RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 RIC3Q7Z5B4 369 aa18.32■□□□□ 0.52
LDLR-202ENST00000455727 KAZALD1Q96I82 304 aa18.32■□□□□ 0.52
LDLR-202ENST00000455727 PALD1Q9ULE6 856 aa18.32■□□□□ 0.52
LDLR-202ENST00000455727 ZNF496Q96IT1 587 aaPredicted RBP18.32■□□□□ 0.52
LDLR-202ENST00000455727 IGKV5-2P06315 115 aa18.31■□□□□ 0.52
LDLR-202ENST00000455727 NEXNQ0ZGT2 675 aa18.31■□□□□ 0.52
LDLR-202ENST00000455727 AIMP1Q12904 312 aaKnown RBP18.31■□□□□ 0.52
LDLR-202ENST00000455727 CUL4AQ13619 759 aa18.31■□□□□ 0.52
LDLR-202ENST00000455727 GPATCH3Q96I76 525 aa18.31■□□□□ 0.52
LDLR-202ENST00000455727 SUCLG2Q96I99 432 aa18.31■□□□□ 0.52
LDLR-202ENST00000455727 TMX3Q96JJ7 454 aa18.31■□□□□ 0.52
LDLR-202ENST00000455727 CHRNA2Q15822 529 aa18.31■□□□□ 0.52
LDLR-202ENST00000455727 ECHDC1Q9NTX5 307 aa18.31■□□□□ 0.52
LDLR-202ENST00000455727 LRP10Q7Z4F1 713 aa18.3■□□□□ 0.52
LDLR-202ENST00000455727 TTC5Q8N0Z6 440 aa18.3■□□□□ 0.52
LDLR-202ENST00000455727 METTL22Q9BUU2 404 aaPredicted RBP18.3■□□□□ 0.52
LDLR-202ENST00000455727 RAD50Q92878 1312 aa18.3■□□□□ 0.52
LDLR-202ENST00000455727 NEURL1BA8MQ27 555 aa18.29■□□□□ 0.52
LDLR-202ENST00000455727 ZGPATQ8N5A5 531 aaKnown RBP18.29■□□□□ 0.52
LDLR-202ENST00000455727 INTS4Q96HW7 963 aaKnown RBP18.29■□□□□ 0.52
LDLR-202ENST00000455727 FMNL2Q96PY5 1086 aa18.29■□□□□ 0.52
LDLR-202ENST00000455727 IL25Q9H293 177 aa18.29■□□□□ 0.52
LDLR-202ENST00000455727 BICC1Q9H694 974 aaKnown RBP18.29■□□□□ 0.52
LDLR-202ENST00000455727 XRCC6P12956 609 aaKnown RBP eCLIP18.29■□□□□ 0.52
LDLR-202ENST00000455727 XAGE3Q8WTP9 111 aa18.29■□□□□ 0.52
LDLR-202ENST00000455727 MAP4K4O95819 1239 aaPredicted RBP18.28■□□□□ 0.52
LDLR-202ENST00000455727 MRE11P49959 708 aa18.28■□□□□ 0.52
LDLR-202ENST00000455727 GCKRQ14397 625 aa18.28■□□□□ 0.52
LDLR-202ENST00000455727 COPS6Q7L5N1 327 aa18.28■□□□□ 0.52
LDLR-202ENST00000455727 LAMB4A4D0S4 1761 aa18.28■□□□□ 0.52
LDLR-202ENST00000455727 IFIT2P09913 472 aaKnown RBP18.28■□□□□ 0.52
LDLR-202ENST00000455727 MYL6BP14649 208 aa18.28■□□□□ 0.52
LDLR-202ENST00000455727 PA2G4Q9UQ80 394 aaKnown RBP18.28■□□□□ 0.52
LDLR-202ENST00000455727 G3BP1Q13283 466 aaKnown RBP eCLIP18.27■□□□□ 0.52
LDLR-202ENST00000455727 KLHL40Q2TBA0 621 aa18.27■□□□□ 0.52
LDLR-202ENST00000455727 ANKRD13DQ6ZTN6 518 aa18.27■□□□□ 0.52
LDLR-202ENST00000455727 BRINP3Q76B58 766 aa18.27■□□□□ 0.52
LDLR-202ENST00000455727 RUFY2Q8WXA3 655 aa18.27■□□□□ 0.52
LDLR-202ENST00000455727 LSG1Q9H089 658 aaKnown RBP18.27■□□□□ 0.52
LDLR-202ENST00000455727 USP16Q9Y5T5 823 aa18.27■□□□□ 0.52
LDLR-202ENST00000455727 COL15A1P39059 1388 aa18.27■□□□□ 0.51
LDLR-202ENST00000455727 SASH1O94885 1247 aa18.26■□□□□ 0.51
LDLR-202ENST00000455727 CABP4P57796 275 aa18.26■□□□□ 0.51
LDLR-202ENST00000455727 PKP1Q13835 747 aa18.26■□□□□ 0.51
LDLR-202ENST00000455727 KIAA1211Q6ZU35 1233 aa18.26■□□□□ 0.51
LDLR-202ENST00000455727 EVI5LQ96CN4 794 aa18.26■□□□□ 0.51
LDLR-202ENST00000455727 ZDHHC9Q9Y397 364 aa18.26■□□□□ 0.51
LDLR-202ENST00000455727 AACSQ86V21 672 aa18.25■□□□□ 0.51
LDLR-202ENST00000455727 DNAJC5Q9H3Z4 198 aa18.25■□□□□ 0.51
LDLR-202ENST00000455727 GLI3P10071 1580 aa18.25■□□□□ 0.51
LDLR-202ENST00000455727 AFDNP55196 1824 aaKnown RBP18.25■□□□□ 0.51
LDLR-202ENST00000455727 WDR17Q8IZU2 1322 aa18.25■□□□□ 0.51
LDLR-202ENST00000455727 ARFGEF2Q9Y6D5 1785 aa18.25■□□□□ 0.51
LDLR-202ENST00000455727 MYD88Q99836 296 aa18.24■□□□□ 0.51
LDLR-202ENST00000455727 RTN4Q9NQC3 1192 aaKnown RBP18.24■□□□□ 0.51
LDLR-202ENST00000455727 ERBB4Q15303 1308 aa18.24■□□□□ 0.51
LDLR-202ENST00000455727 HSPA2P54652 639 aa18.24■□□□□ 0.51
LDLR-202ENST00000455727 DIAPH3Q9NSV4 1193 aa18.24■□□□□ 0.51
LDLR-202ENST00000455727 SOS2Q07890 1332 aaPredicted RBP18.24■□□□□ 0.51
LDLR-202ENST00000455727 CWC27Q6UX04 472 aaKnown RBP18.23■□□□□ 0.51
LDLR-202ENST00000455727 MCTP1Q6DN14 999 aa18.23■□□□□ 0.51
LDLR-202ENST00000455727 EAF2Q96CJ1 260 aaPredicted RBP18.23■□□□□ 0.51
LDLR-202ENST00000455727 GRPEL1Q9HAV7 217 aa18.23■□□□□ 0.51
LDLR-202ENST00000455727 SNX14Q9Y5W7 946 aa18.23■□□□□ 0.51
LDLR-202ENST00000455727 DDX49Q9Y6V7 483 aaKnown RBP18.23■□□□□ 0.51
LDLR-202ENST00000455727 PCDH11XQ9BZA7 1347 aa18.23■□□□□ 0.51
LDLR-202ENST00000455727 PCDH11YQ9BZA8 1340 aa18.23■□□□□ 0.51
LDLR-202ENST00000455727 HIP1O00291 1037 aa18.22■□□□□ 0.51
LDLR-202ENST00000455727 LMBRD1Q9NUN5 540 aa18.22■□□□□ 0.51
LDLR-202ENST00000455727 UBR2Q8IWV8 1755 aa18.22■□□□□ 0.51
LDLR-202ENST00000455727 UPF3BQ9BZI7 483 aaKnown RBP18.22■□□□□ 0.51
LDLR-202ENST00000455727 COPRSQ9NQ92 184 aa18.22■□□□□ 0.51
LDLR-202ENST00000455727 ERVV-2B6SEH9 535 aa18.21■□□□□ 0.51
LDLR-202ENST00000455727 PLBD2Q8NHP8 589 aa18.21■□□□□ 0.51
LDLR-202ENST00000455727 ZCRB1Q8TBF4 217 aaKnown RBP18.21■□□□□ 0.51
LDLR-202ENST00000455727 PRDM11Q9NQV5 511 aa18.21■□□□□ 0.51
LDLR-202ENST00000455727 STRCQ7RTU9 1775 aa18.21■□□□□ 0.51
LDLR-202ENST00000455727 BRD1O95696 1058 aa18.21■□□□□ 0.51
LDLR-202ENST00000455727 NKX1-1Q15270 411 aaPredicted RBP18.21■□□□□ 0.51
LDLR-202ENST00000455727 RABL6Q3YEC7 729 aaPredicted RBP18.21■□□□□ 0.51
LDLR-202ENST00000455727 KCNB2Q92953 911 aa18.21■□□□□ 0.51
LDLR-202ENST00000455727 EPHA10Q5JZY3 1008 aa18.2■□□□□ 0.5
LDLR-202ENST00000455727 TTC14Q96N46 770 aa18.2■□□□□ 0.5
LDLR-202ENST00000455727 SNRKQ9NRH2 765 aa18.2■□□□□ 0.5
LDLR-202ENST00000455727 COL5A2P05997 1499 aaPredicted RBP18.2■□□□□ 0.5
LDLR-202ENST00000455727 SLAIN2Q9P270 581 aa18.2■□□□□ 0.5
LDLR-202ENST00000455727 FAM43AQ8N2R8 423 aa18.19■□□□□ 0.5
LDLR-202ENST00000455727 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.19■□□□□ 0.5
LDLR-202ENST00000455727 RFX5P48382 616 aaPredicted RBP18.18■□□□□ 0.5
LDLR-202ENST00000455727 TOM1L2Q6ZVM7 507 aa18.18■□□□□ 0.5
LDLR-202ENST00000455727 RASEFQ8IZ41 740 aa18.18■□□□□ 0.5
LDLR-202ENST00000455727 TM6SF1Q9BZW5 370 aa18.18■□□□□ 0.5
LDLR-202ENST00000455727 PAPPAQ13219 1627 aa18.18■□□□□ 0.5
LDLR-202ENST00000455727 ABCA3Q99758 1704 aa18.18■□□□□ 0.5
LDLR-202ENST00000455727 CARD10Q9BWT7 1032 aa18.18■□□□□ 0.5
LDLR-202ENST00000455727 CCDC8Q9H0W5 538 aaPredicted RBP18.18■□□□□ 0.5
LDLR-202ENST00000455727 GAS2L3Q86XJ1 694 aa18.17■□□□□ 0.5
LDLR-202ENST00000455727 CASP7P55210 303 aa18.17■□□□□ 0.5
LDLR-202ENST00000455727 PANK2Q9BZ23 570 aa18.17■□□□□ 0.5
LDLR-202ENST00000455727 SIL1Q9H173 461 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms