RNA–Protein interactions for RNA: ENST00000449234.1

RFX3-208, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 633 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-208	ENST00000449234	NCL	P19338	710 aa	Known RBP	13.88	□□□□□ -0.19
RFX3-208	ENST00000449234	EIF2S2	P20042	333 aa	Known RBP	13.88	□□□□□ -0.19
RFX3-208	ENST00000449234	ZSCAN23	Q3MJ62	389 aa		13.88	□□□□□ -0.19
RFX3-208	ENST00000449234	TICAM2	Q86XR7	235 aa		13.88	□□□□□ -0.19
RFX3-208	ENST00000449234	LINS1	Q8NG48	757 aa		13.88	□□□□□ -0.19
RFX3-208	ENST00000449234	NECTIN2	Q92692	538 aa		13.88	□□□□□ -0.19
RFX3-208	ENST00000449234	CHPF2	Q9P2E5	772 aa		13.88	□□□□□ -0.19
RFX3-208	ENST00000449234	ABCC6	O95255	1503 aa		13.88	□□□□□ -0.19
RFX3-208	ENST00000449234	ADCY9	O60503	1353 aa		13.87	□□□□□ -0.19
RFX3-208	ENST00000449234	LETM1	O95202	739 aa	Predicted RBP	13.87	□□□□□ -0.19
RFX3-208	ENST00000449234	LRSAM1	Q6UWE0	723 aa		13.87	□□□□□ -0.19
RFX3-208	ENST00000449234	DDX21	Q9NR30	783 aa	Known RBP eCLIP	13.87	□□□□□ -0.19
RFX3-208	ENST00000449234	ECHDC1	Q9NTX5	307 aa		13.87	□□□□□ -0.19
RFX3-208	ENST00000449234	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	13.87	□□□□□ -0.19
RFX3-208	ENST00000449234	ADAMTS7	Q9UKP4	1686 aa		13.87	□□□□□ -0.19
RFX3-208	ENST00000449234	NBPF7	P0C2Y1	421 aa	Predicted RBP	13.86	□□□□□ -0.19
RFX3-208	ENST00000449234	USHBP1	Q8N6Y0	703 aa		13.86	□□□□□ -0.19
RFX3-208	ENST00000449234	TMEM87A	Q8NBN3	555 aa		13.86	□□□□□ -0.19
RFX3-208	ENST00000449234	ANKRD24	Q8TF21	1146 aa		13.86	□□□□□ -0.19
RFX3-208	ENST00000449234	EVI5L	Q96CN4	794 aa		13.86	□□□□□ -0.19
RFX3-208	ENST00000449234	LSG1	Q9H089	658 aa	Known RBP	13.86	□□□□□ -0.19
RFX3-208	ENST00000449234	SNRK	Q9NRH2	765 aa		13.86	□□□□□ -0.19
RFX3-208	ENST00000449234	C9orf78	Q9NZ63	289 aa	Predicted RBP	13.86	□□□□□ -0.19
RFX3-208	ENST00000449234	LIMCH1	Q9UPQ0	1083 aa		13.86	□□□□□ -0.19
RFX3-208	ENST00000449234	ATP6V1D	Q9Y5K8	247 aa		13.86	□□□□□ -0.19
RFX3-208	ENST00000449234	NPHP4	O75161	1426 aa	Predicted RBP	13.86	□□□□□ -0.19
RFX3-208	ENST00000449234	CRYBG1	Q9Y4K1	1723 aa		13.85	□□□□□ -0.19
RFX3-208	ENST00000449234	PHF14	O94880	888 aa		13.85	□□□□□ -0.19
RFX3-208	ENST00000449234	MCM5	P33992	734 aa		13.85	□□□□□ -0.19
RFX3-208	ENST00000449234	CAVIN1	Q6NZI2	390 aa	Known RBP	13.85	□□□□□ -0.19
RFX3-208	ENST00000449234	LARP1	Q6PKG0	1096 aa	Known RBP	13.85	□□□□□ -0.19
RFX3-208	ENST00000449234	NUTM1	Q86Y26	1132 aa		13.85	□□□□□ -0.19
RFX3-208	ENST00000449234	UNC5CL	Q8IV45	518 aa		13.85	□□□□□ -0.19
RFX3-208	ENST00000449234	PDLIM2	Q96JY6	352 aa		13.85	□□□□□ -0.19
RFX3-208	ENST00000449234	TTC14	Q96N46	770 aa		13.85	□□□□□ -0.19
RFX3-208	ENST00000449234	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	13.85	□□□□□ -0.19
RFX3-208	ENST00000449234	IL1RAPL2	Q9NP60	686 aa		13.85	□□□□□ -0.19
RFX3-208	ENST00000449234	SH2B1	Q9NRF2	756 aa	Predicted RBP	13.85	□□□□□ -0.19
RFX3-208	ENST00000449234	PALD1	Q9ULE6	856 aa		13.85	□□□□□ -0.19
RFX3-208	ENST00000449234	CSPP1	Q1MSJ5	1256 aa		13.84	□□□□□ -0.19
RFX3-208	ENST00000449234	UVSSA	Q2YD98	709 aa		13.84	□□□□□ -0.19
RFX3-208	ENST00000449234	ZSCAN30	Q86W11	494 aa		13.84	□□□□□ -0.19
RFX3-208	ENST00000449234	SNX14	Q9Y5W7	946 aa		13.84	□□□□□ -0.19
RFX3-208	ENST00000449234	KIF1A	Q12756	1690 aa		13.84	□□□□□ -0.19
RFX3-208	ENST00000449234	COL15A1	P39059	1388 aa		13.83	□□□□□ -0.19
RFX3-208	ENST00000449234	IFIT2	P09913	472 aa	Known RBP	13.83	□□□□□ -0.2
RFX3-208	ENST00000449234	TERF1	P54274	439 aa		13.83	□□□□□ -0.2
RFX3-208	ENST00000449234	G3BP1	Q13283	466 aa	Known RBP eCLIP	13.83	□□□□□ -0.2
RFX3-208	ENST00000449234	OS9	Q13438	667 aa	Predicted RBP	13.83	□□□□□ -0.2
RFX3-208	ENST00000449234	PKP1	Q13835	747 aa		13.83	□□□□□ -0.2
RFX3-208	ENST00000449234	VPS53	Q5VIR6	699 aa		13.83	□□□□□ -0.2
RFX3-208	ENST00000449234	MPRIP	Q6WCQ1	1025 aa		13.83	□□□□□ -0.2
RFX3-208	ENST00000449234	KRT28	Q7Z3Y7	464 aa		13.83	□□□□□ -0.2
RFX3-208	ENST00000449234	GPT2	Q8TD30	523 aa		13.83	□□□□□ -0.2
RFX3-208	ENST00000449234	DIAPH3	Q9NSV4	1193 aa		13.83	□□□□□ -0.2
RFX3-208	ENST00000449234	MAP3K2	Q9Y2U5	619 aa		13.83	□□□□□ -0.2
RFX3-208	ENST00000449234	GRM8	O00222	908 aa		13.82	□□□□□ -0.2
RFX3-208	ENST00000449234	KCNQ3	O43525	872 aa		13.82	□□□□□ -0.2
RFX3-208	ENST00000449234	FAM184A	Q8NB25	1140 aa		13.82	□□□□□ -0.2
RFX3-208	ENST00000449234	SPG7	Q9UQ90	795 aa		13.82	□□□□□ -0.2
RFX3-208	ENST00000449234	PSMA5	P28066	241 aa		13.81	□□□□□ -0.2
RFX3-208	ENST00000449234	NEXN	Q0ZGT2	675 aa		13.81	□□□□□ -0.2
RFX3-208	ENST00000449234	TSHZ3	Q63HK5	1081 aa		13.81	□□□□□ -0.2
RFX3-208	ENST00000449234	C19orf44	Q9H6X5	657 aa		13.81	□□□□□ -0.2
RFX3-208	ENST00000449234	ZSWIM6	Q9HCJ5	1215 aa		13.81	□□□□□ -0.2
RFX3-208	ENST00000449234	SIPA1L3	O60292	1781 aa	Predicted RBP	13.81	□□□□□ -0.2
RFX3-208	ENST00000449234	AK9	Q5TCS8	1911 aa		13.8	□□□□□ -0.2
RFX3-208	ENST00000449234	ADAMTSL3	P82987	1691 aa		13.8	□□□□□ -0.2
RFX3-208	ENST00000449234	ZKSCAN1	P17029	563 aa	Predicted RBP	13.8	□□□□□ -0.2
RFX3-208	ENST00000449234	TSGA10IP	Q3SY00	556 aa		13.8	□□□□□ -0.2
RFX3-208	ENST00000449234	LRRC59	Q96AG4	307 aa	Known RBP	13.8	□□□□□ -0.2
RFX3-208	ENST00000449234	ARX	Q96QS3	562 aa		13.8	□□□□□ -0.2
RFX3-208	ENST00000449234	TRPM3	Q9HCF6	1732 aa	Predicted RBP	13.8	□□□□□ -0.2
RFX3-208	ENST00000449234	ZSCAN22	P10073	491 aa	Predicted RBP	13.79	□□□□□ -0.2
RFX3-208	ENST00000449234	TAT	P17735	454 aa	Predicted RBP	13.79	□□□□□ -0.2
RFX3-208	ENST00000449234	NECTIN1	Q15223	517 aa		13.79	□□□□□ -0.2
RFX3-208	ENST00000449234	ANKRD1	Q15327	319 aa		13.79	□□□□□ -0.2
RFX3-208	ENST00000449234	RAPGEF4	Q8WZA2	1011 aa		13.79	□□□□□ -0.2
RFX3-208	ENST00000449234	RBSN	Q9H1K0	784 aa		13.79	□□□□□ -0.2
RFX3-208	ENST00000449234	ANO8	Q9HCE9	1232 aa	Predicted RBP	13.79	□□□□□ -0.2
RFX3-208	ENST00000449234	TMEM63C	Q9P1W3	806 aa		13.79	□□□□□ -0.2
RFX3-208	ENST00000449234	CYP46A1	Q9Y6A2	500 aa		13.79	□□□□□ -0.2
RFX3-208	ENST00000449234	PRIM1	P49642	420 aa	Known RBP	13.78	□□□□□ -0.2
RFX3-208	ENST00000449234	PDIA6	Q15084	440 aa		13.78	□□□□□ -0.2
RFX3-208	ENST00000449234	RNF20	Q5VTR2	975 aa		13.78	□□□□□ -0.2
RFX3-208	ENST00000449234	MAP4K1	Q92918	833 aa		13.78	□□□□□ -0.2
RFX3-208	ENST00000449234	ORAI2	Q96SN7	254 aa		13.78	□□□□□ -0.2
RFX3-208	ENST00000449234	METTL22	Q9BUU2	404 aa	Predicted RBP	13.78	□□□□□ -0.2
RFX3-208	ENST00000449234	SLC52A2	Q9HAB3	445 aa		13.78	□□□□□ -0.2
RFX3-208	ENST00000449234	SMC3	Q9UQE7	1217 aa		13.78	□□□□□ -0.2
RFX3-208	ENST00000449234	RFX7	Q2KHR2	1363 aa		13.78	□□□□□ -0.2
RFX3-208	ENST00000449234	C1orf167	Q5SNV9	1468 aa		13.78	□□□□□ -0.2
RFX3-208	ENST00000449234	TPM2	P07951	284 aa		13.77	□□□□□ -0.21
RFX3-208	ENST00000449234	RGPD2	P0DJD1	1756 aa		13.77	□□□□□ -0.21
RFX3-208	ENST00000449234	ERBB3	P21860	1342 aa		13.77	□□□□□ -0.21
RFX3-208	ENST00000449234	MSN	P26038	577 aa	Known RBP	13.77	□□□□□ -0.21
RFX3-208	ENST00000449234	DCC	P43146	1447 aa		13.77	□□□□□ -0.21
RFX3-208	ENST00000449234	AK2	P54819	239 aa		13.77	□□□□□ -0.21
RFX3-208	ENST00000449234	ERBB4	Q15303	1308 aa		13.77	□□□□□ -0.21
RFX3-208	ENST00000449234	ZNF790	Q6PG37	636 aa		13.77	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms