RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 IFNL2Q8IZJ0 200 aa13.84□□□□□ -0.19
NPHP4-204ENST00000460696 USP44Q9H0E7 712 aa13.84□□□□□ -0.19
NPHP4-204ENST00000460696 PLEKHG1Q9ULL1 1385 aa13.84□□□□□ -0.19
NPHP4-204ENST00000460696 G3V3G9 751 aa13.84□□□□□ -0.19
NPHP4-204ENST00000460696 CPA1P15085 419 aa13.84□□□□□ -0.19
NPHP4-204ENST00000460696 DCAF8Q5TAQ9 597 aa13.84□□□□□ -0.19
NPHP4-204ENST00000460696 ANKRD13DQ6ZTN6 518 aa13.84□□□□□ -0.19
NPHP4-204ENST00000460696 ZSCAN31Q96LW9 406 aaPredicted RBP13.84□□□□□ -0.19
NPHP4-204ENST00000460696 TMX4Q9H1E5 349 aaPredicted RBP13.84□□□□□ -0.19
NPHP4-204ENST00000460696 CCDC39Q9UFE4 941 aa13.84□□□□□ -0.19
NPHP4-204ENST00000460696 CCDC57Q2TAC2 916 aa13.84□□□□□ -0.19
NPHP4-204ENST00000460696 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.84□□□□□ -0.19
NPHP4-204ENST00000460696 CEP126Q9P2H0 1117 aa13.84□□□□□ -0.19
NPHP4-204ENST00000460696 PNPLA6Q8IY17 1366 aa13.84□□□□□ -0.19
NPHP4-204ENST00000460696 ZSCAN23Q3MJ62 389 aa13.83□□□□□ -0.19
NPHP4-204ENST00000460696 NECAB1Q8N987 351 aa13.83□□□□□ -0.19
NPHP4-204ENST00000460696 EVI5LQ96CN4 794 aa13.83□□□□□ -0.19
NPHP4-204ENST00000460696 NLRP1Q9C000 1473 aa13.83□□□□□ -0.2
NPHP4-204ENST00000460696 ANKRD1Q15327 319 aa13.83□□□□□ -0.2
NPHP4-204ENST00000460696 CPLX2Q6PUV4 134 aaKnown RBP13.83□□□□□ -0.2
NPHP4-204ENST00000460696 FMNL2Q96PY5 1086 aa13.83□□□□□ -0.2
NPHP4-204ENST00000460696 ZNF219Q9P2Y4 722 aaPredicted RBP13.83□□□□□ -0.2
NPHP4-204ENST00000460696 CCDC73Q6ZRK6 1079 aa13.83□□□□□ -0.2
NPHP4-204ENST00000460696 SPC24Q8NBT2 197 aa13.83□□□□□ -0.2
NPHP4-204ENST00000460696 TMOD3Q9NYL9 352 aa13.83□□□□□ -0.2
NPHP4-204ENST00000460696 RIMS1Q86UR5 1692 aaKnown RBP13.83□□□□□ -0.2
NPHP4-204ENST00000460696 RNMTO43148 476 aaKnown RBP13.82□□□□□ -0.2
NPHP4-204ENST00000460696 PPFIA3O75145 1194 aa13.82□□□□□ -0.2
NPHP4-204ENST00000460696 DIP2CQ9Y2E4 1556 aa13.82□□□□□ -0.2
NPHP4-204ENST00000460696 RXRBP28702 533 aa13.82□□□□□ -0.2
NPHP4-204ENST00000460696 CCDC158Q5M9N0 1113 aa13.82□□□□□ -0.2
NPHP4-204ENST00000460696 NFXL1Q6ZNB6 911 aa13.82□□□□□ -0.2
NPHP4-204ENST00000460696 LINS1Q8NG48 757 aa13.82□□□□□ -0.2
NPHP4-204ENST00000460696 USP6P35125 1406 aa13.82□□□□□ -0.2
NPHP4-204ENST00000460696 DCAF8L1A6NGE4 600 aa13.82□□□□□ -0.2
NPHP4-204ENST00000460696 STX6O43752 255 aa13.82□□□□□ -0.2
NPHP4-204ENST00000460696 TTC39AQ5SRH9 613 aa13.82□□□□□ -0.2
NPHP4-204ENST00000460696 CNNM1Q9NRU3 951 aa13.82□□□□□ -0.2
NPHP4-204ENST00000460696 ARHGEF10O15013 1369 aa13.82□□□□□ -0.2
NPHP4-204ENST00000460696 KIF6Q6ZMV9 814 aa13.81□□□□□ -0.2
NPHP4-204ENST00000460696 KLHDC4Q8TBB5 520 aa13.81□□□□□ -0.2
NPHP4-204ENST00000460696 ALDH1L1O75891 902 aa13.81□□□□□ -0.2
NPHP4-204ENST00000460696 GJB2P29033 226 aa13.81□□□□□ -0.2
NPHP4-204ENST00000460696 ANAPC15P60006 121 aa13.81□□□□□ -0.2
NPHP4-204ENST00000460696 PKP1Q13835 747 aa13.81□□□□□ -0.2
NPHP4-204ENST00000460696 SDF4Q9BRK5 362 aa13.81□□□□□ -0.2
NPHP4-204ENST00000460696 ADGRB1O14514 1584 aa13.81□□□□□ -0.2
NPHP4-204ENST00000460696 ZSCAN30Q86W11 494 aa13.81□□□□□ -0.2
NPHP4-204ENST00000460696 TFIP11Q9UBB9 837 aaKnown RBP13.81□□□□□ -0.2
NPHP4-204ENST00000460696 NEXMIFQ5QGS0 1516 aa13.81□□□□□ -0.2
NPHP4-204ENST00000460696 SNRPA1P09661 255 aaKnown RBP13.81□□□□□ -0.2
NPHP4-204ENST00000460696 EIF4A1P60842 406 aaKnown RBP13.81□□□□□ -0.2
NPHP4-204ENST00000460696 CAMK4Q16566 473 aa13.81□□□□□ -0.2
NPHP4-204ENST00000460696 CHAMP1Q96JM3 812 aa13.81□□□□□ -0.2
NPHP4-204ENST00000460696 CDK12Q9NYV4 1490 aaPredicted RBP13.8□□□□□ -0.2
NPHP4-204ENST00000460696 NRXN1Q9ULB1 1477 aa13.8□□□□□ -0.2
NPHP4-204ENST00000460696 DDX46Q7L014 1031 aaKnown RBP13.8□□□□□ -0.2
NPHP4-204ENST00000460696 CHMP4CQ96CF2 233 aa13.8□□□□□ -0.2
NPHP4-204ENST00000460696 SPATA32Q96LK8 384 aa13.8□□□□□ -0.2
NPHP4-204ENST00000460696 PRIM1P49642 420 aaKnown RBP13.8□□□□□ -0.2
NPHP4-204ENST00000460696 CAMSAP1Q5T5Y3 1602 aa13.8□□□□□ -0.2
NPHP4-204ENST00000460696 KCNQ4P56696 695 aa13.8□□□□□ -0.2
NPHP4-204ENST00000460696 SYNE3Q6ZMZ3 975 aa13.8□□□□□ -0.2
NPHP4-204ENST00000460696 TRIM5Q9C035 493 aa13.8□□□□□ -0.2
NPHP4-204ENST00000460696 RBM8AQ9Y5S9 174 aaKnown RBP13.8□□□□□ -0.2
NPHP4-204ENST00000460696 LRRC7Q96NW7 1537 aa13.79□□□□□ -0.2
NPHP4-204ENST00000460696 LETM1O95202 739 aaPredicted RBP13.79□□□□□ -0.2
NPHP4-204ENST00000460696 TPM4P67936 248 aa13.79□□□□□ -0.2
NPHP4-204ENST00000460696 STK11IPQ8N1F8 1099 aa13.79□□□□□ -0.2
NPHP4-204ENST00000460696 SNRKQ9NRH2 765 aa13.79□□□□□ -0.2
NPHP4-204ENST00000460696 KIAA1210Q9ULL0 1709 aa13.79□□□□□ -0.2
NPHP4-204ENST00000460696 AFF2P51816 1311 aa13.79□□□□□ -0.2
NPHP4-204ENST00000460696 ZNF592Q92610 1267 aa13.79□□□□□ -0.2
NPHP4-204ENST00000460696 TNMDQ9H2S6 317 aa13.79□□□□□ -0.2
NPHP4-204ENST00000460696 IGSF1Q8N6C5 1336 aa13.79□□□□□ -0.2
NPHP4-204ENST00000460696 GOLIM4O00461 696 aa13.79□□□□□ -0.2
NPHP4-204ENST00000460696 AK2P54819 239 aa13.79□□□□□ -0.2
NPHP4-204ENST00000460696 KRT32Q14532 448 aa13.79□□□□□ -0.2
NPHP4-204ENST00000460696 ILDR1Q86SU0 546 aaPredicted RBP13.79□□□□□ -0.2
NPHP4-204ENST00000460696 BICC1Q9H694 974 aaKnown RBP13.79□□□□□ -0.2
NPHP4-204ENST00000460696 SH2B1Q9NRF2 756 aaPredicted RBP13.79□□□□□ -0.2
NPHP4-204ENST00000460696 PALD1Q9ULE6 856 aa13.79□□□□□ -0.2
NPHP4-204ENST00000460696 ARHGEF40Q8TER5 1519 aa13.78□□□□□ -0.2
NPHP4-204ENST00000460696 CCDC192P0DO97 292 aa13.78□□□□□ -0.2
NPHP4-204ENST00000460696 TRIM29Q14134 588 aa13.78□□□□□ -0.2
NPHP4-204ENST00000460696 ZCRB1Q8TBF4 217 aaKnown RBP13.78□□□□□ -0.2
NPHP4-204ENST00000460696 KIF24Q5T7B8 1368 aa13.78□□□□□ -0.2
NPHP4-204ENST00000460696 APBA3O96018 575 aa13.78□□□□□ -0.2
NPHP4-204ENST00000460696 IFIT1P09914 478 aaKnown RBP13.78□□□□□ -0.2
NPHP4-204ENST00000460696 CNPY2Q9Y2B0 182 aa13.78□□□□□ -0.2
NPHP4-204ENST00000460696 MROH2AA6NES4 1674 aa13.78□□□□□ -0.2
NPHP4-204ENST00000460696 LMBR1LQ6UX01 489 aa13.78□□□□□ -0.2
NPHP4-204ENST00000460696 CREBRFQ8IUR6 639 aa13.78□□□□□ -0.2
NPHP4-204ENST00000460696 LRRC2Q9BYS8 371 aa13.78□□□□□ -0.2
NPHP4-204ENST00000460696 VWDEQ8N2E2 1590 aa13.77□□□□□ -0.2
NPHP4-204ENST00000460696 USP48Q86UV5 1035 aa13.77□□□□□ -0.2
NPHP4-204ENST00000460696 UNC5CLQ8IV45 518 aa13.77□□□□□ -0.2
NPHP4-204ENST00000460696 DDX21Q9NR30 783 aaKnown RBP eCLIP13.77□□□□□ -0.2
NPHP4-204ENST00000460696 USP25Q9UHP3 1055 aa13.77□□□□□ -0.2
NPHP4-204ENST00000460696 NMIQ13287 307 aaPredicted RBP13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 310.3 ms