RNA–Protein interactions for RNA: ENST00000451053.2

VPS33A-202, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3 BASIC

Gene VPS33A, Length 1,154 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-202ENST00000451053 KIF6Q6ZMV9 814 aa16.7■□□□□ 0.26
VPS33A-202ENST00000451053 SLC16A10Q8TF71 515 aa16.7■□□□□ 0.26
VPS33A-202ENST00000451053 ZNF428Q96B54 188 aa16.7■□□□□ 0.26
VPS33A-202ENST00000451053 ZBTB3Q9H5J0 574 aa16.7■□□□□ 0.26
VPS33A-202ENST00000451053 MAP3K15Q6ZN16 1313 aa16.7■□□□□ 0.26
VPS33A-202ENST00000451053 RARSP54136 660 aaKnown RBP16.69■□□□□ 0.26
VPS33A-202ENST00000451053 FKBP8Q14318 412 aa16.69■□□□□ 0.26
VPS33A-202ENST00000451053 HLFQ16534 295 aa16.69■□□□□ 0.26
VPS33A-202ENST00000451053 ALDH1L2Q3SY69 923 aa16.69■□□□□ 0.26
VPS33A-202ENST00000451053 MRPL50Q8N5N7 158 aaKnown RBP16.69■□□□□ 0.26
VPS33A-202ENST00000451053 MTFR1LQ9H019 292 aa16.69■□□□□ 0.26
VPS33A-202ENST00000451053 ATF5Q9Y2D1 282 aaPredicted RBP16.69■□□□□ 0.26
VPS33A-202ENST00000451053 FLIIQ13045 1269 aa16.68■□□□□ 0.26
VPS33A-202ENST00000451053 SMC4Q9NTJ3 1288 aa16.68■□□□□ 0.26
VPS33A-202ENST00000451053 ERVV-1B6SEH8 477 aa16.67■□□□□ 0.26
VPS33A-202ENST00000451053 CACNA1FO60840 1977 aa16.67■□□□□ 0.26
VPS33A-202ENST00000451053 COL24A1Q17RW2 1714 aa16.67■□□□□ 0.26
VPS33A-202ENST00000451053 TBC1D9BQ66K14 1250 aa16.66■□□□□ 0.26
VPS33A-202ENST00000451053 ANKRD13DQ6ZTN6 518 aa16.66■□□□□ 0.26
VPS33A-202ENST00000451053 NLGN1Q8N2Q7 840 aa16.66■□□□□ 0.26
VPS33A-202ENST00000451053 PLBD2Q8NHP8 589 aa16.66■□□□□ 0.26
VPS33A-202ENST00000451053 ARFGEF2Q9Y6D5 1785 aa16.66■□□□□ 0.26
VPS33A-202ENST00000451053 NUP98P52948 1817 aa16.66■□□□□ 0.26
VPS33A-202ENST00000451053 ADCY9O60503 1353 aa16.65■□□□□ 0.26
VPS33A-202ENST00000451053 BCAR3O75815 825 aa16.65■□□□□ 0.26
VPS33A-202ENST00000451053 CLEC4GQ6UXB4 293 aa16.65■□□□□ 0.26
VPS33A-202ENST00000451053 GIGYF2Q6Y7W6 1299 aaKnown RBP16.65■□□□□ 0.26
VPS33A-202ENST00000451053 BICDL1Q6ZP65 573 aa16.65■□□□□ 0.26
VPS33A-202ENST00000451053 ZNF652Q9Y2D9 606 aa16.65■□□□□ 0.26
VPS33A-202ENST00000451053 RGL2O15211 777 aa16.64■□□□□ 0.25
VPS33A-202ENST00000451053 DDX58O95786 925 aaKnown RBP16.64■□□□□ 0.25
VPS33A-202ENST00000451053 MMP10P09238 476 aa16.64■□□□□ 0.25
VPS33A-202ENST00000451053 PTGER2P43116 358 aa16.64■□□□□ 0.25
VPS33A-202ENST00000451053 FKBP5Q13451 457 aaPredicted RBP16.64■□□□□ 0.25
VPS33A-202ENST00000451053 NFIXQ14938 502 aa16.64■□□□□ 0.25
VPS33A-202ENST00000451053 SGIP1Q9BQI5 828 aa16.64■□□□□ 0.25
VPS33A-202ENST00000451053 ATP10DQ9P241 1426 aa16.63■□□□□ 0.25
VPS33A-202ENST00000451053 PI4KAP2A4QPH2 592 aa16.63■□□□□ 0.25
VPS33A-202ENST00000451053 TM4SF1P30408 202 aa16.63■□□□□ 0.25
VPS33A-202ENST00000451053 BRPF1P55201 1214 aaPredicted RBP16.63■□□□□ 0.25
VPS33A-202ENST00000451053 DDR1Q08345 913 aa16.63■□□□□ 0.25
VPS33A-202ENST00000451053 KSR2Q6VAB6 950 aa16.63■□□□□ 0.25
VPS33A-202ENST00000451053 RIC3Q7Z5B4 369 aa16.63■□□□□ 0.25
VPS33A-202ENST00000451053 PI4KAP1Q8N8J0 262 aa16.63■□□□□ 0.25
VPS33A-202ENST00000451053 SPON1Q9HCB6 807 aa16.63■□□□□ 0.25
VPS33A-202ENST00000451053 MAP3K2Q9Y2U5 619 aa16.63■□□□□ 0.25
VPS33A-202ENST00000451053 ANKRD36CQ5JPF3 1778 aa16.62■□□□□ 0.25
VPS33A-202ENST00000451053 F6X3S4 739 aa16.61■□□□□ 0.25
VPS33A-202ENST00000451053 POLRMTO00411 1230 aaKnown RBP16.61■□□□□ 0.25
VPS33A-202ENST00000451053 GPTP24298 496 aa16.61■□□□□ 0.25
VPS33A-202ENST00000451053 TCIRG1Q13488 830 aa16.61■□□□□ 0.25
VPS33A-202ENST00000451053 ZNF34Q8IZ26 560 aa16.61■□□□□ 0.25
VPS33A-202ENST00000451053 RCAN3Q9UKA8 241 aa16.61■□□□□ 0.25
VPS33A-202ENST00000451053 NOB1Q9ULX3 412 aaKnown RBP16.61■□□□□ 0.25
VPS33A-202ENST00000451053 NIP7Q9Y221 180 aaKnown RBP eCLIP16.61■□□□□ 0.25
VPS33A-202ENST00000451053 UBN2Q6ZU65 1347 aa16.61■□□□□ 0.25
VPS33A-202ENST00000451053 POLD1P28340 1107 aa16.6■□□□□ 0.25
VPS33A-202ENST00000451053 HSP90AB3PQ58FF7 597 aa16.6■□□□□ 0.25
VPS33A-202ENST00000451053 SETDB2Q96T68 719 aa16.6■□□□□ 0.25
VPS33A-202ENST00000451053 MYD88Q99836 296 aa16.6■□□□□ 0.25
VPS33A-202ENST00000451053 METTL22Q9BUU2 404 aaPredicted RBP16.6■□□□□ 0.25
VPS33A-202ENST00000451053 PTPRCP08575 1304 aa16.6■□□□□ 0.25
VPS33A-202ENST00000451053 KIF16BQ96L93 1317 aa16.6■□□□□ 0.25
VPS33A-202ENST00000451053 CARMIL3Q8ND23 1372 aa16.6■□□□□ 0.25
VPS33A-202ENST00000451053 ATP5J2-PTCD1G3V325 749 aa16.59■□□□□ 0.25
VPS33A-202ENST00000451053 DNAAF4Q8WXU2 420 aa16.59■□□□□ 0.25
VPS33A-202ENST00000451053 PARP3Q9Y6F1 533 aa16.59■□□□□ 0.25
VPS33A-202ENST00000451053 FAM177BA6PVY3 158 aa16.58■□□□□ 0.24
VPS33A-202ENST00000451053 SERPINB2P05120 415 aa16.58■□□□□ 0.24
VPS33A-202ENST00000451053 FRAT1Q92837 279 aaPredicted RBP16.58■□□□□ 0.24
VPS33A-202ENST00000451053 ISCA1Q9BUE6 129 aa16.58■□□□□ 0.24
VPS33A-202ENST00000451053 LRP5O75197 1615 aa16.58■□□□□ 0.24
VPS33A-202ENST00000451053 AFDNP55196 1824 aaKnown RBP16.58■□□□□ 0.24
VPS33A-202ENST00000451053 NRXN2Q9P2S2 1712 aa16.57■□□□□ 0.24
VPS33A-202ENST00000451053 IGKV5-2P06315 115 aa16.57■□□□□ 0.24
VPS33A-202ENST00000451053 SUSD4Q5VX71 490 aa16.57■□□□□ 0.24
VPS33A-202ENST00000451053 NLRP10Q86W26 655 aa16.57■□□□□ 0.24
VPS33A-202ENST00000451053 TNNQ9UQP3 1299 aa16.57■□□□□ 0.24
VPS33A-202ENST00000451053 CWF19L2Q2TBE0 894 aaKnown RBP16.56■□□□□ 0.24
VPS33A-202ENST00000451053 PARP10Q53GL7 1025 aa16.56■□□□□ 0.24
VPS33A-202ENST00000451053 SLC4A10Q6U841 1118 aa16.56■□□□□ 0.24
VPS33A-202ENST00000451053 NBPF5PQ86XG9 351 aaPredicted RBP16.56■□□□□ 0.24
VPS33A-202ENST00000451053 NTSR2O95665 410 aa16.55■□□□□ 0.24
VPS33A-202ENST00000451053 TRIM27P14373 513 aa16.55■□□□□ 0.24
VPS33A-202ENST00000451053 NEXNQ0ZGT2 675 aa16.55■□□□□ 0.24
VPS33A-202ENST00000451053 TRIM28Q13263 835 aaKnown RBP16.55■□□□□ 0.24
VPS33A-202ENST00000451053 BEND3Q5T5X7 828 aa16.55■□□□□ 0.24
VPS33A-202ENST00000451053 PRR5LQ6MZQ0 368 aa16.55■□□□□ 0.24
VPS33A-202ENST00000451053 CCDC24Q8N4L8 307 aa16.55■□□□□ 0.24
VPS33A-202ENST00000451053 ARHGAP45Q92619 1136 aa16.55■□□□□ 0.24
VPS33A-202ENST00000451053 API5Q9BZZ5 524 aaKnown RBP16.55■□□□□ 0.24
VPS33A-202ENST00000451053 PXDNLA1KZ92 1463 aa16.54■□□□□ 0.24
VPS33A-202ENST00000451053 IBTKQ9P2D0 1353 aaPredicted RBP16.54■□□□□ 0.24
VPS33A-202ENST00000451053 NEURL1BA8MQ27 555 aa16.54■□□□□ 0.24
VPS33A-202ENST00000451053 IPO8O15397 1037 aaKnown RBP16.54■□□□□ 0.24
VPS33A-202ENST00000451053 ZKSCAN2Q63HK3 967 aa16.54■□□□□ 0.24
VPS33A-202ENST00000451053 ATF7IPQ6VMQ6 1270 aa16.54■□□□□ 0.24
VPS33A-202ENST00000451053 CNBD1Q8NA66 436 aa16.54■□□□□ 0.24
VPS33A-202ENST00000451053 LINS1Q8NG48 757 aa16.54■□□□□ 0.24
VPS33A-202ENST00000451053 C10orf71Q711Q0 1435 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms