RNA–Protein interactions for RNA: ENST00000465563.5

SMC4-205, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 747 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-205ENST00000465563 TFIP11Q9UBB9 837 aaKnown RBP11.38□□□□□ -0.59
SMC4-205ENST00000465563 PIK3R2O00459 728 aa11.37□□□□□ -0.59
SMC4-205ENST00000465563 HOXB4P17483 251 aaPredicted RBP11.37□□□□□ -0.59
SMC4-205ENST00000465563 SH3PXD2AQ5TCZ1 1133 aa11.37□□□□□ -0.59
SMC4-205ENST00000465563 STRN4Q9NRL3 753 aa11.37□□□□□ -0.59
SMC4-205ENST00000465563 KLF15Q9UIH9 416 aa11.37□□□□□ -0.59
SMC4-205ENST00000465563 ZNF468Q5VIY5 522 aaPredicted RBP11.36□□□□□ -0.59
SMC4-205ENST00000465563 LINC00114Q6XXX2 140 aa11.36□□□□□ -0.59
SMC4-205ENST00000465563 ALYREFQ86V81 257 aaKnown RBP11.36□□□□□ -0.59
SMC4-205ENST00000465563 RHPN1Q8TCX5 695 aa11.36□□□□□ -0.59
SMC4-205ENST00000465563 C7orf43Q8WVR3 580 aa11.36□□□□□ -0.59
SMC4-205ENST00000465563 MSTNO14793 375 aa11.35□□□□□ -0.59
SMC4-205ENST00000465563 RASA1P20936 1047 aa11.35□□□□□ -0.59
SMC4-205ENST00000465563 C1orf53Q5VUE5 145 aa11.35□□□□□ -0.59
SMC4-205ENST00000465563 TSEN2Q8NCE0 465 aaKnown RBP11.35□□□□□ -0.59
SMC4-205ENST00000465563 MAFBQ9Y5Q3 323 aaPredicted RBP11.35□□□□□ -0.59
SMC4-205ENST00000465563 SFI1A8K8P3 1242 aa11.34□□□□□ -0.59
SMC4-205ENST00000465563 HIRAP54198 1017 aaPredicted RBP11.34□□□□□ -0.59
SMC4-205ENST00000465563 PCBP4P57723 403 aaKnown RBP11.34□□□□□ -0.59
SMC4-205ENST00000465563 FCHSD1Q86WN1 690 aa11.34□□□□□ -0.59
SMC4-205ENST00000465563 A6NJR5 290 aa11.33□□□□□ -0.6
SMC4-205ENST00000465563 GNB5O14775 395 aa11.33□□□□□ -0.6
SMC4-205ENST00000465563 DKK1O94907 266 aa11.33□□□□□ -0.6
SMC4-205ENST00000465563 CHSY3Q70JA7 882 aa11.33□□□□□ -0.6
SMC4-205ENST00000465563 CALR3Q96L12 384 aaKnown RBP11.33□□□□□ -0.6
SMC4-205ENST00000465563 HCN4Q9Y3Q4 1203 aa11.33□□□□□ -0.6
SMC4-205ENST00000465563 ITGB2P05107 769 aa11.32□□□□□ -0.6
SMC4-205ENST00000465563 COL8A1P27658 744 aa11.32□□□□□ -0.6
SMC4-205ENST00000465563 DGKGP49619 791 aa11.32□□□□□ -0.6
SMC4-205ENST00000465563 POTEAQ6S8J7 498 aa11.32□□□□□ -0.6
SMC4-205ENST00000465563 SPOCK3Q9BQ16 436 aa11.32□□□□□ -0.6
SMC4-205ENST00000465563 ANKIB1Q9P2G1 1089 aa11.32□□□□□ -0.6
SMC4-205ENST00000465563 PPP1R12BO60237 982 aaPredicted RBP11.31□□□□□ -0.6
SMC4-205ENST00000465563 GRIN2CQ14957 1233 aa11.31□□□□□ -0.6
SMC4-205ENST00000465563 PHACTR1Q9C0D0 580 aa11.31□□□□□ -0.6
SMC4-205ENST00000465563 KRBA1A5PL33 1030 aa11.3□□□□□ -0.6
SMC4-205ENST00000465563 SEC13P55735 322 aa11.3□□□□□ -0.6
SMC4-205ENST00000465563 LARP1Q6PKG0 1096 aaKnown RBP11.3□□□□□ -0.6
SMC4-205ENST00000465563 PPP1R12CQ9BZL4 782 aa11.3□□□□□ -0.6
SMC4-205ENST00000465563 SUV39H2Q9H5I1 410 aa11.3□□□□□ -0.6
SMC4-205ENST00000465563 C21orf2O43822 256 aa11.29□□□□□ -0.6
SMC4-205ENST00000465563 SYT9Q86SS6 491 aa11.29□□□□□ -0.6
SMC4-205ENST00000465563 ATAD2Q6PL18 1390 aa11.28□□□□□ -0.6
SMC4-205ENST00000465563 SFSWAPQ12872 951 aaKnown RBP11.28□□□□□ -0.6
SMC4-205ENST00000465563 STAG2Q8N3U4 1231 aa11.28□□□□□ -0.6
SMC4-205ENST00000465563 GAS2L2Q8NHY3 880 aa11.28□□□□□ -0.6
SMC4-205ENST00000465563 NOP53Q9NZM5 478 aaKnown RBP11.28□□□□□ -0.6
SMC4-205ENST00000465563 ELOA3CA0A087WX78 387 aaPredicted RBP11.27□□□□□ -0.61
SMC4-205ENST00000465563 ELOA3DA6NLF2 546 aaPredicted RBP11.27□□□□□ -0.61
SMC4-205ENST00000465563 PROCP04070 461 aa11.27□□□□□ -0.61
SMC4-205ENST00000465563 ALAS2P22557 587 aa11.27□□□□□ -0.61
SMC4-205ENST00000465563 ELOA3BQ3SY89 546 aa11.27□□□□□ -0.61
SMC4-205ENST00000465563 ELOA3Q8NG57 546 aa11.27□□□□□ -0.61
SMC4-205ENST00000465563 SCG3Q8WXD2 468 aaKnown RBP11.27□□□□□ -0.61
SMC4-205ENST00000465563 HSH2DQ96JZ2 352 aa11.27□□□□□ -0.61
SMC4-205ENST00000465563 CEP63Q96MT8 703 aa11.27□□□□□ -0.61
SMC4-205ENST00000465563 SUSD3Q96L08 255 aa11.26□□□□□ -0.61
SMC4-205ENST00000465563 C2orf49Q9BVC5 232 aaPredicted RBP11.26□□□□□ -0.61
SMC4-205ENST00000465563 SIN3BO75182 1162 aa11.25□□□□□ -0.61
SMC4-205ENST00000465563 KANK4Q5T7N3 995 aaPredicted RBP11.25□□□□□ -0.61
SMC4-205ENST00000465563 ALDH16A1Q8IZ83 802 aa11.25□□□□□ -0.61
SMC4-205ENST00000465563 CHMP7Q8WUX9 453 aaPredicted RBP11.25□□□□□ -0.61
SMC4-205ENST00000465563 HINFPQ9BQA5 517 aa11.25□□□□□ -0.61
SMC4-205ENST00000465563 BRD7Q9NPI1 651 aa11.25□□□□□ -0.61
SMC4-205ENST00000465563 SPEM2Q0P670 501 aa11.24□□□□□ -0.61
SMC4-205ENST00000465563 PTK7Q13308 1070 aa11.24□□□□□ -0.61
SMC4-205ENST00000465563 NEUROD1Q13562 356 aa11.24□□□□□ -0.61
SMC4-205ENST00000465563 CRTC2Q53ET0 693 aaPredicted RBP11.24□□□□□ -0.61
SMC4-205ENST00000465563 ZNF280CQ8ND82 737 aa11.24□□□□□ -0.61
SMC4-205ENST00000465563 SLC30A3Q99726 388 aa11.24□□□□□ -0.61
SMC4-205ENST00000465563 LOC100996750A0A140TA64 210 aa11.23□□□□□ -0.61
SMC4-205ENST00000465563 LMOD1P29536 600 aaPredicted RBP11.23□□□□□ -0.61
SMC4-205ENST00000465563 DPYDQ12882 1025 aa11.23□□□□□ -0.61
SMC4-205ENST00000465563 HIF1AQ16665 826 aa11.23□□□□□ -0.61
SMC4-205ENST00000465563 KRTAP4-6Q9BYQ5 205 aa11.23□□□□□ -0.61
SMC4-205ENST00000465563 VRTNQ9H8Y1 702 aa11.23□□□□□ -0.61
SMC4-205ENST00000465563 KCNH4Q9UQ05 1017 aa11.23□□□□□ -0.61
SMC4-205ENST00000465563 FAM196BA6NMK8 535 aa11.22□□□□□ -0.61
SMC4-205ENST00000465563 ADARB2-AS1A8MUL3 147 aa11.22□□□□□ -0.61
SMC4-205ENST00000465563 KCNQ4P56696 695 aa11.22□□□□□ -0.61
SMC4-205ENST00000465563 TYRO3Q06418 890 aa11.22□□□□□ -0.61
SMC4-205ENST00000465563 MDFIQ99750 246 aa11.22□□□□□ -0.61
SMC4-205ENST00000465563 USP17L15C9J2P7 530 aa11.21□□□□□ -0.61
SMC4-205ENST00000465563 USP17L10C9JJH3 530 aa11.21□□□□□ -0.61
SMC4-205ENST00000465563 USP17L13C9JLJ4 530 aa11.21□□□□□ -0.61
SMC4-205ENST00000465563 USP17L12C9JPN9 530 aa11.21□□□□□ -0.61
SMC4-205ENST00000465563 USP17L11C9JVI0 530 aa11.21□□□□□ -0.61
SMC4-205ENST00000465563 USP17L21D6R901 530 aa11.21□□□□□ -0.61
SMC4-205ENST00000465563 USP17L18D6R9N7 530 aa11.21□□□□□ -0.61
SMC4-205ENST00000465563 USP17L22D6RA61 530 aa11.21□□□□□ -0.61
SMC4-205ENST00000465563 USP17L17D6RBQ6 530 aa11.21□□□□□ -0.61
SMC4-205ENST00000465563 USP17L19D6RCP7 530 aa11.21□□□□□ -0.61
SMC4-205ENST00000465563 USP17L20D6RJB6 530 aa11.21□□□□□ -0.61
SMC4-205ENST00000465563 USP17L24Q0WX57 530 aa11.21□□□□□ -0.61
SMC4-205ENST00000465563 ANKMY2Q8IV38 441 aa11.21□□□□□ -0.61
SMC4-205ENST00000465563 NGLY1Q96IV0 654 aa11.21□□□□□ -0.61
SMC4-205ENST00000465563 TNFRSF25Q93038 417 aa11.2□□□□□ -0.62
SMC4-205ENST00000465563 BTLAQ7Z6A9 289 aa11.19□□□□□ -0.62
SMC4-205ENST00000465563 RAB44Q7Z6P3 723 aaPredicted RBP11.19□□□□□ -0.62
SMC4-205ENST00000465563 TRIM11Q96F44 468 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms