RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 NEUROD2Q15784 382 aa27.31■■□□□ 1.96
SDC1-205ENST00000447124 ZNF652Q9Y2D9 606 aa27.31■■□□□ 1.96
SDC1-205ENST00000447124 BCORQ6W2J9 1755 aa27.3■■□□□ 1.96
SDC1-205ENST00000447124 TTLL7Q6ZT98 887 aa27.3■■□□□ 1.96
SDC1-205ENST00000447124 NBPF5PQ86XG9 351 aaPredicted RBP27.3■■□□□ 1.96
SDC1-205ENST00000447124 NIP7Q9Y221 180 aaKnown RBP eCLIP27.3■■□□□ 1.96
SDC1-205ENST00000447124 RUNDC1Q96C34 613 aa27.29■■□□□ 1.96
SDC1-205ENST00000447124 TRIM35Q9UPQ4 493 aa27.29■■□□□ 1.96
SDC1-205ENST00000447124 NPHP1O15259 732 aa27.28■■□□□ 1.96
SDC1-205ENST00000447124 SRGNP10124 158 aa27.28■■□□□ 1.96
SDC1-205ENST00000447124 MYL6BP14649 208 aa27.28■■□□□ 1.96
SDC1-205ENST00000447124 ST5P78524 1137 aa27.28■■□□□ 1.96
SDC1-205ENST00000447124 WDR43Q15061 677 aaKnown RBP eCLIP27.28■■□□□ 1.96
SDC1-205ENST00000447124 NMRK2Q9NPI5 230 aa27.28■■□□□ 1.96
SDC1-205ENST00000447124 BABAM1Q9NWV8 329 aa27.28■■□□□ 1.96
SDC1-205ENST00000447124 DLEC1Q9Y238 1755 aa27.27■■□□□ 1.96
SDC1-205ENST00000447124 LMOD3Q0VAK6 560 aa27.27■■□□□ 1.96
SDC1-205ENST00000447124 ZNF219Q9P2Y4 722 aaPredicted RBP27.27■■□□□ 1.96
SDC1-205ENST00000447124 SBF1O95248 1867 aa27.26■■□□□ 1.95
SDC1-205ENST00000447124 FAM177BA6PVY3 158 aa27.26■■□□□ 1.95
SDC1-205ENST00000447124 ERVV-1B6SEH8 477 aa27.26■■□□□ 1.95
SDC1-205ENST00000447124 NFKBIEO00221 500 aa27.26■■□□□ 1.95
SDC1-205ENST00000447124 C21orf2O43822 256 aa27.26■■□□□ 1.95
SDC1-205ENST00000447124 TPTE2Q6XPS3 522 aa27.26■■□□□ 1.95
SDC1-205ENST00000447124 PDIA6Q15084 440 aa27.25■■□□□ 1.95
SDC1-205ENST00000447124 STYK1Q6J9G0 422 aa27.25■■□□□ 1.95
SDC1-205ENST00000447124 MAP3K15Q6ZN16 1313 aa27.24■■□□□ 1.95
SDC1-205ENST00000447124 KLRG2A4D1S0 409 aaPredicted RBP27.24■■□□□ 1.95
SDC1-205ENST00000447124 CHL1O00533 1208 aa27.24■■□□□ 1.95
SDC1-205ENST00000447124 EIF2S2P20042 333 aaKnown RBP27.24■■□□□ 1.95
SDC1-205ENST00000447124 LRP10Q7Z4F1 713 aa27.24■■□□□ 1.95
SDC1-205ENST00000447124 MASTLQ96GX5 879 aa27.24■■□□□ 1.95
SDC1-205ENST00000447124 LAMB4A4D0S4 1761 aa27.23■■□□□ 1.95
SDC1-205ENST00000447124 LMNB1P20700 586 aa27.23■■□□□ 1.95
SDC1-205ENST00000447124 CNKSR1Q969H4 720 aa27.23■■□□□ 1.95
SDC1-205ENST00000447124 ERBB4Q15303 1308 aa27.21■■□□□ 1.95
SDC1-205ENST00000447124 PROSER3Q2NL68 480 aa27.21■■□□□ 1.95
SDC1-205ENST00000447124 ZBTB3Q9H5J0 574 aa27.21■■□□□ 1.95
SDC1-205ENST00000447124 COL11A2P13942 1736 aaPredicted RBP27.21■■□□□ 1.95
SDC1-205ENST00000447124 ANXA1P04083 346 aa27.2■■□□□ 1.94
SDC1-205ENST00000447124 KRT24Q2M2I5 525 aa27.2■■□□□ 1.94
SDC1-205ENST00000447124 PRPF40BQ6NWY9 871 aaKnown RBP27.19■■□□□ 1.94
SDC1-205ENST00000447124 KIF6Q6ZMV9 814 aa27.19■■□□□ 1.94
SDC1-205ENST00000447124 C7orf43Q8WVR3 580 aa27.19■■□□□ 1.94
SDC1-205ENST00000447124 SLX4Q8IY92 1834 aa27.18■■□□□ 1.94
SDC1-205ENST00000447124 RRAGCQ9HB90 399 aa27.18■■□□□ 1.94
SDC1-205ENST00000447124 LAS1LQ9Y4W2 734 aaKnown RBP27.18■■□□□ 1.94
SDC1-205ENST00000447124 TOMM70O94826 608 aa27.17■■□□□ 1.94
SDC1-205ENST00000447124 NPR1P16066 1061 aa27.17■■□□□ 1.94
SDC1-205ENST00000447124 HSPA6P17066 643 aa27.17■■□□□ 1.94
SDC1-205ENST00000447124 GPTP24298 496 aa27.17■■□□□ 1.94
SDC1-205ENST00000447124 SUSD4Q5VX71 490 aa27.17■■□□□ 1.94
SDC1-205ENST00000447124 NUTM1Q86Y26 1132 aa27.17■■□□□ 1.94
SDC1-205ENST00000447124 ZNF34Q8IZ26 560 aa27.17■■□□□ 1.94
SDC1-205ENST00000447124 NECTIN2Q92692 538 aa27.17■■□□□ 1.94
SDC1-205ENST00000447124 UBN2Q6ZU65 1347 aa27.16■■□□□ 1.94
SDC1-205ENST00000447124 GIGYF2Q6Y7W6 1299 aaKnown RBP27.16■■□□□ 1.94
SDC1-205ENST00000447124 KDM2BQ8NHM5 1336 aa27.16■■□□□ 1.94
SDC1-205ENST00000447124 GTF2E1P29083 439 aaPredicted RBP27.15■■□□□ 1.94
SDC1-205ENST00000447124 ZEB1P37275 1124 aaPredicted RBP27.15■■□□□ 1.94
SDC1-205ENST00000447124 ERFEQ4G0M1 354 aa27.15■■□□□ 1.94
SDC1-205ENST00000447124 CCDC184Q52MB2 194 aa27.15■■□□□ 1.94
SDC1-205ENST00000447124 NUP98P52948 1817 aa27.14■■□□□ 1.94
SDC1-205ENST00000447124 APAF1O14727 1248 aa27.14■■□□□ 1.94
SDC1-205ENST00000447124 ZC3H4Q9UPT8 1303 aaKnown RBP27.14■■□□□ 1.93
SDC1-205ENST00000447124 CEP350Q5VT06 3117 aa27.13■■□□□ 1.93
SDC1-205ENST00000447124 ABCC12Q96J65 1359 aa27.13■■□□□ 1.93
SDC1-205ENST00000447124 GLTPD2A6NH11 291 aa27.13■■□□□ 1.93
SDC1-205ENST00000447124 NYXQ9GZU5 481 aa27.13■■□□□ 1.93
SDC1-205ENST00000447124 OLFM4Q6UX06 510 aa27.12■■□□□ 1.93
SDC1-205ENST00000447124 COPS6Q7L5N1 327 aa27.12■■□□□ 1.93
SDC1-205ENST00000447124 CCDC88AQ3V6T2 1871 aa27.12■■□□□ 1.93
SDC1-205ENST00000447124 LTBP3Q9NS15 1303 aa27.12■■□□□ 1.93
SDC1-205ENST00000447124 CFAP44Q96MT7 982 aa27.11■■□□□ 1.93
SDC1-205ENST00000447124 TAOK3Q9H2K8 898 aa27.11■■□□□ 1.93
SDC1-205ENST00000447124 FER1L6Q2WGJ9 1857 aa27.1■■□□□ 1.93
SDC1-205ENST00000447124 CRY2Q49AN0 593 aa27.1■■□□□ 1.93
SDC1-205ENST00000447124 XAGE3Q8WTP9 111 aa27.1■■□□□ 1.93
SDC1-205ENST00000447124 NTSR2O95665 410 aa27.09■■□□□ 1.93
SDC1-205ENST00000447124 ZNF853P0CG23 659 aa27.09■■□□□ 1.93
SDC1-205ENST00000447124 AIMP1Q12904 312 aaKnown RBP27.09■■□□□ 1.93
SDC1-205ENST00000447124 SOGA3Q5TF21 947 aa27.09■■□□□ 1.93
SDC1-205ENST00000447124 RBM46Q8TBY0 533 aaKnown RBP27.09■■□□□ 1.93
SDC1-205ENST00000447124 DDX21Q9NR30 783 aaKnown RBP eCLIP27.09■■□□□ 1.93
SDC1-205ENST00000447124 MBIPQ9NS73 344 aa27.08■■□□□ 1.93
SDC1-205ENST00000447124 POTECB2RU33 542 aa27.07■■□□□ 1.92
SDC1-205ENST00000447124 ALDH1B1P30837 517 aa27.07■■□□□ 1.92
SDC1-205ENST00000447124 C3orf67Q6ZVT6 689 aa27.07■■□□□ 1.92
SDC1-205ENST00000447124 CCDC93Q567U6 631 aa27.06■■□□□ 1.92
SDC1-205ENST00000447124 C16orf71Q8IYS4 520 aaPredicted RBP27.06■■□□□ 1.92
SDC1-205ENST00000447124 CHPF2Q9P2E5 772 aa27.06■■□□□ 1.92
SDC1-205ENST00000447124 IBTKQ9P2D0 1353 aaPredicted RBP27.06■■□□□ 1.92
SDC1-205ENST00000447124 CACNA1SQ13698 1873 aa27.05■■□□□ 1.92
SDC1-205ENST00000447124 HOXA10P31260 410 aaPredicted RBP27.05■■□□□ 1.92
SDC1-205ENST00000447124 PARP10Q53GL7 1025 aa27.05■■□□□ 1.92
SDC1-205ENST00000447124 PPP1R42Q7Z4L9 355 aa27.05■■□□□ 1.92
SDC1-205ENST00000447124 SLC10A5Q5PT55 438 aa27.04■■□□□ 1.92
SDC1-205ENST00000447124 HDGFL1Q5TGJ6 251 aa27.04■■□□□ 1.92
SDC1-205ENST00000447124 DUSP27Q5VZP5 1158 aa27.04■■□□□ 1.92
SDC1-205ENST00000447124 TNRC6CQ9HCJ0 1690 aaKnown RBP27.04■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms