RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 NMRK2Q9NPI5 230 aa30.09■■■□□ 2.41
PTPN4-207ENST00000460162 FER1L6Q2WGJ9 1857 aa30.08■■■□□ 2.41
PTPN4-207ENST00000460162 CCDC88AQ3V6T2 1871 aa30.08■■■□□ 2.41
PTPN4-207ENST00000460162 TOMM70O94826 608 aa30.07■■■□□ 2.4
PTPN4-207ENST00000460162 LMNB1P20700 586 aa30.07■■■□□ 2.4
PTPN4-207ENST00000460162 CCDC24Q8N4L8 307 aa30.07■■■□□ 2.4
PTPN4-207ENST00000460162 MYBBP1AQ9BQG0 1328 aaKnown RBP30.06■■■□□ 2.4
PTPN4-207ENST00000460162 ZNF622Q969S3 477 aaKnown RBP eCLIP30.06■■■□□ 2.4
PTPN4-207ENST00000460162 THUMPD2Q9BTF0 503 aaKnown RBP30.06■■■□□ 2.4
PTPN4-207ENST00000460162 EIF4A1P60842 406 aaKnown RBP30.05■■■□□ 2.4
PTPN4-207ENST00000460162 NBPF5PQ86XG9 351 aaPredicted RBP30.05■■■□□ 2.4
PTPN4-207ENST00000460162 DDX10Q13206 875 aaKnown RBP30.04■■■□□ 2.4
PTPN4-207ENST00000460162 DICER1Q9UPY3 1922 aaKnown RBP30.03■■■□□ 2.4
PTPN4-207ENST00000460162 NFKBIEO00221 500 aa30.03■■■□□ 2.4
PTPN4-207ENST00000460162 STYK1Q6J9G0 422 aa30.03■■■□□ 2.4
PTPN4-207ENST00000460162 NUP98P52948 1817 aa30.03■■■□□ 2.4
PTPN4-207ENST00000460162 SLX4Q8IY92 1834 aa30.02■■■□□ 2.4
PTPN4-207ENST00000460162 SRGNP10124 158 aa30.01■■■□□ 2.39
PTPN4-207ENST00000460162 CNKSR1Q969H4 720 aa30.01■■■□□ 2.39
PTPN4-207ENST00000460162 NIP7Q9Y221 180 aaKnown RBP eCLIP30.01■■■□□ 2.39
PTPN4-207ENST00000460162 PRELPP51888 382 aa30■■■□□ 2.39
PTPN4-207ENST00000460162 MASTLQ96GX5 879 aa30■■■□□ 2.39
PTPN4-207ENST00000460162 LMOD3Q0VAK6 560 aa29.99■■■□□ 2.39
PTPN4-207ENST00000460162 C16orf71Q8IYS4 520 aaPredicted RBP29.99■■■□□ 2.39
PTPN4-207ENST00000460162 RBM46Q8TBY0 533 aaKnown RBP29.99■■■□□ 2.39
PTPN4-207ENST00000460162 ERBB4Q15303 1308 aa29.98■■■□□ 2.39
PTPN4-207ENST00000460162 C21orf2O43822 256 aa29.98■■■□□ 2.39
PTPN4-207ENST00000460162 TPTE2Q6XPS3 522 aa29.98■■■□□ 2.39
PTPN4-207ENST00000460162 LTBP3Q9NS15 1303 aa29.97■■■□□ 2.39
PTPN4-207ENST00000460162 RIPK4P57078 832 aa29.97■■■□□ 2.39
PTPN4-207ENST00000460162 PRPF40BQ6NWY9 871 aaKnown RBP29.97■■■□□ 2.39
PTPN4-207ENST00000460162 TSPYL4Q9UJ04 414 aa29.97■■■□□ 2.39
PTPN4-207ENST00000460162 ERVV-1B6SEH8 477 aa29.96■■■□□ 2.39
PTPN4-207ENST00000460162 HLFQ16534 295 aa29.96■■■□□ 2.39
PTPN4-207ENST00000460162 SOGA3Q5TF21 947 aa29.96■■■□□ 2.39
PTPN4-207ENST00000460162 BABAM1Q9NWV8 329 aa29.96■■■□□ 2.39
PTPN4-207ENST00000460162 MAP3K15Q6ZN16 1313 aa29.96■■■□□ 2.39
PTPN4-207ENST00000460162 TMPOP42166 694 aaKnown RBP29.95■■■□□ 2.39
PTPN4-207ENST00000460162 KLRG2A4D1S0 409 aaPredicted RBP29.94■■■□□ 2.38
PTPN4-207ENST00000460162 KIF6Q6ZMV9 814 aa29.94■■■□□ 2.38
PTPN4-207ENST00000460162 ZNF219Q9P2Y4 722 aaPredicted RBP29.94■■■□□ 2.38
PTPN4-207ENST00000460162 WDR90Q96KV7 1748 aa29.93■■■□□ 2.38
PTPN4-207ENST00000460162 IBTKQ9P2D0 1353 aaPredicted RBP29.93■■■□□ 2.38
PTPN4-207ENST00000460162 GLTPD2A6NH11 291 aa29.93■■■□□ 2.38
PTPN4-207ENST00000460162 NPR1P16066 1061 aa29.93■■■□□ 2.38
PTPN4-207ENST00000460162 APLP1P51693 650 aa29.93■■■□□ 2.38
PTPN4-207ENST00000460162 TAOK3Q9H2K8 898 aa29.93■■■□□ 2.38
PTPN4-207ENST00000460162 RRAGCQ9HB90 399 aa29.93■■■□□ 2.38
PTPN4-207ENST00000460162 RRP7AQ9Y3A4 280 aaKnown RBP29.93■■■□□ 2.38
PTPN4-207ENST00000460162 NGEFQ8N5V2 710 aa29.92■■■□□ 2.38
PTPN4-207ENST00000460162 RIC1Q4ADV7 1423 aa29.91■■■□□ 2.38
PTPN4-207ENST00000460162 MYL6BP14649 208 aa29.91■■■□□ 2.38
PTPN4-207ENST00000460162 FSTL1Q12841 308 aa29.91■■■□□ 2.38
PTPN4-207ENST00000460162 WDR43Q15061 677 aaKnown RBP eCLIP29.9■■■□□ 2.38
PTPN4-207ENST00000460162 TTLL7Q6ZT98 887 aa29.9■■■□□ 2.38
PTPN4-207ENST00000460162 NYXQ9GZU5 481 aa29.9■■■□□ 2.38
PTPN4-207ENST00000460162 FAM177BA6PVY3 158 aa29.89■■■□□ 2.38
PTPN4-207ENST00000460162 ABCC12Q96J65 1359 aa29.89■■■□□ 2.37
PTPN4-207ENST00000460162 GTF2E1P29083 439 aaPredicted RBP29.88■■■□□ 2.37
PTPN4-207ENST00000460162 ERFEQ4G0M1 354 aa29.87■■■□□ 2.37
PTPN4-207ENST00000460162 CCDC93Q567U6 631 aa29.87■■■□□ 2.37
PTPN4-207ENST00000460162 CCDC146Q8IYE0 955 aa29.87■■■□□ 2.37
PTPN4-207ENST00000460162 RUNDC1Q96C34 613 aa29.87■■■□□ 2.37
PTPN4-207ENST00000460162 ZBTB3Q9H5J0 574 aa29.87■■■□□ 2.37
PTPN4-207ENST00000460162 ANKRD36CQ5JPF3 1778 aa29.87■■■□□ 2.37
PTPN4-207ENST00000460162 C7orf43Q8WVR3 580 aa29.86■■■□□ 2.37
PTPN4-207ENST00000460162 VEGFAP15692 232 aaPredicted RBP29.85■■■□□ 2.37
PTPN4-207ENST00000460162 DPY19L2Q6NUT2 758 aa29.85■■■□□ 2.37
PTPN4-207ENST00000460162 UBN2Q6ZU65 1347 aa29.85■■■□□ 2.37
PTPN4-207ENST00000460162 CRY2Q49AN0 593 aa29.84■■■□□ 2.37
PTPN4-207ENST00000460162 LRP10Q7Z4F1 713 aa29.84■■■□□ 2.37
PTPN4-207ENST00000460162 SMC1BQ8NDV3 1235 aa29.84■■■□□ 2.37
PTPN4-207ENST00000460162 PRKRIP1Q9H875 184 aaPredicted RBP29.84■■■□□ 2.37
PTPN4-207ENST00000460162 GIGYF2Q6Y7W6 1299 aaKnown RBP29.83■■■□□ 2.37
PTPN4-207ENST00000460162 ALDH1B1P30837 517 aa29.82■■■□□ 2.36
PTPN4-207ENST00000460162 PDIA6Q15084 440 aa29.82■■■□□ 2.36
PTPN4-207ENST00000460162 NEUROD2Q15784 382 aa29.82■■■□□ 2.36
PTPN4-207ENST00000460162 EIF2S2P20042 333 aaKnown RBP29.81■■■□□ 2.36
PTPN4-207ENST00000460162 GPTP24298 496 aa29.81■■■□□ 2.36
PTPN4-207ENST00000460162 NUTM1Q86Y26 1132 aa29.81■■■□□ 2.36
PTPN4-207ENST00000460162 ZNF34Q8IZ26 560 aa29.81■■■□□ 2.36
PTPN4-207ENST00000460162 ADAMTS8Q9UP79 889 aa29.8■■■□□ 2.36
PTPN4-207ENST00000460162 TRIM35Q9UPQ4 493 aa29.8■■■□□ 2.36
PTPN4-207ENST00000460162 CHL1O00533 1208 aa29.79■■■□□ 2.36
PTPN4-207ENST00000460162 FKBP4Q02790 459 aaKnown RBP eCLIP29.79■■■□□ 2.36
PTPN4-207ENST00000460162 PARP10Q53GL7 1025 aa29.79■■■□□ 2.36
PTPN4-207ENST00000460162 NTSR2O95665 410 aa29.78■■■□□ 2.36
PTPN4-207ENST00000460162 SUSD4Q5VX71 490 aa29.78■■■□□ 2.36
PTPN4-207ENST00000460162 SNED1Q8TER0 1413 aa29.78■■■□□ 2.36
PTPN4-207ENST00000460162 PROSER3Q2NL68 480 aa29.77■■■□□ 2.36
PTPN4-207ENST00000460162 RTKN2Q8IZC4 609 aa29.77■■■□□ 2.36
PTPN4-207ENST00000460162 PPP1R42Q7Z4L9 355 aa29.76■■■□□ 2.35
PTPN4-207ENST00000460162 POTECB2RU33 542 aa29.75■■■□□ 2.35
PTPN4-207ENST00000460162 RPGRQ92834 1020 aaKnown RBP29.75■■■□□ 2.35
PTPN4-207ENST00000460162 RNF123Q5XPI4 1314 aa29.74■■■□□ 2.35
PTPN4-207ENST00000460162 SCN4AP35499 1836 aa29.74■■■□□ 2.35
PTPN4-207ENST00000460162 ANXA1P04083 346 aa29.74■■■□□ 2.35
PTPN4-207ENST00000460162 HOXA10P31260 410 aaPredicted RBP29.74■■■□□ 2.35
PTPN4-207ENST00000460162 DNAJC5GQ8N7S2 189 aa29.74■■■□□ 2.35
PTPN4-207ENST00000460162 HOXB7P09629 217 aa29.73■■■□□ 2.35
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms