RNA–Protein interactions for RNA: ENST00000442234.5

LIG4-203, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 3,982 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-203ENST00000442234 DONSONQ9NYP3 566 aa3.32□□□□□ -1.88
LIG4-203ENST00000442234 DHX29Q7Z478 1369 aaKnown RBP3.32□□□□□ -1.88
LIG4-203ENST00000442234 ADGRF5Q8IZF2 1346 aa3.31□□□□□ -1.88
LIG4-203ENST00000442234 TCP11L2Q8N4U5 519 aa3.31□□□□□ -1.88
LIG4-203ENST00000442234 SIRT1Q96EB6 747 aa3.31□□□□□ -1.88
LIG4-203ENST00000442234 KNSTRNQ9Y448 316 aa3.31□□□□□ -1.88
LIG4-203ENST00000442234 ANKRD30AQ9BXX3 1397 aa3.31□□□□□ -1.88
LIG4-203ENST00000442234 TMEM2Q9UHN6 1383 aa3.31□□□□□ -1.88
LIG4-203ENST00000442234 UGGT1Q9NYU2 1555 aa3.31□□□□□ -1.88
LIG4-203ENST00000442234 QRICH2Q9H0J4 1663 aa3.31□□□□□ -1.88
LIG4-203ENST00000442234 ABCA9Q8IUA7 1624 aa3.31□□□□□ -1.88
LIG4-203ENST00000442234 RIMS2Q9UQ26 1411 aa3.31□□□□□ -1.88
LIG4-203ENST00000442234 TPM3P06753 285 aa3.31□□□□□ -1.88
LIG4-203ENST00000442234 NEUROD2Q15784 382 aa3.31□□□□□ -1.88
LIG4-203ENST00000442234 ZNF710Q8N1W2 664 aa3.31□□□□□ -1.88
LIG4-203ENST00000442234 CCDC191Q8NCU4 936 aa3.31□□□□□ -1.88
LIG4-203ENST00000442234 PUS7Q96PZ0 661 aaKnown RBP3.31□□□□□ -1.88
LIG4-203ENST00000442234 CDK19Q9BWU1 502 aa3.31□□□□□ -1.88
LIG4-203ENST00000442234 NUCKS1Q9H1E3 243 aaKnown RBP3.31□□□□□ -1.88
LIG4-203ENST00000442234 SCAF8Q9UPN6 1271 aaKnown RBP3.31□□□□□ -1.88
LIG4-203ENST00000442234 ZMYM4Q5VZL5 1548 aa3.31□□□□□ -1.88
LIG4-203ENST00000442234 SYCP2Q9BX26 1530 aa3.31□□□□□ -1.88
LIG4-203ENST00000442234 KIAA0232Q92628 1395 aa3.31□□□□□ -1.88
LIG4-203ENST00000442234 NOLC1Q14978 699 aaKnown RBP eCLIP3.31□□□□□ -1.88
LIG4-203ENST00000442234 PDIA6Q15084 440 aa3.31□□□□□ -1.88
LIG4-203ENST00000442234 NLRP13Q86W25 1043 aa3.31□□□□□ -1.88
LIG4-203ENST00000442234 CREBRFQ8IUR6 639 aa3.31□□□□□ -1.88
LIG4-203ENST00000442234 NUDT16Q96DE0 195 aaKnown RBP3.31□□□□□ -1.88
LIG4-203ENST00000442234 SGSM3Q96HU1 749 aa3.31□□□□□ -1.88
LIG4-203ENST00000442234 TBX22Q9Y458 520 aa3.31□□□□□ -1.88
LIG4-203ENST00000442234 ABCC1P33527 1531 aa3.31□□□□□ -1.88
LIG4-203ENST00000442234 TULP2O00295 520 aa3.3□□□□□ -1.88
LIG4-203ENST00000442234 U2SURPO15042 1029 aaKnown RBP3.3□□□□□ -1.88
LIG4-203ENST00000442234 SLFN14P0C7P3 912 aa3.3□□□□□ -1.88
LIG4-203ENST00000442234 MNAT1P51948 309 aa3.3□□□□□ -1.88
LIG4-203ENST00000442234 GYS2P54840 703 aa3.3□□□□□ -1.88
LIG4-203ENST00000442234 TXLNBQ8N3L3 684 aa3.3□□□□□ -1.88
LIG4-203ENST00000442234 GGNBP2Q9H3C7 697 aa3.3□□□□□ -1.88
LIG4-203ENST00000442234 SUDS3Q9H7L9 328 aaPredicted RBP3.3□□□□□ -1.88
LIG4-203ENST00000442234 CPSF2Q9P2I0 782 aaKnown RBP3.3□□□□□ -1.88
LIG4-203ENST00000442234 RNF123Q5XPI4 1314 aa3.3□□□□□ -1.88
LIG4-203ENST00000442234 NEO1Q92859 1461 aa3.3□□□□□ -1.88
LIG4-203ENST00000442234 ARHGAP35Q9NRY4 1499 aa3.3□□□□□ -1.88
LIG4-203ENST00000442234 IPO8O15397 1037 aaKnown RBP3.3□□□□□ -1.88
LIG4-203ENST00000442234 ST18O60284 1047 aa3.3□□□□□ -1.88
LIG4-203ENST00000442234 CT47B1P0C2W7 299 aaPredicted RBP3.3□□□□□ -1.88
LIG4-203ENST00000442234 SOX10P56693 466 aa3.3□□□□□ -1.88
LIG4-203ENST00000442234 KRBA2Q6ZNG9 492 aa3.3□□□□□ -1.88
LIG4-203ENST00000442234 OTUD6BQ8N6M0 293 aa3.3□□□□□ -1.88
LIG4-203ENST00000442234 IRAK4Q9NWZ3 460 aa3.3□□□□□ -1.88
LIG4-203ENST00000442234 ADGRL3Q9HAR2 1447 aa3.3□□□□□ -1.88
LIG4-203ENST00000442234 KIF16BQ96L93 1317 aa3.3□□□□□ -1.88
LIG4-203ENST00000442234 CNTLNQ9NXG0 1405 aa3.3□□□□□ -1.88
LIG4-203ENST00000442234 MYO1CO00159 1063 aa3.3□□□□□ -1.88
LIG4-203ENST00000442234 PPP1R12AO14974 1030 aaPredicted RBP3.3□□□□□ -1.88
LIG4-203ENST00000442234 POLR3GO15318 223 aaPredicted RBP3.3□□□□□ -1.88
LIG4-203ENST00000442234 HSPA5P11021 654 aaKnown RBP3.3□□□□□ -1.88
LIG4-203ENST00000442234 USP8P40818 1118 aa3.3□□□□□ -1.88
LIG4-203ENST00000442234 TPM4P67936 248 aa3.3□□□□□ -1.88
LIG4-203ENST00000442234 IFFO2Q5TF58 517 aa3.3□□□□□ -1.88
LIG4-203ENST00000442234 LEKR1Q6ZMV7 388 aa3.3□□□□□ -1.88
LIG4-203ENST00000442234 CCDC112Q8NEF3 446 aa3.3□□□□□ -1.88
LIG4-203ENST00000442234 DNAAF4Q8WXU2 420 aa3.3□□□□□ -1.88
LIG4-203ENST00000442234 TNPO1Q92973 898 aaKnown RBP3.3□□□□□ -1.88
LIG4-203ENST00000442234 CCDC85AQ96PX6 553 aaPredicted RBP3.3□□□□□ -1.88
LIG4-203ENST00000442234 MAPK8IP3Q9UPT6 1336 aa3.3□□□□□ -1.88
LIG4-203ENST00000442234 CTTNBP2Q8WZ74 1663 aa3.3□□□□□ -1.88
LIG4-203ENST00000442234 MAGI3Q5TCQ9 1506 aa3.3□□□□□ -1.88
LIG4-203ENST00000442234 METP08581 1390 aa3.3□□□□□ -1.88
LIG4-203ENST00000442234 POLR1AO95602 1720 aaPredicted RBP3.3□□□□□ -1.88
LIG4-203ENST00000442234 NEBLO76041 1014 aa3.29□□□□□ -1.88
LIG4-203ENST00000442234 CHRNA5P30532 468 aa3.29□□□□□ -1.88
LIG4-203ENST00000442234 RFC4P35249 363 aa3.29□□□□□ -1.88
LIG4-203ENST00000442234 C20orf194Q5TEA3 1177 aa3.29□□□□□ -1.88
LIG4-203ENST00000442234 AP1ARQ63HQ0 302 aa3.29□□□□□ -1.88
LIG4-203ENST00000442234 MCTP1Q6DN14 999 aa3.29□□□□□ -1.88
LIG4-203ENST00000442234 ZNF687Q8N1G0 1237 aa3.29□□□□□ -1.88
LIG4-203ENST00000442234 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP3.29□□□□□ -1.88
LIG4-203ENST00000442234 EFCAB5A4FU69 1503 aa3.29□□□□□ -1.88
LIG4-203ENST00000442234 RAB3GAP2Q9H2M9 1393 aa3.29□□□□□ -1.88
LIG4-203ENST00000442234 RGS12O14924 1447 aa3.29□□□□□ -1.88
LIG4-203ENST00000442234 SCAF11Q99590 1463 aaKnown RBP3.29□□□□□ -1.88
LIG4-203ENST00000442234 IPO7O95373 1038 aaKnown RBP3.29□□□□□ -1.88
LIG4-203ENST00000442234 GCP02774 474 aa3.29□□□□□ -1.88
LIG4-203ENST00000442234 TPM1P09493 284 aa3.29□□□□□ -1.88
LIG4-203ENST00000442234 RDXP35241 583 aaKnown RBP3.29□□□□□ -1.88
LIG4-203ENST00000442234 NAP1L1P55209 391 aaKnown RBP3.29□□□□□ -1.88
LIG4-203ENST00000442234 ZRSR1Q15695 479 aaKnown RBP3.29□□□□□ -1.88
LIG4-203ENST00000442234 SYT10Q6XYQ8 523 aa3.29□□□□□ -1.88
LIG4-203ENST00000442234 NEK11Q8NG66 645 aa3.29□□□□□ -1.88
LIG4-203ENST00000442234 ANTXR1Q9H6X2 564 aa3.29□□□□□ -1.88
LIG4-203ENST00000442234 C1orf115Q9H7X2 142 aa3.29□□□□□ -1.88
LIG4-203ENST00000442234 LRRFIP2Q9Y608 721 aaKnown RBP3.29□□□□□ -1.88
LIG4-203ENST00000442234 TRIM66O15016 1216 aa3.29□□□□□ -1.88
LIG4-203ENST00000442234 CCP110O43303 1012 aa3.29□□□□□ -1.88
LIG4-203ENST00000442234 MMP10P09238 476 aa3.29□□□□□ -1.88
LIG4-203ENST00000442234 NOP2P46087 812 aaKnown RBP3.29□□□□□ -1.88
LIG4-203ENST00000442234 RTF1Q92541 710 aaKnown RBP3.29□□□□□ -1.88
LIG4-203ENST00000442234 LARP6Q9BRS8 491 aaKnown RBP3.29□□□□□ -1.88
LIG4-203ENST00000442234 MED4Q9NPJ6 270 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms