RNA–Protein interactions for RNA: ENST00000459979.2

HOXD3-204, Transcript of homeobox D3, humanhuman

TSL 1 (best)

Gene HOXD3, Length 1,055 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-204ENST00000459979 CCDC24Q8N4L8 307 aa24.31■■□□□ 1.48
HOXD3-204ENST00000459979 A1BGP04217 495 aa24.3■■□□□ 1.48
HOXD3-204ENST00000459979 EIF4A1P60842 406 aaKnown RBP24.3■■□□□ 1.48
HOXD3-204ENST00000459979 TTLL6Q8N841 843 aa24.3■■□□□ 1.48
HOXD3-204ENST00000459979 TBC1D2BQ9UPU7 963 aa24.3■■□□□ 1.48
HOXD3-204ENST00000459979 PRAMEF22A3QJZ6 481 aa24.29■■□□□ 1.48
HOXD3-204ENST00000459979 CCDC184Q52MB2 194 aa24.29■■□□□ 1.48
HOXD3-204ENST00000459979 TRIM35Q9UPQ4 493 aa24.29■■□□□ 1.48
HOXD3-204ENST00000459979 RRP7AQ9Y3A4 280 aaKnown RBP24.29■■□□□ 1.48
HOXD3-204ENST00000459979 H0YIN7 160 aa24.28■■□□□ 1.48
HOXD3-204ENST00000459979 BCORQ6W2J9 1755 aa24.27■■□□□ 1.48
HOXD3-204ENST00000459979 LMNB1P20700 586 aa24.27■■□□□ 1.48
HOXD3-204ENST00000459979 LAMB4A4D0S4 1761 aa24.26■■□□□ 1.47
HOXD3-204ENST00000459979 NEUROD2Q15784 382 aa24.26■■□□□ 1.47
HOXD3-204ENST00000459979 ZNF219Q9P2Y4 722 aaPredicted RBP24.26■■□□□ 1.47
HOXD3-204ENST00000459979 NFKBIEO00221 500 aa24.25■■□□□ 1.47
HOXD3-204ENST00000459979 FSTL1Q12841 308 aa24.25■■□□□ 1.47
HOXD3-204ENST00000459979 ZNF622Q969S3 477 aaKnown RBP eCLIP24.25■■□□□ 1.47
HOXD3-204ENST00000459979 TSPYL4Q9UJ04 414 aa24.25■■□□□ 1.47
HOXD3-204ENST00000459979 FER1L6Q2WGJ9 1857 aa24.24■■□□□ 1.47
HOXD3-204ENST00000459979 DICER1Q9UPY3 1922 aaKnown RBP24.24■■□□□ 1.47
HOXD3-204ENST00000459979 PIP4K2AP48426 406 aaPredicted RBP24.24■■□□□ 1.47
HOXD3-204ENST00000459979 PRR5LQ6MZQ0 368 aa24.24■■□□□ 1.47
HOXD3-204ENST00000459979 NBPF26B4DH59 902 aa24.23■■□□□ 1.47
HOXD3-204ENST00000459979 CHL1O00533 1208 aa24.23■■□□□ 1.47
HOXD3-204ENST00000459979 APAF1O14727 1248 aa24.23■■□□□ 1.47
HOXD3-204ENST00000459979 NBPF10Q6P3W6 841 aaKnown RBP24.23■■□□□ 1.47
HOXD3-204ENST00000459979 NPM2Q86SE8 214 aaKnown RBP24.23■■□□□ 1.47
HOXD3-204ENST00000459979 NBPF15Q8N660 670 aa24.23■■□□□ 1.47
HOXD3-204ENST00000459979 SLX4Q8IY92 1834 aa24.22■■□□□ 1.47
HOXD3-204ENST00000459979 ZC3H4Q9UPT8 1303 aaKnown RBP24.22■■□□□ 1.47
HOXD3-204ENST00000459979 GLTPD2A6NH11 291 aa24.21■■□□□ 1.47
HOXD3-204ENST00000459979 RGL2O15211 777 aa24.21■■□□□ 1.47
HOXD3-204ENST00000459979 C21orf2O43822 256 aa24.21■■□□□ 1.47
HOXD3-204ENST00000459979 CAMTA2O94983 1202 aa24.21■■□□□ 1.47
HOXD3-204ENST00000459979 SMC1BQ8NDV3 1235 aa24.2■■□□□ 1.46
HOXD3-204ENST00000459979 KLRG1Q96E93 195 aa24.2■■□□□ 1.46
HOXD3-204ENST00000459979 BRIP1Q9BX63 1249 aa24.2■■□□□ 1.46
HOXD3-204ENST00000459979 MRS2Q9HD23 443 aa24.2■■□□□ 1.46
HOXD3-204ENST00000459979 PDE6BP35913 854 aa24.19■■□□□ 1.46
HOXD3-204ENST00000459979 DZIP3Q86Y13 1208 aaKnown RBP24.19■■□□□ 1.46
HOXD3-204ENST00000459979 ARFGEF2Q9Y6D5 1785 aa24.19■■□□□ 1.46
HOXD3-204ENST00000459979 ERBB4Q15303 1308 aa24.18■■□□□ 1.46
HOXD3-204ENST00000459979 CLEC4GQ6UXB4 293 aa24.18■■□□□ 1.46
HOXD3-204ENST00000459979 SETDB2Q96T68 719 aa24.18■■□□□ 1.46
HOXD3-204ENST00000459979 NPHP1O15259 732 aa24.17■■□□□ 1.46
HOXD3-204ENST00000459979 VEGFAP15692 232 aaPredicted RBP24.17■■□□□ 1.46
HOXD3-204ENST00000459979 CNBD1Q8NA66 436 aa24.17■■□□□ 1.46
HOXD3-204ENST00000459979 CFAP44Q96MT7 982 aa24.17■■□□□ 1.46
HOXD3-204ENST00000459979 NCBP3Q53F19 620 aaKnown RBP24.16■■□□□ 1.46
HOXD3-204ENST00000459979 ZNF853P0CG23 659 aa24.15■■□□□ 1.46
HOXD3-204ENST00000459979 CALD1Q05682 793 aaKnown RBP24.15■■□□□ 1.46
HOXD3-204ENST00000459979 PDZRN3Q9UPQ7 1066 aa24.14■■□□□ 1.45
HOXD3-204ENST00000459979 POTECB2RU33 542 aa24.13■■□□□ 1.45
HOXD3-204ENST00000459979 ST5P78524 1137 aa24.13■■□□□ 1.45
HOXD3-204ENST00000459979 CCDC27Q2M243 656 aa24.13■■□□□ 1.45
HOXD3-204ENST00000459979 ERFEQ4G0M1 354 aa24.13■■□□□ 1.45
HOXD3-204ENST00000459979 JMYQ8N9B5 988 aa24.12■■□□□ 1.45
HOXD3-204ENST00000459979 IFT57Q9NWB7 429 aa24.12■■□□□ 1.45
HOXD3-204ENST00000459979 ZNF652Q9Y2D9 606 aa24.12■■□□□ 1.45
HOXD3-204ENST00000459979 HOXB7P09629 217 aa24.11■■□□□ 1.45
HOXD3-204ENST00000459979 SRGNP10124 158 aa24.11■■□□□ 1.45
HOXD3-204ENST00000459979 PRPF40BQ6NWY9 871 aaKnown RBP24.11■■□□□ 1.45
HOXD3-204ENST00000459979 LAS1LQ9Y4W2 734 aaKnown RBP24.11■■□□□ 1.45
HOXD3-204ENST00000459979 ERVV-1B6SEH8 477 aa24.1■■□□□ 1.45
HOXD3-204ENST00000459979 PDIA6Q15084 440 aa24.1■■□□□ 1.45
HOXD3-204ENST00000459979 STYK1Q6J9G0 422 aa24.1■■□□□ 1.45
HOXD3-204ENST00000459979 DPY19L2Q6NUT2 758 aa24.1■■□□□ 1.45
HOXD3-204ENST00000459979 CNKSR1Q969H4 720 aa24.1■■□□□ 1.45
HOXD3-204ENST00000459979 TAOK3Q9H2K8 898 aa24.1■■□□□ 1.45
HOXD3-204ENST00000459979 GNAI1P63096 354 aa24.09■■□□□ 1.45
HOXD3-204ENST00000459979 LRP10Q7Z4F1 713 aa24.09■■□□□ 1.45
HOXD3-204ENST00000459979 NBPF5PQ86XG9 351 aaPredicted RBP24.09■■□□□ 1.45
HOXD3-204ENST00000459979 MASTLQ96GX5 879 aa24.09■■□□□ 1.45
HOXD3-204ENST00000459979 MBIPQ9NS73 344 aa24.08■■□□□ 1.45
HOXD3-204ENST00000459979 LTBP3Q9NS15 1303 aa24.08■■□□□ 1.44
HOXD3-204ENST00000459979 FAM177BA6PVY3 158 aa24.07■■□□□ 1.44
HOXD3-204ENST00000459979 MYL6BP14649 208 aa24.07■■□□□ 1.44
HOXD3-204ENST00000459979 EIF2S2P20042 333 aaKnown RBP24.07■■□□□ 1.44
HOXD3-204ENST00000459979 MAP3K15Q6ZN16 1313 aa24.07■■□□□ 1.44
HOXD3-204ENST00000459979 NUP98P52948 1817 aa24.06■■□□□ 1.44
HOXD3-204ENST00000459979 DDNO94850 711 aaPredicted RBP24.06■■□□□ 1.44
HOXD3-204ENST00000459979 HLFQ16534 295 aa24.06■■□□□ 1.44
HOXD3-204ENST00000459979 KRT24Q2M2I5 525 aa24.06■■□□□ 1.44
HOXD3-204ENST00000459979 COL13A1Q5TAT6 717 aaPredicted RBP24.06■■□□□ 1.44
HOXD3-204ENST00000459979 KIF6Q6ZMV9 814 aa24.05■■□□□ 1.44
HOXD3-204ENST00000459979 TTLL7Q6ZT98 887 aa24.05■■□□□ 1.44
HOXD3-204ENST00000459979 WWC1Q8IX03 1113 aa24.05■■□□□ 1.44
HOXD3-204ENST00000459979 NIP7Q9Y221 180 aaKnown RBP eCLIP24.05■■□□□ 1.44
HOXD3-204ENST00000459979 NGEFQ8N5V2 710 aa24.04■■□□□ 1.44
HOXD3-204ENST00000459979 DDX21Q9NR30 783 aaKnown RBP eCLIP24.04■■□□□ 1.44
HOXD3-204ENST00000459979 POTEIP0CG38 1075 aa24.03■■□□□ 1.44
HOXD3-204ENST00000459979 POTEJP0CG39 1038 aa24.03■■□□□ 1.44
HOXD3-204ENST00000459979 OLFM4Q6UX06 510 aa24.03■■□□□ 1.44
HOXD3-204ENST00000459979 PROSER3Q2NL68 480 aa24.02■■□□□ 1.44
HOXD3-204ENST00000459979 SOGA3Q5TF21 947 aa24.02■■□□□ 1.44
HOXD3-204ENST00000459979 DUSP27Q5VZP5 1158 aa24.02■■□□□ 1.44
HOXD3-204ENST00000459979 C7orf43Q8WVR3 580 aa24.02■■□□□ 1.44
HOXD3-204ENST00000459979 NPR1P16066 1061 aa24.01■■□□□ 1.43
HOXD3-204ENST00000459979 IL16Q14005 1332 aa24.01■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 85.8 ms