RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 NARFQ9UHQ1 456 aa20.12■□□□□ 0.81
USP40-206ENST00000443711 MAP3K15Q6ZN16 1313 aa20.11■□□□□ 0.81
USP40-206ENST00000443711 ERVV-1B6SEH8 477 aa20.11■□□□□ 0.81
USP40-206ENST00000443711 MSH5O43196 834 aa20.11■□□□□ 0.81
USP40-206ENST00000443711 KSR2Q6VAB6 950 aa20.11■□□□□ 0.81
USP40-206ENST00000443711 COL23A1Q86Y22 540 aaPredicted RBP20.11■□□□□ 0.81
USP40-206ENST00000443711 PLBD2Q8NHP8 589 aa20.11■□□□□ 0.81
USP40-206ENST00000443711 ARHGAP45Q92619 1136 aa20.11■□□□□ 0.81
USP40-206ENST00000443711 FRAT1Q92837 279 aaPredicted RBP20.11■□□□□ 0.81
USP40-206ENST00000443711 C4AP0C0L4 1744 aa20.1■□□□□ 0.81
USP40-206ENST00000443711 RIC3Q7Z5B4 369 aa20.1■□□□□ 0.81
USP40-206ENST00000443711 ZBTB3Q9H5J0 574 aa20.1■□□□□ 0.81
USP40-206ENST00000443711 PI4KAP2A4QPH2 592 aa20.09■□□□□ 0.81
USP40-206ENST00000443711 CAMTA2O94983 1202 aa20.09■□□□□ 0.81
USP40-206ENST00000443711 ZKSCAN2Q63HK3 967 aa20.09■□□□□ 0.81
USP40-206ENST00000443711 PI4KAP1Q8N8J0 262 aa20.09■□□□□ 0.81
USP40-206ENST00000443711 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.09■□□□□ 0.81
USP40-206ENST00000443711 API5Q9BZZ5 524 aaKnown RBP20.09■□□□□ 0.81
USP40-206ENST00000443711 USP42Q9H9J4 1324 aaKnown RBP20.08■□□□□ 0.81
USP40-206ENST00000443711 RGL2O15211 777 aa20.08■□□□□ 0.81
USP40-206ENST00000443711 USPL1Q5W0Q7 1092 aa20.08■□□□□ 0.81
USP40-206ENST00000443711 SRP68Q9UHB9 627 aaKnown RBP20.08■□□□□ 0.81
USP40-206ENST00000443711 NUP98P52948 1817 aa20.08■□□□□ 0.8
USP40-206ENST00000443711 R3HDM1Q15032 1099 aaKnown RBP20.07■□□□□ 0.8
USP40-206ENST00000443711 CLEC4GQ6UXB4 293 aa20.07■□□□□ 0.8
USP40-206ENST00000443711 GIGYF2Q6Y7W6 1299 aaKnown RBP20.07■□□□□ 0.8
USP40-206ENST00000443711 ZNF652Q9Y2D9 606 aa20.07■□□□□ 0.8
USP40-206ENST00000443711 MAP3K2Q9Y2U5 619 aa20.07■□□□□ 0.8
USP40-206ENST00000443711 BCORQ6W2J9 1755 aa20.07■□□□□ 0.8
USP40-206ENST00000443711 ADCY9O60503 1353 aa20.07■□□□□ 0.8
USP40-206ENST00000443711 ARFGEF2Q9Y6D5 1785 aa20.06■□□□□ 0.8
USP40-206ENST00000443711 ATF7IPQ6VMQ6 1270 aa20.06■□□□□ 0.8
USP40-206ENST00000443711 DNAAF4Q8WXU2 420 aa20.06■□□□□ 0.8
USP40-206ENST00000443711 HLFQ16534 295 aa20.05■□□□□ 0.8
USP40-206ENST00000443711 HSP90AB3PQ58FF7 597 aa20.05■□□□□ 0.8
USP40-206ENST00000443711 SLC16A10Q8TF71 515 aa20.05■□□□□ 0.8
USP40-206ENST00000443711 METTL22Q9BUU2 404 aaPredicted RBP20.05■□□□□ 0.8
USP40-206ENST00000443711 SCN7AQ01118 1682 aa20.05■□□□□ 0.8
USP40-206ENST00000443711 F6X3S4 739 aa20.04■□□□□ 0.8
USP40-206ENST00000443711 MS4A1P11836 297 aa20.04■□□□□ 0.8
USP40-206ENST00000443711 GYS1P13807 737 aa20.04■□□□□ 0.8
USP40-206ENST00000443711 NEXNQ0ZGT2 675 aa20.04■□□□□ 0.8
USP40-206ENST00000443711 TCIRG1Q13488 830 aa20.04■□□□□ 0.8
USP40-206ENST00000443711 BCL2L12Q9HB09 334 aa20.04■□□□□ 0.8
USP40-206ENST00000443711 TRIM27P14373 513 aa20.03■□□□□ 0.8
USP40-206ENST00000443711 NLGN1Q8N2Q7 840 aa20.03■□□□□ 0.8
USP40-206ENST00000443711 SUPT16HQ9Y5B9 1047 aaKnown RBP20.03■□□□□ 0.8
USP40-206ENST00000443711 PSDA5PKW4 1024 aaPredicted RBP20.02■□□□□ 0.8
USP40-206ENST00000443711 PLIN1O60240 522 aa20.02■□□□□ 0.8
USP40-206ENST00000443711 RRP1P56182 461 aaKnown RBP20.02■□□□□ 0.8
USP40-206ENST00000443711 SLC4A10Q6U841 1118 aa20.02■□□□□ 0.8
USP40-206ENST00000443711 MYD88Q99836 296 aa20.02■□□□□ 0.8
USP40-206ENST00000443711 ANKRD36CQ5JPF3 1778 aa20.01■□□□□ 0.79
USP40-206ENST00000443711 FKBP8Q14318 412 aa20.01■□□□□ 0.79
USP40-206ENST00000443711 DZIP1LQ8IYY4 767 aaKnown RBP20.01■□□□□ 0.79
USP40-206ENST00000443711 PDGFDQ9GZP0 370 aaPredicted RBP20.01■□□□□ 0.79
USP40-206ENST00000443711 FTSJ3Q8IY81 847 aaKnown RBP20■□□□□ 0.79
USP40-206ENST00000443711 ZNF34Q8IZ26 560 aa20■□□□□ 0.79
USP40-206ENST00000443711 LINS1Q8NG48 757 aa20■□□□□ 0.79
USP40-206ENST00000443711 CLUAP1Q96AJ1 413 aa20■□□□□ 0.79
USP40-206ENST00000443711 NIP7Q9Y221 180 aaKnown RBP eCLIP20■□□□□ 0.79
USP40-206ENST00000443711 CASZ1Q86V15 1759 aa20■□□□□ 0.79
USP40-206ENST00000443711 ATP10DQ9P241 1426 aa20■□□□□ 0.79
USP40-206ENST00000443711 ABCC4O15439 1325 aa20■□□□□ 0.79
USP40-206ENST00000443711 RNF123Q5XPI4 1314 aa20■□□□□ 0.79
USP40-206ENST00000443711 ATP5J2-PTCD1G3V325 749 aa19.99■□□□□ 0.79
USP40-206ENST00000443711 CCT4P50991 539 aaKnown RBP19.99■□□□□ 0.79
USP40-206ENST00000443711 TRIM28Q13263 835 aaKnown RBP19.99■□□□□ 0.79
USP40-206ENST00000443711 PDE3AQ14432 1141 aa19.99■□□□□ 0.79
USP40-206ENST00000443711 BEND3Q5T5X7 828 aa19.99■□□□□ 0.79
USP40-206ENST00000443711 TBC1D9BQ66K14 1250 aa19.99■□□□□ 0.79
USP40-206ENST00000443711 SETDB2Q96T68 719 aa19.99■□□□□ 0.79
USP40-206ENST00000443711 ISCA1Q9BUE6 129 aa19.99■□□□□ 0.79
USP40-206ENST00000443711 SRCIN1Q9C0H9 1055 aa19.99■□□□□ 0.79
USP40-206ENST00000443711 TNNQ9UQP3 1299 aa19.99■□□□□ 0.79
USP40-206ENST00000443711 PXDNLA1KZ92 1463 aa19.99■□□□□ 0.79
USP40-206ENST00000443711 GPTP24298 496 aa19.98■□□□□ 0.79
USP40-206ENST00000443711 PARP10Q53GL7 1025 aa19.98■□□□□ 0.79
USP40-206ENST00000443711 BICDL1Q6ZP65 573 aa19.98■□□□□ 0.79
USP40-206ENST00000443711 AFDNP55196 1824 aaKnown RBP19.97■□□□□ 0.79
USP40-206ENST00000443711 ALDH1L1O75891 902 aa19.97■□□□□ 0.79
USP40-206ENST00000443711 IGKV5-2P06315 115 aa19.97■□□□□ 0.79
USP40-206ENST00000443711 TM4SF1P30408 202 aa19.97■□□□□ 0.79
USP40-206ENST00000443711 NFIXQ14938 502 aa19.97■□□□□ 0.79
USP40-206ENST00000443711 INTS3Q68E01 1043 aaKnown RBP19.97■□□□□ 0.79
USP40-206ENST00000443711 CCDC191Q8NCU4 936 aa19.97■□□□□ 0.79
USP40-206ENST00000443711 NEURL1BA8MQ27 555 aa19.96■□□□□ 0.79
USP40-206ENST00000443711 MSL1Q68DK7 614 aa19.96■□□□□ 0.79
USP40-206ENST00000443711 NLRP10Q86W26 655 aa19.96■□□□□ 0.79
USP40-206ENST00000443711 N4BP2Q86UW6 1770 aaPredicted RBP19.95■□□□□ 0.78
USP40-206ENST00000443711 RLBP1P12271 317 aa19.95■□□□□ 0.78
USP40-206ENST00000443711 CWF19L2Q2TBE0 894 aaKnown RBP19.95■□□□□ 0.78
USP40-206ENST00000443711 PPP1R42Q7Z4L9 355 aa19.95■□□□□ 0.78
USP40-206ENST00000443711 PANK1Q8TE04 598 aa19.95■□□□□ 0.78
USP40-206ENST00000443711 MTFR1LQ9H019 292 aa19.95■□□□□ 0.78
USP40-206ENST00000443711 CWC25Q9NXE8 425 aaPredicted RBP19.95■□□□□ 0.78
USP40-206ENST00000443711 ZBTB7AO95365 584 aa19.94■□□□□ 0.78
USP40-206ENST00000443711 TMEM57Q8N5G2 664 aa19.94■□□□□ 0.78
USP40-206ENST00000443711 UBN2Q6ZU65 1347 aa19.94■□□□□ 0.78
USP40-206ENST00000443711 CARMIL3Q8ND23 1372 aa19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms