RNA–Protein interactions for RNA: ENST00000429456.1

LINC01238-203, Transcript of long intergenic non-protein coding RNA 1238, humanhuman

TSL 2 BASIC

Gene LINC01238, Length 2,170 nt, Biotype lincRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01238-203ENST00000429456 MPRIPQ6WCQ1 1025 aa13.85□□□□□ -0.19
LINC01238-203ENST00000429456 CLASRPQ8N2M8 674 aaKnown RBP13.85□□□□□ -0.19
LINC01238-203ENST00000429456 SPG7Q9UQ90 795 aa13.85□□□□□ -0.19
LINC01238-203ENST00000429456 OVOS2A0A0G2JMS6 1433 aa13.84□□□□□ -0.19
LINC01238-203ENST00000429456 NCAPD2Q15021 1401 aa13.84□□□□□ -0.19
LINC01238-203ENST00000429456 RRP9O43818 475 aaKnown RBP13.84□□□□□ -0.19
LINC01238-203ENST00000429456 ZSCAN22P10073 491 aaPredicted RBP13.84□□□□□ -0.19
LINC01238-203ENST00000429456 TERF1P54274 439 aa13.84□□□□□ -0.19
LINC01238-203ENST00000429456 AMOTQ4VCS5 1084 aa13.84□□□□□ -0.19
LINC01238-203ENST00000429456 RNF214Q8ND24 703 aa13.84□□□□□ -0.19
LINC01238-203ENST00000429456 RUFY2Q8WXA3 655 aa13.84□□□□□ -0.19
LINC01238-203ENST00000429456 LRRC59Q96AG4 307 aaKnown RBP13.84□□□□□ -0.19
LINC01238-203ENST00000429456 CCDC39Q9UFE4 941 aa13.84□□□□□ -0.19
LINC01238-203ENST00000429456 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.84□□□□□ -0.19
LINC01238-203ENST00000429456 HEG1Q9ULI3 1381 aa13.84□□□□□ -0.19
LINC01238-203ENST00000429456 KCNB2Q92953 911 aa13.83□□□□□ -0.19
LINC01238-203ENST00000429456 DIAPH3Q9NSV4 1193 aa13.83□□□□□ -0.19
LINC01238-203ENST00000429456 ECHDC1Q9NTX5 307 aa13.83□□□□□ -0.19
LINC01238-203ENST00000429456 MAP3K2Q9Y2U5 619 aa13.83□□□□□ -0.19
LINC01238-203ENST00000429456 STX6O43752 255 aa13.83□□□□□ -0.2
LINC01238-203ENST00000429456 KSR2Q6VAB6 950 aa13.83□□□□□ -0.2
LINC01238-203ENST00000429456 ERC1Q8IUD2 1116 aa13.83□□□□□ -0.2
LINC01238-203ENST00000429456 PXDNQ92626 1479 aa13.83□□□□□ -0.2
LINC01238-203ENST00000429456 GIGYF1O75420 1035 aaPredicted RBP13.82□□□□□ -0.2
LINC01238-203ENST00000429456 SYT1P21579 422 aa13.82□□□□□ -0.2
LINC01238-203ENST00000429456 PTH1RQ03431 593 aa13.82□□□□□ -0.2
LINC01238-203ENST00000429456 PSME1Q06323 249 aa13.82□□□□□ -0.2
LINC01238-203ENST00000429456 HSP90AA2PQ14568 343 aaPredicted RBP13.82□□□□□ -0.2
LINC01238-203ENST00000429456 HYPKQ9NX55 129 aa13.82□□□□□ -0.2
LINC01238-203ENST00000429456 C9orf78Q9NZ63 289 aaPredicted RBP13.82□□□□□ -0.2
LINC01238-203ENST00000429456 HDAC5Q9UQL6 1122 aa13.82□□□□□ -0.2
LINC01238-203ENST00000429456 CNPY2Q9Y2B0 182 aa13.82□□□□□ -0.2
LINC01238-203ENST00000429456 ZBTB7CA1YPR0 619 aa13.82□□□□□ -0.2
LINC01238-203ENST00000429456 CASTP20810 708 aaKnown RBP13.82□□□□□ -0.2
LINC01238-203ENST00000429456 PROSER3Q2NL68 480 aa13.82□□□□□ -0.2
LINC01238-203ENST00000429456 VPS53Q5VIR6 699 aa13.82□□□□□ -0.2
LINC01238-203ENST00000429456 GPATCH3Q96I76 525 aa13.82□□□□□ -0.2
LINC01238-203ENST00000429456 TM6SF1Q9BZW5 370 aa13.82□□□□□ -0.2
LINC01238-203ENST00000429456 SMC3Q9UQE7 1217 aa13.82□□□□□ -0.2
LINC01238-203ENST00000429456 LARGE1O95461 756 aa13.81□□□□□ -0.2
LINC01238-203ENST00000429456 F13A1P00488 732 aa13.81□□□□□ -0.2
LINC01238-203ENST00000429456 CPA1P15085 419 aa13.81□□□□□ -0.2
LINC01238-203ENST00000429456 C1orf141Q5JVX7 400 aa13.81□□□□□ -0.2
LINC01238-203ENST00000429456 CCDC183Q5T5S1 534 aa13.81□□□□□ -0.2
LINC01238-203ENST00000429456 EVI5LQ96CN4 794 aa13.81□□□□□ -0.2
LINC01238-203ENST00000429456 LARP6Q9BRS8 491 aaKnown RBP13.81□□□□□ -0.2
LINC01238-203ENST00000429456 ZSWIM6Q9HCJ5 1215 aa13.81□□□□□ -0.2
LINC01238-203ENST00000429456 PA2G4Q9UQ80 394 aaKnown RBP13.81□□□□□ -0.2
LINC01238-203ENST00000429456 SIPA1L3O60292 1781 aaPredicted RBP13.81□□□□□ -0.2
LINC01238-203ENST00000429456 IFIT2P09913 472 aaKnown RBP13.81□□□□□ -0.2
LINC01238-203ENST00000429456 UVSSAQ2YD98 709 aa13.81□□□□□ -0.2
LINC01238-203ENST00000429456 ESCO1Q5FWF5 840 aa13.81□□□□□ -0.2
LINC01238-203ENST00000429456 FAM184AQ8NB25 1140 aa13.81□□□□□ -0.2
LINC01238-203ENST00000429456 UBE2HP62256 183 aa13.8□□□□□ -0.2
LINC01238-203ENST00000429456 ADCK5Q3MIX3 580 aa13.8□□□□□ -0.2
LINC01238-203ENST00000429456 PRPF40BQ6NWY9 871 aaKnown RBP13.8□□□□□ -0.2
LINC01238-203ENST00000429456 ARHGEF25Q86VW2 580 aa13.8□□□□□ -0.2
LINC01238-203ENST00000429456 ZSCAN31Q96LW9 406 aaPredicted RBP13.8□□□□□ -0.2
LINC01238-203ENST00000429456 JAKMIP1Q96N16 626 aaKnown RBP13.8□□□□□ -0.2
LINC01238-203ENST00000429456 PDRG1Q9NUG6 133 aa13.8□□□□□ -0.2
LINC01238-203ENST00000429456 UTYO14607 1347 aa13.8□□□□□ -0.2
LINC01238-203ENST00000429456 SLIT3O75094 1523 aa13.8□□□□□ -0.2
LINC01238-203ENST00000429456 LETM1O95202 739 aaPredicted RBP13.79□□□□□ -0.2
LINC01238-203ENST00000429456 XPCQ01831 940 aaPredicted RBP13.79□□□□□ -0.2
LINC01238-203ENST00000429456 NECTIN1Q15223 517 aa13.79□□□□□ -0.2
LINC01238-203ENST00000429456 CWF19L2Q2TBE0 894 aaKnown RBP13.79□□□□□ -0.2
LINC01238-203ENST00000429456 SH2B1Q9NRF2 756 aaPredicted RBP13.79□□□□□ -0.2
LINC01238-203ENST00000429456 ATP6V1DQ9Y5K8 247 aa13.79□□□□□ -0.2
LINC01238-203ENST00000429456 CAMTA1Q9Y6Y1 1673 aa13.79□□□□□ -0.2
LINC01238-203ENST00000429456 AACSQ86V21 672 aa13.79□□□□□ -0.2
LINC01238-203ENST00000429456 CCDC83Q8IWF9 413 aa13.79□□□□□ -0.2
LINC01238-203ENST00000429456 LINS1Q8NG48 757 aa13.79□□□□□ -0.2
LINC01238-203ENST00000429456 RBM33Q96EV2 1170 aaKnown RBP13.79□□□□□ -0.2
LINC01238-203ENST00000429456 KAZALD1Q96I82 304 aa13.79□□□□□ -0.2
LINC01238-203ENST00000429456 CYP46A1Q9Y6A2 500 aa13.79□□□□□ -0.2
LINC01238-203ENST00000429456 CCDC171Q6TFL3 1326 aa13.79□□□□□ -0.2
LINC01238-203ENST00000429456 LMTK3Q96Q04 1460 aa13.78□□□□□ -0.2
LINC01238-203ENST00000429456 PRAMEF22A3QJZ6 481 aa13.78□□□□□ -0.2
LINC01238-203ENST00000429456 GCP02774 474 aa13.78□□□□□ -0.2
LINC01238-203ENST00000429456 PDIA4P13667 645 aaKnown RBP13.78□□□□□ -0.2
LINC01238-203ENST00000429456 GJB2P29033 226 aa13.78□□□□□ -0.2
LINC01238-203ENST00000429456 CSPP1Q1MSJ5 1256 aa13.78□□□□□ -0.2
LINC01238-203ENST00000429456 SUCLG2Q96I99 432 aa13.78□□□□□ -0.2
LINC01238-203ENST00000429456 MTMR6Q9Y217 621 aa13.78□□□□□ -0.2
LINC01238-203ENST00000429456 ADAMTS7Q9UKP4 1686 aa13.78□□□□□ -0.2
LINC01238-203ENST00000429456 GRM8O00222 908 aa13.78□□□□□ -0.2
LINC01238-203ENST00000429456 SASH1O94885 1247 aa13.78□□□□□ -0.2
LINC01238-203ENST00000429456 ST3GAL1Q11201 340 aa13.78□□□□□ -0.2
LINC01238-203ENST00000429456 SNRKQ9NRH2 765 aa13.78□□□□□ -0.2
LINC01238-203ENST00000429456 R3HCC1Q9Y3T6 440 aaKnown RBP13.78□□□□□ -0.2
LINC01238-203ENST00000429456 HIP1O00291 1037 aa13.77□□□□□ -0.21
LINC01238-203ENST00000429456 PDE4CQ08493 712 aa13.77□□□□□ -0.21
LINC01238-203ENST00000429456 ANKLE2Q86XL3 938 aa13.77□□□□□ -0.21
LINC01238-203ENST00000429456 ANKRD24Q8TF21 1146 aa13.77□□□□□ -0.21
LINC01238-203ENST00000429456 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.77□□□□□ -0.21
LINC01238-203ENST00000429456 CREB3L3Q68CJ9 461 aa13.76□□□□□ -0.21
LINC01238-203ENST00000429456 MAP4K1Q92918 833 aa13.76□□□□□ -0.21
LINC01238-203ENST00000429456 EAF2Q96CJ1 260 aaPredicted RBP13.76□□□□□ -0.21
LINC01238-203ENST00000429456 BICC1Q9H694 974 aaKnown RBP13.76□□□□□ -0.21
LINC01238-203ENST00000429456 DDX21Q9NR30 783 aaKnown RBP eCLIP13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms