RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 COL6A3P12111 3177 aa3.92□□□□□ -1.78
USP40-211ENST00000464956 WTIPA6NIX2 430 aaPredicted RBP3.92□□□□□ -1.78
USP40-211ENST00000464956 EVI5O60447 810 aa3.92□□□□□ -1.78
USP40-211ENST00000464956 ZPR1O75312 459 aa3.92□□□□□ -1.78
USP40-211ENST00000464956 PDE6BP35913 854 aa3.92□□□□□ -1.78
USP40-211ENST00000464956 BCAMP50895 628 aa3.92□□□□□ -1.78
USP40-211ENST00000464956 FKBP4Q02790 459 aaKnown RBP eCLIP3.92□□□□□ -1.78
USP40-211ENST00000464956 SLC9C1Q4G0N8 1177 aa3.92□□□□□ -1.78
USP40-211ENST00000464956 IL27Q8NEV9 243 aa3.92□□□□□ -1.78
USP40-211ENST00000464956 ZC3H15Q8WU90 426 aaKnown RBP3.92□□□□□ -1.78
USP40-211ENST00000464956 RAPGEF4Q8WZA2 1011 aa3.92□□□□□ -1.78
USP40-211ENST00000464956 ZNF333Q96JL9 665 aa3.92□□□□□ -1.78
USP40-211ENST00000464956 ZNF277Q9NRM2 450 aaPredicted RBP3.92□□□□□ -1.78
USP40-211ENST00000464956 SCN4AP35499 1836 aa3.92□□□□□ -1.78
USP40-211ENST00000464956 TRIOBPQ9H2D6 2365 aa3.92□□□□□ -1.78
USP40-211ENST00000464956 SERPINB2P05120 415 aa3.91□□□□□ -1.78
USP40-211ENST00000464956 IARSP41252 1262 aaKnown RBP3.91□□□□□ -1.78
USP40-211ENST00000464956 KCTD2Q14681 263 aa3.91□□□□□ -1.78
USP40-211ENST00000464956 TMEM31Q5JXX7 168 aa3.91□□□□□ -1.78
USP40-211ENST00000464956 ZNF697Q5TEC3 545 aa3.91□□□□□ -1.78
USP40-211ENST00000464956 PRPF40BQ6NWY9 871 aaKnown RBP3.91□□□□□ -1.78
USP40-211ENST00000464956 RTKN2Q8IZC4 609 aa3.91□□□□□ -1.78
USP40-211ENST00000464956 TDHQ8IZJ6 230 aa3.91□□□□□ -1.78
USP40-211ENST00000464956 NKX2-3Q8TAU0 364 aa3.91□□□□□ -1.78
USP40-211ENST00000464956 LTV1Q96GA3 475 aaPredicted RBP3.91□□□□□ -1.78
USP40-211ENST00000464956 ERO1AQ96HE7 468 aa3.91□□□□□ -1.78
USP40-211ENST00000464956 FAM161BQ96MY7 647 aa3.91□□□□□ -1.78
USP40-211ENST00000464956 LRFN3Q9BTN0 628 aa3.91□□□□□ -1.78
USP40-211ENST00000464956 TMOD3Q9NYL9 352 aa3.91□□□□□ -1.78
USP40-211ENST00000464956 PGAP2Q9UHJ9 254 aa3.91□□□□□ -1.78
USP40-211ENST00000464956 ASAP1Q9ULH1 1129 aa3.91□□□□□ -1.78
USP40-211ENST00000464956 KIF1BO60333 1816 aa3.91□□□□□ -1.78
USP40-211ENST00000464956 DOT1LQ8TEK3 1739 aa3.9□□□□□ -1.78
USP40-211ENST00000464956 PPLO60437 1756 aa3.9□□□□□ -1.79
USP40-211ENST00000464956 POTEB2H3BUK9 544 aa3.9□□□□□ -1.79
USP40-211ENST00000464956 RGL2O15211 777 aa3.9□□□□□ -1.79
USP40-211ENST00000464956 ALDH1A1P00352 501 aa3.9□□□□□ -1.79
USP40-211ENST00000464956 MYCP01106 439 aaPredicted RBP3.9□□□□□ -1.79
USP40-211ENST00000464956 SREBF2Q12772 1141 aa3.9□□□□□ -1.79
USP40-211ENST00000464956 NFIXQ14938 502 aa3.9□□□□□ -1.79
USP40-211ENST00000464956 STYK1Q6J9G0 422 aa3.9□□□□□ -1.79
USP40-211ENST00000464956 USP48Q86UV5 1035 aa3.9□□□□□ -1.79
USP40-211ENST00000464956 RASAL3Q86YV0 1011 aa3.9□□□□□ -1.79
USP40-211ENST00000464956 ADAMTS19Q8TE59 1207 aa3.9□□□□□ -1.79
USP40-211ENST00000464956 UHRF1Q96T88 793 aaPredicted RBP3.9□□□□□ -1.79
USP40-211ENST00000464956 RBM42Q9BTD8 480 aaKnown RBP3.9□□□□□ -1.79
USP40-211ENST00000464956 BRIP1Q9BX63 1249 aa3.9□□□□□ -1.79
USP40-211ENST00000464956 CFHR5Q9BXR6 569 aa3.9□□□□□ -1.79
USP40-211ENST00000464956 EFCC1Q9HA90 598 aa3.9□□□□□ -1.79
USP40-211ENST00000464956 GPRC5DQ9NZD1 345 aa3.9□□□□□ -1.79
USP40-211ENST00000464956 MAP3K19Q56UN5 1328 aa3.9□□□□□ -1.79
USP40-211ENST00000464956 UBR3Q6ZT12 1888 aa3.9□□□□□ -1.79
USP40-211ENST00000464956 SZT2Q5T011 3432 aa3.89□□□□□ -1.79
USP40-211ENST00000464956 NPHP1O15259 732 aa3.89□□□□□ -1.79
USP40-211ENST00000464956 ST18O60284 1047 aa3.89□□□□□ -1.79
USP40-211ENST00000464956 RGS20O76081 388 aa3.89□□□□□ -1.79
USP40-211ENST00000464956 TATP17735 454 aaPredicted RBP3.89□□□□□ -1.79
USP40-211ENST00000464956 TM4SF4P48230 202 aa3.89□□□□□ -1.79
USP40-211ENST00000464956 ARHGEF6Q15052 776 aa3.89□□□□□ -1.79
USP40-211ENST00000464956 USPL1Q5W0Q7 1092 aa3.89□□□□□ -1.79
USP40-211ENST00000464956 KRT26Q7Z3Y9 468 aa3.89□□□□□ -1.79
USP40-211ENST00000464956 ATXN2LQ8WWM7 1075 aaKnown RBP3.89□□□□□ -1.79
USP40-211ENST00000464956 CDX2Q99626 313 aaPredicted RBP3.89□□□□□ -1.79
USP40-211ENST00000464956 GDF15Q99988 308 aa3.89□□□□□ -1.79
USP40-211ENST00000464956 ZNF692Q9BU19 519 aaPredicted RBP3.89□□□□□ -1.79
USP40-211ENST00000464956 CABP1Q9NZU7 370 aa3.89□□□□□ -1.79
USP40-211ENST00000464956 CD163L1Q9NR16 1453 aa3.89□□□□□ -1.79
USP40-211ENST00000464956 TTC21BQ7Z4L5 1316 aa3.89□□□□□ -1.79
USP40-211ENST00000464956 KRT37O76014 449 aa3.88□□□□□ -1.79
USP40-211ENST00000464956 FOSL2P15408 326 aa3.88□□□□□ -1.79
USP40-211ENST00000464956 APLP2Q06481 763 aa3.88□□□□□ -1.79
USP40-211ENST00000464956 IP6K1Q92551 441 aa3.88□□□□□ -1.79
USP40-211ENST00000464956 MASTLQ96GX5 879 aa3.88□□□□□ -1.79
USP40-211ENST00000464956 SLC4A1APQ9BWU0 796 aaKnown RBP3.88□□□□□ -1.79
USP40-211ENST00000464956 UBE2OQ9C0C9 1292 aaKnown RBP3.88□□□□□ -1.79
USP40-211ENST00000464956 NFAT5O94916 1531 aa3.88□□□□□ -1.79
USP40-211ENST00000464956 WASHC2AQ641Q2 1341 aa3.88□□□□□ -1.79
USP40-211ENST00000464956 CYP27B1O15528 508 aa3.87□□□□□ -1.79
USP40-211ENST00000464956 FARP2O94887 1054 aaPredicted RBP3.87□□□□□ -1.79
USP40-211ENST00000464956 CRKLP46109 303 aaKnown RBP3.87□□□□□ -1.79
USP40-211ENST00000464956 FKBP1BP68106 108 aa3.87□□□□□ -1.79
USP40-211ENST00000464956 ERMP1Q7Z2K6 904 aa3.87□□□□□ -1.79
USP40-211ENST00000464956 NIM1KQ8IY84 436 aa3.87□□□□□ -1.79
USP40-211ENST00000464956 CD99L2Q8TCZ2 262 aa3.87□□□□□ -1.79
USP40-211ENST00000464956 DCPSQ96C86 337 aaKnown RBP3.87□□□□□ -1.79
USP40-211ENST00000464956 ASB2Q96Q27 587 aa3.87□□□□□ -1.79
USP40-211ENST00000464956 BCL2L13Q9BXK5 485 aa3.87□□□□□ -1.79
USP40-211ENST00000464956 R3HDMLQ9H3Y0 253 aa3.87□□□□□ -1.79
USP40-211ENST00000464956 ATG3Q9NT62 314 aa3.87□□□□□ -1.79
USP40-211ENST00000464956 CARMIL3Q8ND23 1372 aa3.87□□□□□ -1.79
USP40-211ENST00000464956 MKI67P46013 3256 aaKnown RBP3.87□□□□□ -1.79
USP40-211ENST00000464956 H7C1D1 291 aa3.86□□□□□ -1.79
USP40-211ENST00000464956 SRGNP10124 158 aa3.86□□□□□ -1.79
USP40-211ENST00000464956 ITGB8P26012 769 aa3.86□□□□□ -1.79
USP40-211ENST00000464956 MRPS5P82675 430 aaKnown RBP3.86□□□□□ -1.79
USP40-211ENST00000464956 NHLH1Q02575 133 aa3.86□□□□□ -1.79
USP40-211ENST00000464956 COL9A2Q14055 689 aaPredicted RBP3.86□□□□□ -1.79
USP40-211ENST00000464956 UBE2Q1Q7Z7E8 422 aa3.86□□□□□ -1.79
USP40-211ENST00000464956 LARGE2Q8N3Y3 721 aa3.86□□□□□ -1.79
USP40-211ENST00000464956 C7orf43Q8WVR3 580 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms