RNA–Protein interactions for RNA: ENST00000424804.6

VRK3-203, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,061 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-203ENST00000424804 C21orf2O43822 256 aa17.27■□□□□ 0.36
VRK3-203ENST00000424804 SRGNP10124 158 aa17.27■□□□□ 0.36
VRK3-203ENST00000424804 HTRA3P83110 453 aa17.27■□□□□ 0.36
VRK3-203ENST00000424804 FSTL1Q12841 308 aa17.27■□□□□ 0.36
VRK3-203ENST00000424804 TAF7Q15545 349 aaPredicted RBP17.27■□□□□ 0.36
VRK3-203ENST00000424804 CLEC4GQ6UXB4 293 aa17.27■□□□□ 0.36
VRK3-203ENST00000424804 C7orf43Q8WVR3 580 aa17.27■□□□□ 0.36
VRK3-203ENST00000424804 RTF1Q92541 710 aaKnown RBP17.27■□□□□ 0.36
VRK3-203ENST00000424804 ZNF622Q969S3 477 aaKnown RBP eCLIP17.27■□□□□ 0.36
VRK3-203ENST00000424804 KDM3BQ7LBC6 1761 aa17.27■□□□□ 0.35
VRK3-203ENST00000424804 ARFGEF2Q9Y6D5 1785 aa17.27■□□□□ 0.35
VRK3-203ENST00000424804 KLRG2A4D1S0 409 aaPredicted RBP17.26■□□□□ 0.35
VRK3-203ENST00000424804 CACNA1SQ13698 1873 aa17.26■□□□□ 0.35
VRK3-203ENST00000424804 IFFO2Q5TF58 517 aa17.25■□□□□ 0.35
VRK3-203ENST00000424804 STYK1Q6J9G0 422 aa17.25■□□□□ 0.35
VRK3-203ENST00000424804 CNBD1Q8NA66 436 aa17.25■□□□□ 0.35
VRK3-203ENST00000424804 RGL2O15211 777 aa17.24■□□□□ 0.35
VRK3-203ENST00000424804 HLFQ16534 295 aa17.24■□□□□ 0.35
VRK3-203ENST00000424804 ZNF219Q9P2Y4 722 aaPredicted RBP17.24■□□□□ 0.35
VRK3-203ENST00000424804 LTBP3Q9NS15 1303 aa17.23■□□□□ 0.35
VRK3-203ENST00000424804 LAMB4A4D0S4 1761 aa17.23■□□□□ 0.35
VRK3-203ENST00000424804 VEGFAP15692 232 aaPredicted RBP17.22■□□□□ 0.35
VRK3-203ENST00000424804 EIF4A1P60842 406 aaKnown RBP17.22■□□□□ 0.35
VRK3-203ENST00000424804 PRPF40BQ6NWY9 871 aaKnown RBP17.22■□□□□ 0.35
VRK3-203ENST00000424804 C16orf71Q8IYS4 520 aaPredicted RBP17.22■□□□□ 0.35
VRK3-203ENST00000424804 MASTLQ96GX5 879 aa17.22■□□□□ 0.35
VRK3-203ENST00000424804 THUMPD2Q9BTF0 503 aaKnown RBP17.22■□□□□ 0.35
VRK3-203ENST00000424804 PCNTO95613 3336 aa17.22■□□□□ 0.35
VRK3-203ENST00000424804 NUP98P52948 1817 aa17.21■□□□□ 0.35
VRK3-203ENST00000424804 NFE2L2Q16236 605 aa17.21■□□□□ 0.35
VRK3-203ENST00000424804 CNKSR1Q969H4 720 aa17.21■□□□□ 0.35
VRK3-203ENST00000424804 ST5P78524 1137 aa17.2■□□□□ 0.34
VRK3-203ENST00000424804 NBPF5PQ86XG9 351 aaPredicted RBP17.2■□□□□ 0.34
VRK3-203ENST00000424804 NIP7Q9Y221 180 aaKnown RBP eCLIP17.2■□□□□ 0.34
VRK3-203ENST00000424804 NPM2Q86SE8 214 aaKnown RBP17.19■□□□□ 0.34
VRK3-203ENST00000424804 JMYQ8N9B5 988 aa17.19■□□□□ 0.34
VRK3-203ENST00000424804 SMC1BQ8NDV3 1235 aa17.19■□□□□ 0.34
VRK3-203ENST00000424804 KLRG1Q96E93 195 aa17.19■□□□□ 0.34
VRK3-203ENST00000424804 ERFEQ4G0M1 354 aa17.18■□□□□ 0.34
VRK3-203ENST00000424804 OLFM4Q6UX06 510 aa17.18■□□□□ 0.34
VRK3-203ENST00000424804 TTLL7Q6ZT98 887 aa17.18■□□□□ 0.34
VRK3-203ENST00000424804 LRP10Q7Z4F1 713 aa17.18■□□□□ 0.34
VRK3-203ENST00000424804 PNISRQ8TF01 805 aaKnown RBP17.18■□□□□ 0.34
VRK3-203ENST00000424804 ZNF652Q9Y2D9 606 aa17.18■□□□□ 0.34
VRK3-203ENST00000424804 SNED1Q8TER0 1413 aa17.18■□□□□ 0.34
VRK3-203ENST00000424804 NPR1P16066 1061 aa17.17■□□□□ 0.34
VRK3-203ENST00000424804 TPTE2Q6XPS3 522 aa17.17■□□□□ 0.34
VRK3-203ENST00000424804 TAOK3Q9H2K8 898 aa17.17■□□□□ 0.34
VRK3-203ENST00000424804 ERVV-1B6SEH8 477 aa17.16■□□□□ 0.34
VRK3-203ENST00000424804 DDNO94850 711 aaPredicted RBP17.16■□□□□ 0.34
VRK3-203ENST00000424804 ABCC12Q96J65 1359 aa17.15■□□□□ 0.34
VRK3-203ENST00000424804 FAM177BA6PVY3 158 aa17.15■□□□□ 0.34
VRK3-203ENST00000424804 PDIA6Q15084 440 aa17.15■□□□□ 0.34
VRK3-203ENST00000424804 MAP3K15Q6ZN16 1313 aa17.15■□□□□ 0.34
VRK3-203ENST00000424804 POTEIP0CG38 1075 aa17.14■□□□□ 0.33
VRK3-203ENST00000424804 POTEJP0CG39 1038 aa17.14■□□□□ 0.33
VRK3-203ENST00000424804 CRY2Q49AN0 593 aa17.14■□□□□ 0.33
VRK3-203ENST00000424804 SOGA3Q5TF21 947 aa17.14■□□□□ 0.33
VRK3-203ENST00000424804 DPY19L2Q6NUT2 758 aa17.14■□□□□ 0.33
VRK3-203ENST00000424804 NGEFQ8N5V2 710 aa17.14■□□□□ 0.33
VRK3-203ENST00000424804 RRP7AQ9Y3A4 280 aaKnown RBP17.14■□□□□ 0.33
VRK3-203ENST00000424804 UBN2Q6ZU65 1347 aa17.14■□□□□ 0.33
VRK3-203ENST00000424804 NPHP1O15259 732 aa17.13■□□□□ 0.33
VRK3-203ENST00000424804 SLC51AQ86UW1 340 aa17.13■□□□□ 0.33
VRK3-203ENST00000424804 NUTM1Q86Y26 1132 aa17.13■□□□□ 0.33
VRK3-203ENST00000424804 ZNF34Q8IZ26 560 aa17.13■□□□□ 0.33
VRK3-203ENST00000424804 FKBP4Q02790 459 aaKnown RBP eCLIP17.12■□□□□ 0.33
VRK3-203ENST00000424804 CCDC93Q567U6 631 aa17.12■□□□□ 0.33
VRK3-203ENST00000424804 SUSD4Q5VX71 490 aa17.12■□□□□ 0.33
VRK3-203ENST00000424804 MYL6BP14649 208 aa17.11■□□□□ 0.33
VRK3-203ENST00000424804 RALBP1Q15311 655 aa17.11■□□□□ 0.33
VRK3-203ENST00000424804 L3MBTL3Q96JM7 780 aaPredicted RBP17.11■□□□□ 0.33
VRK3-203ENST00000424804 ZNF277Q9NRM2 450 aaPredicted RBP17.11■□□□□ 0.33
VRK3-203ENST00000424804 ZNF316A6NFI3 1004 aaPredicted RBP17.1■□□□□ 0.33
VRK3-203ENST00000424804 HOXA10P31260 410 aaPredicted RBP17.1■□□□□ 0.33
VRK3-203ENST00000424804 TMPOP42166 694 aaKnown RBP17.1■□□□□ 0.33
VRK3-203ENST00000424804 RIPK4P57078 832 aa17.1■□□□□ 0.33
VRK3-203ENST00000424804 PROSER3Q2NL68 480 aa17.1■□□□□ 0.33
VRK3-203ENST00000424804 GIGYF2Q6Y7W6 1299 aaKnown RBP17.1■□□□□ 0.33
VRK3-203ENST00000424804 C3orf67Q6ZVT6 689 aa17.1■□□□□ 0.33
VRK3-203ENST00000424804 ZBTB3Q9H5J0 574 aa17.1■□□□□ 0.33
VRK3-203ENST00000424804 ZNF541Q9H0D2 1346 aa17.1■□□□□ 0.33
VRK3-203ENST00000424804 RIC1Q4ADV7 1423 aa17.1■□□□□ 0.33
VRK3-203ENST00000424804 COL4A5P29400 1685 aa17.1■□□□□ 0.33
VRK3-203ENST00000424804 SCN4AP35499 1836 aa17.1■□□□□ 0.33
VRK3-203ENST00000424804 NTSR2O95665 410 aa17.09■□□□□ 0.33
VRK3-203ENST00000424804 NEFMP07197 916 aa17.09■□□□□ 0.33
VRK3-203ENST00000424804 GPTP24298 496 aa17.09■□□□□ 0.33
VRK3-203ENST00000424804 ALDH1B1P30837 517 aa17.09■□□□□ 0.33
VRK3-203ENST00000424804 PNNQ9H307 717 aaKnown RBP17.09■□□□□ 0.33
VRK3-203ENST00000424804 ERBB4Q15303 1308 aa17.09■□□□□ 0.33
VRK3-203ENST00000424804 IBTKQ9P2D0 1353 aaPredicted RBP17.09■□□□□ 0.33
VRK3-203ENST00000424804 MAPK8IP3Q9UPT6 1336 aa17.08■□□□□ 0.32
VRK3-203ENST00000424804 FZD9O00144 591 aa17.08■□□□□ 0.32
VRK3-203ENST00000424804 CHADLQ6NUI6 762 aa17.08■□□□□ 0.32
VRK3-203ENST00000424804 RTKN2Q8IZC4 609 aa17.08■□□□□ 0.32
VRK3-203ENST00000424804 SYNE4Q8N205 404 aa17.08■□□□□ 0.32
VRK3-203ENST00000424804 NYXQ9GZU5 481 aa17.08■□□□□ 0.32
VRK3-203ENST00000424804 BABAM1Q9NWV8 329 aa17.08■□□□□ 0.32
VRK3-203ENST00000424804 TSPYL4Q9UJ04 414 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms