RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 BTBD11A6QL63 1104 aa15.17■□□□□ 0.02
USP54-209ENST00000464635 STARD3NLO95772 234 aa15.17■□□□□ 0.02
USP54-209ENST00000464635 CHRNA5P30532 468 aa15.17■□□□□ 0.02
USP54-209ENST00000464635 ZNF526Q8TF50 670 aaPredicted RBP15.17■□□□□ 0.02
USP54-209ENST00000464635 FMNL2Q96PY5 1086 aa15.17■□□□□ 0.02
USP54-209ENST00000464635 BABAM1Q9NWV8 329 aa15.17■□□□□ 0.02
USP54-209ENST00000464635 SBF1O95248 1867 aa15.16■□□□□ 0.02
USP54-209ENST00000464635 A1BGP04217 495 aa15.16■□□□□ 0.02
USP54-209ENST00000464635 BRPF1P55201 1214 aaPredicted RBP15.16■□□□□ 0.02
USP54-209ENST00000464635 CFAP44Q96MT7 982 aa15.16■□□□□ 0.02
USP54-209ENST00000464635 ZNF330Q9Y3S2 320 aaPredicted RBP15.16■□□□□ 0.02
USP54-209ENST00000464635 CACNA1SQ13698 1873 aa15.16■□□□□ 0.02
USP54-209ENST00000464635 PIP4K2AP48426 406 aaPredicted RBP15.15■□□□□ 0.02
USP54-209ENST00000464635 AAMPQ13685 434 aa15.15■□□□□ 0.02
USP54-209ENST00000464635 BICDL1Q6ZP65 573 aa15.14■□□□□ 0.01
USP54-209ENST00000464635 RTF1Q92541 710 aaKnown RBP15.14■□□□□ 0.01
USP54-209ENST00000464635 TBC1D2BQ9UPU7 963 aa15.14■□□□□ 0.01
USP54-209ENST00000464635 SENP3-EIF4A1A0A087X0R7 540 aa15.13■□□□□ 0.01
USP54-209ENST00000464635 SERPINB2P05120 415 aa15.13■□□□□ 0.01
USP54-209ENST00000464635 PDE3AQ14432 1141 aa15.13■□□□□ 0.01
USP54-209ENST00000464635 CCDC88AQ3V6T2 1871 aa15.13■□□□□ 0.01
USP54-209ENST00000464635 TBC1D9BQ66K14 1250 aa15.13■□□□□ 0.01
USP54-209ENST00000464635 ARHGAP27Q6ZUM4 889 aa15.13■□□□□ 0.01
USP54-209ENST00000464635 TEX13AQ9BXU3 409 aaPredicted RBP15.13■□□□□ 0.01
USP54-209ENST00000464635 GPBP1L1Q9HC44 474 aaPredicted RBP15.13■□□□□ 0.01
USP54-209ENST00000464635 PIM2Q9P1W9 311 aa15.13■□□□□ 0.01
USP54-209ENST00000464635 USP16Q9Y5T5 823 aa15.13■□□□□ 0.01
USP54-209ENST00000464635 FANCIQ9NVI1 1328 aa15.13■□□□□ 0.01
USP54-209ENST00000464635 IL6STP40189 918 aaPredicted RBP15.12■□□□□ 0.01
USP54-209ENST00000464635 ALDH1L2Q3SY69 923 aa15.12■□□□□ 0.01
USP54-209ENST00000464635 A0A087WZG4 1122 aa15.11■□□□□ 0.01
USP54-209ENST00000464635 CAMTA2O94983 1202 aa15.11■□□□□ 0.01
USP54-209ENST00000464635 MS4A1P11836 297 aa15.11■□□□□ 0.01
USP54-209ENST00000464635 RARSP54136 660 aaKnown RBP15.11■□□□□ 0.01
USP54-209ENST00000464635 DALRD3Q5D0E6 543 aaKnown RBP15.11■□□□□ 0.01
USP54-209ENST00000464635 THUMPD2Q9BTF0 503 aaKnown RBP15.11■□□□□ 0.01
USP54-209ENST00000464635 MIS18AQ9NYP9 233 aa15.11■□□□□ 0.01
USP54-209ENST00000464635 TIAM2Q8IVF5 1701 aa15.1■□□□□ 0.01
USP54-209ENST00000464635 CHL1O00533 1208 aa15.1■□□□□ 0.01
USP54-209ENST00000464635 CCDC24Q8N4L8 307 aa15.1■□□□□ 0.01
USP54-209ENST00000464635 ARFGEF2Q9Y6D5 1785 aa15.1■□□□□ 0.01
USP54-209ENST00000464635 SNRPA1P09661 255 aaKnown RBP15.09■□□□□ 0.01
USP54-209ENST00000464635 NBPF26B4DH59 902 aa15.08■□□□□ 0
USP54-209ENST00000464635 TAF7Q15545 349 aaPredicted RBP15.08■□□□□ 0
USP54-209ENST00000464635 C9orf131Q5VYM1 1079 aa15.08■□□□□ 0
USP54-209ENST00000464635 NBPF10Q6P3W6 841 aaKnown RBP15.08■□□□□ 0
USP54-209ENST00000464635 DZIP3Q86Y13 1208 aaKnown RBP15.08■□□□□ 0
USP54-209ENST00000464635 NBPF15Q8N660 670 aa15.08■□□□□ 0
USP54-209ENST00000464635 NUP98P52948 1817 aa15.08■□□□□ 0
USP54-209ENST00000464635 KIF3CO14782 793 aa15.07■□□□□ 0
USP54-209ENST00000464635 RASSF7Q02833 373 aa15.07■□□□□ 0
USP54-209ENST00000464635 PRR5LQ6MZQ0 368 aa15.07■□□□□ 0
USP54-209ENST00000464635 C2CD5Q86YS7 1000 aa15.07■□□□□ 0
USP54-209ENST00000464635 CHMP4AQ9BY43 222 aa15.07■□□□□ 0
USP54-209ENST00000464635 FER1L6Q2WGJ9 1857 aa15.07■□□□□ 0
USP54-209ENST00000464635 SLX4Q8IY92 1834 aa15.06■□□□□ 0
USP54-209ENST00000464635 EXOSC9Q06265 439 aaKnown RBP15.06■□□□□ 0
USP54-209ENST00000464635 TNRC6CQ9HCJ0 1690 aaKnown RBP15.06■□□□□ 0
USP54-209ENST00000464635 PRELPP51888 382 aa15.05■□□□□ -0
USP54-209ENST00000464635 ARHGAP45Q92619 1136 aa15.05■□□□□ -0
USP54-209ENST00000464635 RNF181Q9P0P0 153 aa15.05■□□□□ -0
USP54-209ENST00000464635 KIF16BQ96L93 1317 aa15.04■□□□□ -0
USP54-209ENST00000464635 IPO8O15397 1037 aaKnown RBP15.04■□□□□ -0
USP54-209ENST00000464635 VAMP4O75379 141 aa15.04■□□□□ -0
USP54-209ENST00000464635 NPM2Q86SE8 214 aaKnown RBP15.04■□□□□ -0
USP54-209ENST00000464635 NMRK2Q9NPI5 230 aa15.04■□□□□ -0
USP54-209ENST00000464635 MBIPQ9NS73 344 aa15.04■□□□□ -0
USP54-209ENST00000464635 CACNA1FO60840 1977 aa15.04■□□□□ -0
USP54-209ENST00000464635 DICER1Q9UPY3 1922 aaKnown RBP15.04■□□□□ -0
USP54-209ENST00000464635 H0YIN7 160 aa15.03■□□□□ -0
USP54-209ENST00000464635 EIF4A1P60842 406 aaKnown RBP15.03■□□□□ -0
USP54-209ENST00000464635 TTLL6Q8N841 843 aa15.03■□□□□ -0
USP54-209ENST00000464635 CNBD1Q8NA66 436 aa15.03■□□□□ -0
USP54-209ENST00000464635 SETDB2Q96T68 719 aa15.03■□□□□ -0
USP54-209ENST00000464635 BCAR3O75815 825 aa15.02■□□□□ -0
USP54-209ENST00000464635 TSR2Q969E8 191 aaKnown RBP15.02■□□□□ -0
USP54-209ENST00000464635 BRIP1Q9BX63 1249 aa15.02■□□□□ -0
USP54-209ENST00000464635 NFKBIEO00221 500 aa15.01□□□□□ -0.01
USP54-209ENST00000464635 HLFQ16534 295 aa15.01□□□□□ -0.01
USP54-209ENST00000464635 ZKSCAN2Q63HK3 967 aa15.01□□□□□ -0.01
USP54-209ENST00000464635 ZNF622Q969S3 477 aaKnown RBP eCLIP15.01□□□□□ -0.01
USP54-209ENST00000464635 CEP350Q5VT06 3117 aa15.01□□□□□ -0.01
USP54-209ENST00000464635 NPHP1O15259 732 aa15□□□□□ -0.01
USP54-209ENST00000464635 PDE6BP35913 854 aa15□□□□□ -0.01
USP54-209ENST00000464635 ZNF219Q9P2Y4 722 aaPredicted RBP15□□□□□ -0.01
USP54-209ENST00000464635 ZNF652Q9Y2D9 606 aa15□□□□□ -0.01
USP54-209ENST00000464635 ANKRD36CQ5JPF3 1778 aa14.99□□□□□ -0.01
USP54-209ENST00000464635 FAM177BA6PVY3 158 aa14.99□□□□□ -0.01
USP54-209ENST00000464635 HOXB7P09629 217 aa14.99□□□□□ -0.01
USP54-209ENST00000464635 IRX6P78412 446 aaPredicted RBP14.99□□□□□ -0.01
USP54-209ENST00000464635 ST5P78524 1137 aa14.99□□□□□ -0.01
USP54-209ENST00000464635 TWISTNBQ3B726 338 aaPredicted RBP14.99□□□□□ -0.01
USP54-209ENST00000464635 CLEC4GQ6UXB4 293 aa14.99□□□□□ -0.01
USP54-209ENST00000464635 NBPF5PQ86XG9 351 aaPredicted RBP14.99□□□□□ -0.01
USP54-209ENST00000464635 SSH1Q8WYL5 1049 aa14.99□□□□□ -0.01
USP54-209ENST00000464635 CHMP4BQ9H444 224 aaKnown RBP14.99□□□□□ -0.01
USP54-209ENST00000464635 C21orf2O43822 256 aa14.98□□□□□ -0.01
USP54-209ENST00000464635 TTLL7Q6ZT98 887 aa14.98□□□□□ -0.01
USP54-209ENST00000464635 TSPYL4Q9UJ04 414 aa14.98□□□□□ -0.01
USP54-209ENST00000464635 NIP7Q9Y221 180 aaKnown RBP eCLIP14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms