RNA–Protein interactions for RNA: ENST00000446225.5

MCF2-206, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-206ENST00000446225 ITSN2Q9NZM3 1697 aa8.59□□□□□ -1.03
MCF2-206ENST00000446225 HOXB3P14651 431 aaPredicted RBP8.58□□□□□ -1.04
MCF2-206ENST00000446225 JUNDP17535 347 aa8.58□□□□□ -1.04
MCF2-206ENST00000446225 FAM50AQ14320 339 aaKnown RBP8.58□□□□□ -1.04
MCF2-206ENST00000446225 ZBED2Q9BTP6 218 aa8.58□□□□□ -1.04
MCF2-206ENST00000446225 CYLDQ9NQC7 956 aa8.58□□□□□ -1.04
MCF2-206ENST00000446225 RABGEF1Q9UJ41 708 aa8.58□□□□□ -1.04
MCF2-206ENST00000446225 METRNQ9UJH8 293 aa8.58□□□□□ -1.04
MCF2-206ENST00000446225 ANAPC15P60006 121 aa8.58□□□□□ -1.04
MCF2-206ENST00000446225 FAM98CQ17RN3 349 aaKnown RBP8.58□□□□□ -1.04
MCF2-206ENST00000446225 ZNF394Q53GI3 561 aa8.58□□□□□ -1.04
MCF2-206ENST00000446225 CCDC87Q9NVE4 849 aa8.58□□□□□ -1.04
MCF2-206ENST00000446225 DMGDHQ9UI17 866 aaKnown RBP8.58□□□□□ -1.04
MCF2-206ENST00000446225 MAGI2Q86UL8 1455 aa8.57□□□□□ -1.04
MCF2-206ENST00000446225 MLH3Q9UHC1 1453 aa8.57□□□□□ -1.04
MCF2-206ENST00000446225 M0R2N6 131 aa8.57□□□□□ -1.04
MCF2-206ENST00000446225 GPR182O15218 404 aa8.57□□□□□ -1.04
MCF2-206ENST00000446225 TSPY4P0CV99 314 aa8.57□□□□□ -1.04
MCF2-206ENST00000446225 TSPY10P0CW01 314 aa8.57□□□□□ -1.04
MCF2-206ENST00000446225 USP4Q13107 963 aa8.57□□□□□ -1.04
MCF2-206ENST00000446225 VTI1AQ96AJ9 217 aa8.57□□□□□ -1.04
MCF2-206ENST00000446225 SUGT1Q9Y2Z0 365 aa8.57□□□□□ -1.04
MCF2-206ENST00000446225 PCDHGB7Q9Y5F8 929 aa8.57□□□□□ -1.04
MCF2-206ENST00000446225 ZMYM4Q5VZL5 1548 aa8.57□□□□□ -1.04
MCF2-206ENST00000446225 GIGYF1O75420 1035 aaPredicted RBP8.56□□□□□ -1.04
MCF2-206ENST00000446225 STK10O94804 968 aaKnown RBP8.56□□□□□ -1.04
MCF2-206ENST00000446225 IGHA2P01877 340 aa8.56□□□□□ -1.04
MCF2-206ENST00000446225 CCNYL3P0C7X3 344 aa8.56□□□□□ -1.04
MCF2-206ENST00000446225 RNF20Q5VTR2 975 aa8.56□□□□□ -1.04
MCF2-206ENST00000446225 BRICD5Q6PL45 260 aa8.56□□□□□ -1.04
MCF2-206ENST00000446225 DDX41Q9UJV9 622 aaKnown RBP8.56□□□□□ -1.04
MCF2-206ENST00000446225 NOP58Q9Y2X3 529 aaKnown RBP8.56□□□□□ -1.04
MCF2-206ENST00000446225 RIPOR2Q9Y4F9 1068 aa8.56□□□□□ -1.04
MCF2-206ENST00000446225 MRPL42Q9Y6G3 142 aaKnown RBP8.56□□□□□ -1.04
MCF2-206ENST00000446225 KDM5CP41229 1560 aa8.56□□□□□ -1.04
MCF2-206ENST00000446225 ZFYVE16Q7Z3T8 1539 aa8.56□□□□□ -1.04
MCF2-206ENST00000446225 ATP10AO60312 1499 aa8.56□□□□□ -1.04
MCF2-206ENST00000446225 FOXO3O43524 673 aa8.56□□□□□ -1.04
MCF2-206ENST00000446225 ACTN4O43707 911 aaKnown RBP8.56□□□□□ -1.04
MCF2-206ENST00000446225 CLSTN1O94985 981 aa8.56□□□□□ -1.04
MCF2-206ENST00000446225 EIF1AXP47813 144 aaKnown RBP8.56□□□□□ -1.04
MCF2-206ENST00000446225 EVX2Q03828 476 aa8.56□□□□□ -1.04
MCF2-206ENST00000446225 MCF2L2Q86YR7 1114 aa8.56□□□□□ -1.04
MCF2-206ENST00000446225 EVA1BQ9NVM1 165 aa8.56□□□□□ -1.04
MCF2-206ENST00000446225 FZD6O60353 706 aa8.55□□□□□ -1.04
MCF2-206ENST00000446225 HSD3B2P26439 372 aa8.55□□□□□ -1.04
MCF2-206ENST00000446225 RACK1P63244 317 aaKnown RBP8.55□□□□□ -1.04
MCF2-206ENST00000446225 RNF187Q5TA31 235 aaPredicted RBP8.55□□□□□ -1.04
MCF2-206ENST00000446225 ZNF654Q8IZM8 581 aa8.55□□□□□ -1.04
MCF2-206ENST00000446225 ZCRB1Q8TBF4 217 aaKnown RBP8.55□□□□□ -1.04
MCF2-206ENST00000446225 ZNF526Q8TF50 670 aaPredicted RBP8.55□□□□□ -1.04
MCF2-206ENST00000446225 DCBLD2Q96PD2 775 aa8.55□□□□□ -1.04
MCF2-206ENST00000446225 FAM129BQ96TA1 746 aa8.55□□□□□ -1.04
MCF2-206ENST00000446225 SALL2Q9Y467 1007 aaPredicted RBP8.55□□□□□ -1.04
MCF2-206ENST00000446225 PTPN23Q9H3S7 1636 aa8.55□□□□□ -1.04
MCF2-206ENST00000446225 TCOF1Q13428 1488 aaKnown RBP8.55□□□□□ -1.04
MCF2-206ENST00000446225 CCDC141Q6ZP82 1450 aa8.55□□□□□ -1.04
MCF2-206ENST00000446225 ABCC5O15440 1437 aa8.55□□□□□ -1.04
MCF2-206ENST00000446225 LOC102724159A0A0B4J2E5 919 aa8.54□□□□□ -1.04
MCF2-206ENST00000446225 IGFBP4P22692 258 aa8.54□□□□□ -1.04
MCF2-206ENST00000446225 MLECQ14165 292 aa8.54□□□□□ -1.04
MCF2-206ENST00000446225 PWP2Q15269 919 aaKnown RBP8.54□□□□□ -1.04
MCF2-206ENST00000446225 VPS37DQ86XT2 251 aa8.54□□□□□ -1.04
MCF2-206ENST00000446225 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.54□□□□□ -1.04
MCF2-206ENST00000446225 CRELD1Q96HD1 420 aa8.54□□□□□ -1.04
MCF2-206ENST00000446225 ALG1LQ6GMV1 187 aa8.54□□□□□ -1.04
MCF2-206ENST00000446225 ALKBH8Q96BT7 664 aaKnown RBP8.54□□□□□ -1.04
MCF2-206ENST00000446225 CARD14Q9BXL6 1004 aa8.54□□□□□ -1.04
MCF2-206ENST00000446225 PNMA6FA0A0J9YX94 578 aa8.53□□□□□ -1.04
MCF2-206ENST00000446225 HAX1O00165 279 aa8.53□□□□□ -1.04
MCF2-206ENST00000446225 GNA15P30679 374 aa8.53□□□□□ -1.04
MCF2-206ENST00000446225 CCDC181Q5TID7 509 aa8.53□□□□□ -1.04
MCF2-206ENST00000446225 ALKBH2Q6NS38 261 aa8.53□□□□□ -1.04
MCF2-206ENST00000446225 C16orf46Q6P387 395 aa8.53□□□□□ -1.04
MCF2-206ENST00000446225 USP48Q86UV5 1035 aa8.53□□□□□ -1.04
MCF2-206ENST00000446225 SAP130Q9H0E3 1048 aa8.53□□□□□ -1.04
MCF2-206ENST00000446225 ARHGEF5Q12774 1597 aa8.53□□□□□ -1.04
MCF2-206ENST00000446225 HECW2Q9P2P5 1572 aa8.53□□□□□ -1.04
MCF2-206ENST00000446225 ARHGEF40Q8TER5 1519 aa8.53□□□□□ -1.04
MCF2-206ENST00000446225 RTEL1-TNFRSF6BF6WH68 1400 aa8.53□□□□□ -1.04
MCF2-206ENST00000446225 KIDINS220Q9ULH0 1771 aa8.53□□□□□ -1.04
MCF2-206ENST00000446225 ENOX2Q16206 610 aaKnown RBP8.52□□□□□ -1.04
MCF2-206ENST00000446225 NFE2L2Q16236 605 aa8.52□□□□□ -1.04
MCF2-206ENST00000446225 SCG3Q8WXD2 468 aaKnown RBP8.52□□□□□ -1.04
MCF2-206ENST00000446225 NUDT12Q9BQG2 462 aa8.52□□□□□ -1.04
MCF2-206ENST00000446225 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.52□□□□□ -1.04
MCF2-206ENST00000446225 RRP7BPQ9NSQ0 103 aa8.52□□□□□ -1.04
MCF2-206ENST00000446225 C9orf84Q5VXU9 1444 aa8.52□□□□□ -1.05
MCF2-206ENST00000446225 DIP2CQ9Y2E4 1556 aa8.52□□□□□ -1.05
MCF2-206ENST00000446225 MAGEB6P1A0A0J9YX57 407 aa8.52□□□□□ -1.05
MCF2-206ENST00000446225 ESPNB1AK53 854 aa8.52□□□□□ -1.05
MCF2-206ENST00000446225 PARNO95453 639 aaKnown RBP8.52□□□□□ -1.05
MCF2-206ENST00000446225 FGRP09769 529 aa8.52□□□□□ -1.05
MCF2-206ENST00000446225 SH3BP5LQ7L8J4 393 aa8.52□□□□□ -1.05
MCF2-206ENST00000446225 BRINP2Q9C0B6 783 aa8.52□□□□□ -1.05
MCF2-206ENST00000446225 NIF3L1Q9GZT8 377 aa8.52□□□□□ -1.05
MCF2-206ENST00000446225 MYH16Q9H6N6 1097 aa8.52□□□□□ -1.05
MCF2-206ENST00000446225 SLC52A1Q9NWF4 448 aa8.52□□□□□ -1.05
MCF2-206ENST00000446225 PCDHB11Q9Y5F2 797 aa8.52□□□□□ -1.05
MCF2-206ENST00000446225 ATP7AQ04656 1500 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms