RNA–Protein interactions for RNA: ENST00000465039.5

LIMD1-203, Transcript of LIM domains containing 1, humanhuman

TSL 5

Gene LIMD1, Length 676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-203ENST00000465039 CHPF2Q9P2E5 772 aa17.66■□□□□ 0.42
LIMD1-203ENST00000465039 PARP3Q9Y6F1 533 aa17.66■□□□□ 0.42
LIMD1-203ENST00000465039 IBTKQ9P2D0 1353 aaPredicted RBP17.66■□□□□ 0.42
LIMD1-203ENST00000465039 MYL6BP14649 208 aa17.65■□□□□ 0.42
LIMD1-203ENST00000465039 TRMT2AQ8IZ69 625 aaKnown RBP17.65■□□□□ 0.42
LIMD1-203ENST00000465039 STK31Q9BXU1 1019 aa17.65■□□□□ 0.42
LIMD1-203ENST00000465039 SPINK5Q9NQ38 1064 aaPredicted RBP17.65■□□□□ 0.42
LIMD1-203ENST00000465039 ZBED9Q6R2W3 1325 aa17.65■□□□□ 0.42
LIMD1-203ENST00000465039 POLRMTO00411 1230 aaKnown RBP17.64■□□□□ 0.41
LIMD1-203ENST00000465039 PIP4K2AP48426 406 aaPredicted RBP17.64■□□□□ 0.41
LIMD1-203ENST00000465039 NFIXQ14938 502 aa17.64■□□□□ 0.41
LIMD1-203ENST00000465039 TSPYL6Q8N831 410 aa17.64■□□□□ 0.41
LIMD1-203ENST00000465039 NUP98P52948 1817 aa17.63■□□□□ 0.41
LIMD1-203ENST00000465039 SENP3-EIF4A1A0A087X0R7 540 aa17.63■□□□□ 0.41
LIMD1-203ENST00000465039 HNRNPUQ00839 825 aaKnown RBP eCLIP17.63■□□□□ 0.41
LIMD1-203ENST00000465039 EXOSC9Q06265 439 aaKnown RBP17.63■□□□□ 0.41
LIMD1-203ENST00000465039 DDR1Q08345 913 aa17.63■□□□□ 0.41
LIMD1-203ENST00000465039 PROSER3Q2NL68 480 aa17.63■□□□□ 0.41
LIMD1-203ENST00000465039 HSP90AB3PQ58FF7 597 aa17.63■□□□□ 0.41
LIMD1-203ENST00000465039 GIGYF2Q6Y7W6 1299 aaKnown RBP17.63■□□□□ 0.41
LIMD1-203ENST00000465039 ANKRD36CQ5JPF3 1778 aa17.62■□□□□ 0.41
LIMD1-203ENST00000465039 ELL2O00472 640 aaPredicted RBP17.62■□□□□ 0.41
LIMD1-203ENST00000465039 VAMP4O75379 141 aa17.62■□□□□ 0.41
LIMD1-203ENST00000465039 SETDB2Q96T68 719 aa17.62■□□□□ 0.41
LIMD1-203ENST00000465039 FHDC1Q9C0D6 1143 aaPredicted RBP17.62■□□□□ 0.41
LIMD1-203ENST00000465039 RNF123Q5XPI4 1314 aa17.62■□□□□ 0.41
LIMD1-203ENST00000465039 TTLL7Q6ZT98 887 aa17.61■□□□□ 0.41
LIMD1-203ENST00000465039 COPS6Q7L5N1 327 aa17.61■□□□□ 0.41
LIMD1-203ENST00000465039 PLBD2Q8NHP8 589 aa17.61■□□□□ 0.41
LIMD1-203ENST00000465039 XAGE3Q8WTP9 111 aa17.61■□□□□ 0.41
LIMD1-203ENST00000465039 SYT17Q9BSW7 474 aa17.61■□□□□ 0.41
LIMD1-203ENST00000465039 AFDNP55196 1824 aaKnown RBP17.61■□□□□ 0.41
LIMD1-203ENST00000465039 DDX58O95786 925 aaKnown RBP17.6■□□□□ 0.41
LIMD1-203ENST00000465039 PARP10Q53GL7 1025 aa17.6■□□□□ 0.41
LIMD1-203ENST00000465039 TBC1D9BQ66K14 1250 aa17.6■□□□□ 0.41
LIMD1-203ENST00000465039 PDZRN3Q9UPQ7 1066 aa17.6■□□□□ 0.41
LIMD1-203ENST00000465039 RIC1Q4ADV7 1423 aa17.6■□□□□ 0.41
LIMD1-203ENST00000465039 TGFB2P61812 414 aa17.59■□□□□ 0.41
LIMD1-203ENST00000465039 ANKRD13DQ6ZTN6 518 aa17.59■□□□□ 0.41
LIMD1-203ENST00000465039 NECTIN2Q92692 538 aa17.59■□□□□ 0.41
LIMD1-203ENST00000465039 ARFGEF2Q9Y6D5 1785 aa17.58■□□□□ 0.41
LIMD1-203ENST00000465039 ANXA1P04083 346 aa17.58■□□□□ 0.4
LIMD1-203ENST00000465039 SERPINB2P05120 415 aa17.58■□□□□ 0.4
LIMD1-203ENST00000465039 ZNF34Q8IZ26 560 aa17.58■□□□□ 0.4
LIMD1-203ENST00000465039 NYXQ9GZU5 481 aa17.58■□□□□ 0.4
LIMD1-203ENST00000465039 ZBTB3Q9H5J0 574 aa17.58■□□□□ 0.4
LIMD1-203ENST00000465039 NIP7Q9Y221 180 aaKnown RBP eCLIP17.58■□□□□ 0.4
LIMD1-203ENST00000465039 TRIM28Q13263 835 aaKnown RBP17.57■□□□□ 0.4
LIMD1-203ENST00000465039 HLFQ16534 295 aa17.57■□□□□ 0.4
LIMD1-203ENST00000465039 CNBD1Q8NA66 436 aa17.57■□□□□ 0.4
LIMD1-203ENST00000465039 KIAA1551Q9HCM1 1747 aa17.57■□□□□ 0.4
LIMD1-203ENST00000465039 TCIRG1Q13488 830 aa17.56■□□□□ 0.4
LIMD1-203ENST00000465039 ALDH1L2Q3SY69 923 aa17.56■□□□□ 0.4
LIMD1-203ENST00000465039 TPTE2Q6XPS3 522 aa17.56■□□□□ 0.4
LIMD1-203ENST00000465039 CDCA7LQ96GN5 454 aa17.56■□□□□ 0.4
LIMD1-203ENST00000465039 PXDNLA1KZ92 1463 aa17.56■□□□□ 0.4
LIMD1-203ENST00000465039 SLC4A2P04920 1241 aa17.55■□□□□ 0.4
LIMD1-203ENST00000465039 ST5P78524 1137 aa17.55■□□□□ 0.4
LIMD1-203ENST00000465039 NBPF5PQ86XG9 351 aaPredicted RBP17.55■□□□□ 0.4
LIMD1-203ENST00000465039 BRIP1Q9BX63 1249 aa17.55■□□□□ 0.4
LIMD1-203ENST00000465039 DLEC1Q9Y238 1755 aa17.55■□□□□ 0.4
LIMD1-203ENST00000465039 AIMP1Q12904 312 aaKnown RBP17.54■□□□□ 0.4
LIMD1-203ENST00000465039 FLIIQ13045 1269 aa17.54■□□□□ 0.4
LIMD1-203ENST00000465039 PRR5LQ6MZQ0 368 aa17.54■□□□□ 0.4
LIMD1-203ENST00000465039 KSR2Q6VAB6 950 aa17.54■□□□□ 0.4
LIMD1-203ENST00000465039 BICDL1Q6ZP65 573 aa17.54■□□□□ 0.4
LIMD1-203ENST00000465039 PPP1R42Q7Z4L9 355 aa17.54■□□□□ 0.4
LIMD1-203ENST00000465039 UBN2Q6ZU65 1347 aa17.53■□□□□ 0.4
LIMD1-203ENST00000465039 PDE6BP35913 854 aa17.53■□□□□ 0.4
LIMD1-203ENST00000465039 PHAXQ9H814 394 aaKnown RBP17.53■□□□□ 0.4
LIMD1-203ENST00000465039 BRCA1P38398 1863 aaKnown RBP17.52■□□□□ 0.4
LIMD1-203ENST00000465039 ANKRD31Q8N7Z5 1873 aa17.52■□□□□ 0.4
LIMD1-203ENST00000465039 BRPF1P55201 1214 aaPredicted RBP17.52■□□□□ 0.4
LIMD1-203ENST00000465039 RIC3Q7Z5B4 369 aa17.52■□□□□ 0.4
LIMD1-203ENST00000465039 ISCA1Q9BUE6 129 aa17.52■□□□□ 0.4
LIMD1-203ENST00000465039 PTPRCP08575 1304 aa17.51■□□□□ 0.39
LIMD1-203ENST00000465039 KLRG2A4D1S0 409 aaPredicted RBP17.51■□□□□ 0.39
LIMD1-203ENST00000465039 DCAF8L1A6NGE4 600 aa17.51■□□□□ 0.39
LIMD1-203ENST00000465039 NPHP1O15259 732 aa17.51■□□□□ 0.39
LIMD1-203ENST00000465039 NLRP10Q86W26 655 aa17.51■□□□□ 0.39
LIMD1-203ENST00000465039 KLHL34Q8N239 644 aa17.51■□□□□ 0.39
LIMD1-203ENST00000465039 METTL22Q9BUU2 404 aaPredicted RBP17.51■□□□□ 0.39
LIMD1-203ENST00000465039 ADCY9O60503 1353 aa17.51■□□□□ 0.39
LIMD1-203ENST00000465039 NTSR2O95665 410 aa17.5■□□□□ 0.39
LIMD1-203ENST00000465039 HSP90B1P14625 803 aaKnown RBP17.5■□□□□ 0.39
LIMD1-203ENST00000465039 NEXNQ0ZGT2 675 aa17.5■□□□□ 0.39
LIMD1-203ENST00000465039 CCDC191Q8NCU4 936 aa17.5■□□□□ 0.39
LIMD1-203ENST00000465039 NLGN2Q8NFZ4 835 aa17.5■□□□□ 0.39
LIMD1-203ENST00000465039 UTP14AQ9BVJ6 771 aaKnown RBP17.5■□□□□ 0.39
LIMD1-203ENST00000465039 PI4KAP2A4QPH2 592 aa17.49■□□□□ 0.39
LIMD1-203ENST00000465039 GPTP24298 496 aa17.49■□□□□ 0.39
LIMD1-203ENST00000465039 FKBP5Q13451 457 aaPredicted RBP17.49■□□□□ 0.39
LIMD1-203ENST00000465039 PI4KAP1Q8N8J0 262 aa17.49■□□□□ 0.39
LIMD1-203ENST00000465039 SH3TC1Q8TE82 1336 aa17.48■□□□□ 0.39
LIMD1-203ENST00000465039 GTF2E1P29083 439 aaPredicted RBP17.48■□□□□ 0.39
LIMD1-203ENST00000465039 SLC10A5Q5PT55 438 aa17.48■□□□□ 0.39
LIMD1-203ENST00000465039 SUSD4Q5VX71 490 aa17.48■□□□□ 0.39
LIMD1-203ENST00000465039 MAP3K2Q9Y2U5 619 aa17.48■□□□□ 0.39
LIMD1-203ENST00000465039 LAMB2P55268 1798 aa17.48■□□□□ 0.39
LIMD1-203ENST00000465039 H0YIN7 160 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms