570 354 aa9.25□□□□□ -0.93
CLDN4-204ENST00000466411 AOC2O75106 756 aa9.25□□□□□ -0.93
CLDN4-204ENST00000466411 RFC4P35249 363 aa9.25□□□□□ -0.93
CLDN4-204ENST00000466411 FMR1Q06787 632 aaKnown RBP eCLIP9.25□□□□□ -0.93
CLDN4-204ENST00000466411 CST9Q5W186 159 aa9.25□□□□□ -0.93
CLDN4-204ENST00000466411 MAP1SQ66K74 1059 aaPredicted RBP9.25□□□□□ -0.93
CLDN4-204ENST00000466411 IFNL1Q8IU54 200 aa9.25□□□□□ -0.93
CLDN4-204ENST00000466411 USHBP1Q8N6Y0 703 aa9.25□□□□□ -0.93
CLDN4-204ENST00000466411 TTLL6Q8N841 843 aa9.25□□□□□ -0.93
CLDN4-204ENST00000466411 DDX21Q9NR30 783 aaKnown RBP eCLIP9.25□□□□□ -0.93
CLDN4-204ENST00000466411 SRP68Q9UHB9 627 aaKnown RBP9.25□□□□□ -0.93
CLDN4-204ENST00000466411 CNTNAP4Q9C0A0 1308 aa9.25□□□□□ -0.93
CLDN4-204ENST00000466411 ECE1P42892 770 aa9.24□□□□□ -0.93
CLDN4-204ENST00000466411 TNNT2P45379 298 aaPredicted RBP9.24□□□□□ -0.93
CLDN4-204ENST00000466411 PHF12Q96QT6 1004 aa9.24□□□□□ -0.93
CLDN4-204ENST00000466411 PNNQ9H307 717 aaKnown RBP9.24□□□□□ -0.93
CLDN4-204ENST00000466411 ABT1Q9ULW3 272 aaKnown RBP9.24□□□□□ -0.93
CLDN4-204ENST00000466411 EMILIN1Q9Y6C2 1016 aa9.24□□□□□ -0.93
CLDN4-204ENST00000466411 USP42Q9H9J4 1324 aaKnown RBP9.24□□□□□ -0.93
CLDN4-204ENST00000466411 LTBP3Q9NS15 1303 aa9.24□□□□□ -0.93
CLDN4-204ENST00000466411 COL6A3P12111 3177 aa9.24□□□□□ -0.93
CLDN4-204ENST00000466411 TRPM7Q96QT4 1865 aa9.23□□□□□ -0.93
CLDN4-204ENST00000466411 DIAPH1O60610 1272 aaKnown RBP9.23□□□□□ -0.93
CLDN4-204ENST00000466411 TATP17735 454 aaPredicted RBP9.23□□□□□ -0.93
CLDN4-204ENST00000466411 PSEN1P49768 467 aa9.23□□□□□ -0.93
CLDN4-204ENST00000466411 MTHFSP49914 203 aa9.23□□□□□ -0.93
CLDN4-204ENST00000466411 RAPGEF4Q8WZA2 1011 aa9.23□□□□□ -0.93
CLDN4-204ENST00000466411 PRKRIP1Q9H875 184 aaPredicted RBP9.23□□□□□ -0.93
CLDN4-204ENST00000466411 COL3A1P02461 1466 aaPredicted RBP9.22□□□□□ -0.93
CLDN4-204ENST00000466411 NEFMP07197 916 aa9.22□□□□□ -0.93
CLDN4-204ENST00000466411 PPP2R1AP30153 589 aa9.22□□□□□ -0.93
CLDN4-204ENST00000466411 HSP90AB2PQ58FF8 381 aa9.22□□□□□ -0.93
CLDN4-204ENST00000466411 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.22□□□□□ -0.93
CLDN4-204ENST00000466411 TLL2Q9Y6L7 1015 aa9.22□□□□□ -0.93
CLDN4-204ENST00000466411 C19orf67A6NJJ6 358 aa9.21□□□□□ -0.94
CLDN4-204ENST00000466411 BRPF1P55201 1214 aaPredicted RBP9.21□□□□□ -0.94
CLDN4-204ENST00000466411 EAPPQ56P03 285 aaPredicted RBP9.21□□□□□ -0.94
CLDN4-204ENST00000466411 EPHX2P34913 555 aa9.2□□□□□ -0.94
CLDN4-204ENST00000466411 EIF4A2Q14240 407 aaKnown RBP9.2□□□□□ -0.94
CLDN4-204ENST00000466411 AMOTQ4VCS5 1084 aa9.2□□□□□ -0.94
CLDN4-204ENST00000466411 NBPF15Q8N660 670 aa9.2□□□□□ -0.94
CLDN4-204ENST00000466411 ZIC5Q96T25 663 aa9.2□□□□□ -0.94
CLDN4-204ENST00000466411 SPG7Q9UQ90 795 aa9.2□□□□□ -0.94
CLDN4-204ENST00000466411 ANKRD31Q8N7Z5 1873 aa9.19□□□□□ -0.94
CLDN4-204ENST00000466411 C21orf2O43822 256 aa9.19□□□□□ -0.94
CLDN4-204ENST00000466411 TMOD3Q9NYL9 352 aa9.19□□□□□ -0.94
CLDN4-204ENST00000466411 HACL1Q9UJ83 578 aa9.19□□□□□ -0.94
CLDN4-204ENST00000466411 SLX4Q8IY92 1834 aa9.19□□□□□ -0.94
CLDN4-204ENST00000466411 HSP90AB1P08238 724 aaKnown RBP9.18□□□□□ -0.94
CLDN4-204ENST00000466411 IL13P35225 146 aa9.18□□□□□ -0.94
CLDN4-204ENST00000466411 GRM1Q13255 1194 aa9.18□□□□□ -0.94
CLDN4-204ENST00000466411 NFIXQ14938 502 aa9.18□□□□□ -0.94
CLDN4-204ENST00000466411 CIAPIN1Q6FI81 312 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms