RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 PROSER3Q2NL68 480 aa25.43■■□□□ 1.66
COL9A3-204ENST00000463487 CDCA7LQ96GN5 454 aa25.43■■□□□ 1.66
COL9A3-204ENST00000463487 ANXA1P04083 346 aa25.42■■□□□ 1.66
COL9A3-204ENST00000463487 VAMP4O75379 141 aa25.41■■□□□ 1.66
COL9A3-204ENST00000463487 AIMP1Q12904 312 aaKnown RBP25.41■■□□□ 1.66
COL9A3-204ENST00000463487 COPS6Q7L5N1 327 aa25.41■■□□□ 1.66
COL9A3-204ENST00000463487 XAGE3Q8WTP9 111 aa25.41■■□□□ 1.66
COL9A3-204ENST00000463487 BCL2L12Q9HB09 334 aa25.41■■□□□ 1.66
COL9A3-204ENST00000463487 TTLL7Q6ZT98 887 aa25.4■■□□□ 1.66
COL9A3-204ENST00000463487 LRP10Q7Z4F1 713 aa25.4■■□□□ 1.66
COL9A3-204ENST00000463487 ZNF428Q96B54 188 aa25.4■■□□□ 1.66
COL9A3-204ENST00000463487 SETDB2Q96T68 719 aa25.4■■□□□ 1.66
COL9A3-204ENST00000463487 DDX58O95786 925 aaKnown RBP25.39■■□□□ 1.66
COL9A3-204ENST00000463487 CT47B1P0C2W7 299 aaPredicted RBP25.39■■□□□ 1.66
COL9A3-204ENST00000463487 TRMT2AQ8IZ69 625 aaKnown RBP25.39■■□□□ 1.66
COL9A3-204ENST00000463487 ZBTB3Q9H5J0 574 aa25.39■■□□□ 1.66
COL9A3-204ENST00000463487 TM4SF1P30408 202 aa25.38■■□□□ 1.65
COL9A3-204ENST00000463487 NFIXQ14938 502 aa25.38■■□□□ 1.65
COL9A3-204ENST00000463487 HSP90AB3PQ58FF7 597 aa25.38■■□□□ 1.65
COL9A3-204ENST00000463487 BICDL1Q6ZP65 573 aa25.38■■□□□ 1.65
COL9A3-204ENST00000463487 CARMIL3Q8ND23 1372 aa25.38■■□□□ 1.65
COL9A3-204ENST00000463487 TBC1D9BQ66K14 1250 aa25.37■■□□□ 1.65
COL9A3-204ENST00000463487 NPHP1O15259 732 aa25.36■■□□□ 1.65
COL9A3-204ENST00000463487 SLC4A2P04920 1241 aa25.36■■□□□ 1.65
COL9A3-204ENST00000463487 GIGYF2Q6Y7W6 1299 aaKnown RBP25.36■■□□□ 1.65
COL9A3-204ENST00000463487 KLHL34Q8N239 644 aa25.36■■□□□ 1.65
COL9A3-204ENST00000463487 PLBD2Q8NHP8 589 aa25.36■■□□□ 1.65
COL9A3-204ENST00000463487 CACNA1FO60840 1977 aa25.36■■□□□ 1.65
COL9A3-204ENST00000463487 POLRMTO00411 1230 aaKnown RBP25.35■■□□□ 1.65
COL9A3-204ENST00000463487 ANKRD13DQ6ZTN6 518 aa25.35■■□□□ 1.65
COL9A3-204ENST00000463487 NIP7Q9Y221 180 aaKnown RBP eCLIP25.35■■□□□ 1.65
COL9A3-204ENST00000463487 HLFQ16534 295 aa25.34■■□□□ 1.65
COL9A3-204ENST00000463487 ATP10DQ9P241 1426 aa25.34■■□□□ 1.65
COL9A3-204ENST00000463487 TCERG1O14776 1098 aaKnown RBP25.33■■□□□ 1.65
COL9A3-204ENST00000463487 DDR1Q08345 913 aa25.33■■□□□ 1.65
COL9A3-204ENST00000463487 RIC3Q7Z5B4 369 aa25.33■■□□□ 1.65
COL9A3-204ENST00000463487 CD2APQ9Y5K6 639 aa25.33■■□□□ 1.65
COL9A3-204ENST00000463487 SERPINB2P05120 415 aa25.32■■□□□ 1.64
COL9A3-204ENST00000463487 FHDC1Q9C0D6 1143 aaPredicted RBP25.32■■□□□ 1.64
COL9A3-204ENST00000463487 PHAXQ9H814 394 aaKnown RBP25.32■■□□□ 1.64
COL9A3-204ENST00000463487 NUP98P52948 1817 aa25.32■■□□□ 1.64
COL9A3-204ENST00000463487 PARP10Q53GL7 1025 aa25.31■■□□□ 1.64
COL9A3-204ENST00000463487 NBPF5PQ86XG9 351 aaPredicted RBP25.3■■□□□ 1.64
COL9A3-204ENST00000463487 NYXQ9GZU5 481 aa25.3■■□□□ 1.64
COL9A3-204ENST00000463487 FLIIQ13045 1269 aa25.29■■□□□ 1.64
COL9A3-204ENST00000463487 TPTE2Q6XPS3 522 aa25.29■■□□□ 1.64
COL9A3-204ENST00000463487 CNBD1Q8NA66 436 aa25.29■■□□□ 1.64
COL9A3-204ENST00000463487 ST5P78524 1137 aa25.28■■□□□ 1.64
COL9A3-204ENST00000463487 FKBP5Q13451 457 aaPredicted RBP25.28■■□□□ 1.64
COL9A3-204ENST00000463487 TCIRG1Q13488 830 aa25.28■■□□□ 1.64
COL9A3-204ENST00000463487 ALDH1L2Q3SY69 923 aa25.28■■□□□ 1.64
COL9A3-204ENST00000463487 PPP1R42Q7Z4L9 355 aa25.28■■□□□ 1.64
COL9A3-204ENST00000463487 SYT17Q9BSW7 474 aa25.28■■□□□ 1.64
COL9A3-204ENST00000463487 C10orf71Q711Q0 1435 aa25.28■■□□□ 1.64
COL9A3-204ENST00000463487 GPTP24298 496 aa25.27■■□□□ 1.64
COL9A3-204ENST00000463487 GTF2E1P29083 439 aaPredicted RBP25.27■■□□□ 1.64
COL9A3-204ENST00000463487 KSR2Q6VAB6 950 aa25.27■■□□□ 1.64
COL9A3-204ENST00000463487 NRXN2Q9P2S2 1712 aa25.26■■□□□ 1.63
COL9A3-204ENST00000463487 ANKRD36CQ5JPF3 1778 aa25.26■■□□□ 1.63
COL9A3-204ENST00000463487 NEXNQ0ZGT2 675 aa25.26■■□□□ 1.63
COL9A3-204ENST00000463487 ZNF34Q8IZ26 560 aa25.26■■□□□ 1.63
COL9A3-204ENST00000463487 IBTKQ9P2D0 1353 aaPredicted RBP25.26■■□□□ 1.63
COL9A3-204ENST00000463487 ARFGEF2Q9Y6D5 1785 aa25.26■■□□□ 1.63
COL9A3-204ENST00000463487 SMC4Q9NTJ3 1288 aa25.25■■□□□ 1.63
COL9A3-204ENST00000463487 AFDNP55196 1824 aaKnown RBP25.25■■□□□ 1.63
COL9A3-204ENST00000463487 RNF123Q5XPI4 1314 aa25.24■■□□□ 1.63
COL9A3-204ENST00000463487 PI4KAP2A4QPH2 592 aa25.24■■□□□ 1.63
COL9A3-204ENST00000463487 TGFB2P61812 414 aa25.24■■□□□ 1.63
COL9A3-204ENST00000463487 G2E3Q7L622 706 aa25.24■■□□□ 1.63
COL9A3-204ENST00000463487 PI4KAP1Q8N8J0 262 aa25.24■■□□□ 1.63
COL9A3-204ENST00000463487 MAP3K2Q9Y2U5 619 aa25.24■■□□□ 1.63
COL9A3-204ENST00000463487 SRCAPQ6ZRS2 3230 aa25.24■■□□□ 1.63
COL9A3-204ENST00000463487 PRR5LQ6MZQ0 368 aa25.23■■□□□ 1.63
COL9A3-204ENST00000463487 SSH1Q8WYL5 1049 aa25.23■■□□□ 1.63
COL9A3-204ENST00000463487 PDZRN3Q9UPQ7 1066 aa25.23■■□□□ 1.63
COL9A3-204ENST00000463487 KIF13BQ9NQT8 1826 aa25.23■■□□□ 1.63
COL9A3-204ENST00000463487 UBN2Q6ZU65 1347 aa25.22■■□□□ 1.63
COL9A3-204ENST00000463487 DCAF8L1A6NGE4 600 aa25.22■■□□□ 1.63
COL9A3-204ENST00000463487 FAM177BA6PVY3 158 aa25.22■■□□□ 1.63
COL9A3-204ENST00000463487 METTL22Q9BUU2 404 aaPredicted RBP25.22■■□□□ 1.63
COL9A3-204ENST00000463487 UTP14AQ9BVJ6 771 aaKnown RBP25.22■■□□□ 1.63
COL9A3-204ENST00000463487 PTPRCP08575 1304 aa25.21■■□□□ 1.63
COL9A3-204ENST00000463487 PDE6BP35913 854 aa25.21■■□□□ 1.63
COL9A3-204ENST00000463487 YTHDC1Q96MU7 727 aaKnown RBP25.21■■□□□ 1.63
COL9A3-204ENST00000463487 BRIP1Q9BX63 1249 aa25.21■■□□□ 1.63
COL9A3-204ENST00000463487 TRIM28Q13263 835 aaKnown RBP25.2■■□□□ 1.62
COL9A3-204ENST00000463487 NLRP10Q86W26 655 aa25.2■■□□□ 1.62
COL9A3-204ENST00000463487 MRPL50Q8N5N7 158 aaKnown RBP25.2■■□□□ 1.62
COL9A3-204ENST00000463487 MYD88Q99836 296 aa25.2■■□□□ 1.62
COL9A3-204ENST00000463487 BCL2L13Q9BXK5 485 aa25.2■■□□□ 1.62
COL9A3-204ENST00000463487 ADCY9O60503 1353 aa25.19■■□□□ 1.62
COL9A3-204ENST00000463487 SUSD4Q5VX71 490 aa25.19■■□□□ 1.62
COL9A3-204ENST00000463487 CCDC191Q8NCU4 936 aa25.19■■□□□ 1.62
COL9A3-204ENST00000463487 DNAAF4Q8WXU2 420 aa25.19■■□□□ 1.62
COL9A3-204ENST00000463487 ISCA1Q9BUE6 129 aa25.19■■□□□ 1.62
COL9A3-204ENST00000463487 KIF16BQ96L93 1317 aa25.18■■□□□ 1.62
COL9A3-204ENST00000463487 ATP5J2-PTCD1G3V325 749 aa25.18■■□□□ 1.62
COL9A3-204ENST00000463487 NLGN2Q8NFZ4 835 aa25.18■■□□□ 1.62
COL9A3-204ENST00000463487 TRMT112Q9UI30 125 aaKnown RBP25.18■■□□□ 1.62
COL9A3-204ENST00000463487 NTSR2O95665 410 aa25.17■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms