RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 KINO60870 393 aaKnown RBP3.95□□□□□ -1.78
SYNE1-212ENST00000423061 TRDNQ13061 729 aa3.95□□□□□ -1.78
SYNE1-212ENST00000423061 CCDC30Q5VVM6 783 aa3.95□□□□□ -1.78
SYNE1-212ENST00000423061 GCC2Q8IWJ2 1684 aa3.95□□□□□ -1.78
SYNE1-212ENST00000423061 CDC45O75419 566 aa3.95□□□□□ -1.78
SYNE1-212ENST00000423061 GNG11P61952 73 aa3.95□□□□□ -1.78
SYNE1-212ENST00000423061 CCDC121Q6ZUS5 278 aa3.95□□□□□ -1.78
SYNE1-212ENST00000423061 MICAL1Q8TDZ2 1067 aa3.95□□□□□ -1.78
SYNE1-212ENST00000423061 IQGAP2Q13576 1575 aa3.95□□□□□ -1.78
SYNE1-212ENST00000423061 TMC6Q7Z403 805 aa3.95□□□□□ -1.78
SYNE1-212ENST00000423061 KIAA1524Q8TCG1 905 aa3.95□□□□□ -1.78
SYNE1-212ENST00000423061 MAPKBP1O60336 1514 aa3.95□□□□□ -1.78
SYNE1-212ENST00000423061 CCDC141Q6ZP82 1450 aa3.95□□□□□ -1.78
SYNE1-212ENST00000423061 RWDD2BP57060 319 aa3.95□□□□□ -1.78
SYNE1-212ENST00000423061 USP4Q13107 963 aa3.95□□□□□ -1.78
SYNE1-212ENST00000423061 U2AF1L5P0DN76 240 aaPredicted RBP3.95□□□□□ -1.78
SYNE1-212ENST00000423061 U2AF1Q01081 240 aaKnown RBP eCLIP3.95□□□□□ -1.78
SYNE1-212ENST00000423061 TADA2BQ86TJ2 420 aa3.95□□□□□ -1.78
SYNE1-212ENST00000423061 SHTN1A0MZ66 631 aa3.95□□□□□ -1.78
SYNE1-212ENST00000423061 ZNF189O75820 626 aaPredicted RBP3.95□□□□□ -1.78
SYNE1-212ENST00000423061 RRP12Q5JTH9 1297 aaKnown RBP3.95□□□□□ -1.78
SYNE1-212ENST00000423061 JMYQ8N9B5 988 aa3.95□□□□□ -1.78
SYNE1-212ENST00000423061 CCDC69A6NI79 296 aa3.95□□□□□ -1.78
SYNE1-212ENST00000423061 EVCP57679 992 aa3.95□□□□□ -1.78
SYNE1-212ENST00000423061 PUF60Q9UHX1 559 aaKnown RBP3.95□□□□□ -1.78
SYNE1-212ENST00000423061 CNPY2Q9Y2B0 182 aa3.95□□□□□ -1.78
SYNE1-212ENST00000423061 TBC1D9Q6ZT07 1266 aa3.95□□□□□ -1.78
SYNE1-212ENST00000423061 IQCA1Q86XH1 822 aa3.95□□□□□ -1.78
SYNE1-212ENST00000423061 BICD2Q8TD16 824 aa3.95□□□□□ -1.78
SYNE1-212ENST00000423061 EPC1Q9H2F5 836 aa3.95□□□□□ -1.78
SYNE1-212ENST00000423061 AQRO60306 1485 aaKnown RBP eCLIP3.95□□□□□ -1.78
SYNE1-212ENST00000423061 CLCN6P51797 869 aa3.95□□□□□ -1.78
SYNE1-212ENST00000423061 PPP2R3AQ06190 1150 aa3.95□□□□□ -1.78
SYNE1-212ENST00000423061 ADCY2Q08462 1091 aa3.95□□□□□ -1.78
SYNE1-212ENST00000423061 SDF4Q9BRK5 362 aa3.95□□□□□ -1.78
SYNE1-212ENST00000423061 LUZP1Q86V48 1076 aa3.95□□□□□ -1.78
SYNE1-212ENST00000423061 CAGE1Q8TC20 777 aa3.95□□□□□ -1.78
SYNE1-212ENST00000423061 RHOXF2BP0C7M4 288 aa3.95□□□□□ -1.78
SYNE1-212ENST00000423061 MPHOSPH9Q99550 1183 aa3.95□□□□□ -1.78
SYNE1-212ENST00000423061 RHOXF2Q9BQY4 288 aa3.95□□□□□ -1.78
SYNE1-212ENST00000423061 SPDL1Q96EA4 605 aa3.95□□□□□ -1.78
SYNE1-212ENST00000423061 TFIP11Q9UBB9 837 aaKnown RBP3.95□□□□□ -1.78
SYNE1-212ENST00000423061 UTP18Q9Y5J1 556 aaKnown RBP eCLIP3.95□□□□□ -1.78
SYNE1-212ENST00000423061 CD2BP2O95400 341 aaKnown RBP3.94□□□□□ -1.78
SYNE1-212ENST00000423061 TRIM4Q9C037 500 aa3.94□□□□□ -1.78
SYNE1-212ENST00000423061 NAT10Q9H0A0 1025 aaKnown RBP3.94□□□□□ -1.78
SYNE1-212ENST00000423061 ITFG2Q969R8 447 aa3.94□□□□□ -1.78
SYNE1-212ENST00000423061 CCT2P78371 535 aaKnown RBP3.94□□□□□ -1.78
SYNE1-212ENST00000423061 HDAC1Q13547 482 aaPredicted RBP3.94□□□□□ -1.78
SYNE1-212ENST00000423061 KCNF1Q9H3M0 494 aa3.94□□□□□ -1.78
SYNE1-212ENST00000423061 ZEB2O60315 1214 aa3.94□□□□□ -1.78
SYNE1-212ENST00000423061 TBC1D22AQ8WUA7 517 aa3.94□□□□□ -1.78
SYNE1-212ENST00000423061 CHCHD3Q9NX63 227 aaKnown RBP3.94□□□□□ -1.78
SYNE1-212ENST00000423061 UBAP1Q9NZ09 502 aa3.94□□□□□ -1.78
SYNE1-212ENST00000423061 ZNF428Q96B54 188 aa3.94□□□□□ -1.78
SYNE1-212ENST00000423061 ATG3Q9NT62 314 aa3.94□□□□□ -1.78
SYNE1-212ENST00000423061 SMC3Q9UQE7 1217 aa3.94□□□□□ -1.78
SYNE1-212ENST00000423061 ATRIPQ8WXE1 791 aa3.94□□□□□ -1.78
SYNE1-212ENST00000423061 BICD1Q96G01 975 aa3.94□□□□□ -1.78
SYNE1-212ENST00000423061 GAPVD1Q14C86 1478 aa3.94□□□□□ -1.78
SYNE1-212ENST00000423061 hCG_2014768A0A024R1R8 64 aa3.94□□□□□ -1.78
SYNE1-212ENST00000423061 MAP3K11Q16584 847 aa3.94□□□□□ -1.78
SYNE1-212ENST00000423061 C1orf115Q9H7X2 142 aa3.94□□□□□ -1.78
SYNE1-212ENST00000423061 ORC3Q9UBD5 711 aaPredicted RBP3.94□□□□□ -1.78
SYNE1-212ENST00000423061 CCDC171Q6TFL3 1326 aa3.94□□□□□ -1.78
SYNE1-212ENST00000423061 SPDYE1Q8NFV5 336 aaPredicted RBP3.94□□□□□ -1.78
SYNE1-212ENST00000423061 RSRC1Q96IZ7 334 aaKnown RBP3.94□□□□□ -1.78
SYNE1-212ENST00000423061 DNMBPQ6XZF7 1577 aa3.94□□□□□ -1.78
SYNE1-212ENST00000423061 GDAP1L1Q96MZ0 367 aa3.94□□□□□ -1.78
SYNE1-212ENST00000423061 PFDN1O60925 122 aa3.94□□□□□ -1.78
SYNE1-212ENST00000423061 ERLIN1O75477 346 aa3.94□□□□□ -1.78
SYNE1-212ENST00000423061 ZNHIT6Q9NWK9 470 aaKnown RBP3.94□□□□□ -1.78
SYNE1-212ENST00000423061 DZIP1Q86YF9 867 aaKnown RBP3.94□□□□□ -1.78
SYNE1-212ENST00000423061 B4GALNT2Q8NHY0 566 aa3.94□□□□□ -1.78
SYNE1-212ENST00000423061 BUB1BO60566 1050 aaPredicted RBP3.94□□□□□ -1.78
SYNE1-212ENST00000423061 CTNNBL1Q8WYA6 563 aaPredicted RBP3.94□□□□□ -1.78
SYNE1-212ENST00000423061 SAAL1Q96ER3 474 aa3.94□□□□□ -1.78
SYNE1-212ENST00000423061 SYCP1Q15431 976 aa3.94□□□□□ -1.78
SYNE1-212ENST00000423061 HDXQ7Z353 690 aa3.94□□□□□ -1.78
SYNE1-212ENST00000423061 ADAM21Q9UKJ8 722 aa3.94□□□□□ -1.78
SYNE1-212ENST00000423061 SMIM24O75264 130 aa3.94□□□□□ -1.78
SYNE1-212ENST00000423061 B4GALNT4Q76KP1 1039 aa3.94□□□□□ -1.78
SYNE1-212ENST00000423061 PNMA8AQ86V59 439 aaPredicted RBP3.94□□□□□ -1.78
SYNE1-212ENST00000423061 EFCAB13Q8IY85 973 aa3.94□□□□□ -1.78
SYNE1-212ENST00000423061 NUP62CLQ9H1M0 184 aa3.94□□□□□ -1.78
SYNE1-212ENST00000423061 DYTNA2CJ06 578 aa3.94□□□□□ -1.78
SYNE1-212ENST00000423061 EME2A4GXA9 379 aaPredicted RBP3.94□□□□□ -1.78
SYNE1-212ENST00000423061 CTIFO43310 598 aaKnown RBP3.94□□□□□ -1.78
SYNE1-212ENST00000423061 CCDC189A1A4V9 331 aa3.94□□□□□ -1.78
SYNE1-212ENST00000423061 FKBP15Q5T1M5 1219 aa3.94□□□□□ -1.78
SYNE1-212ENST00000423061 DUSP27Q5VZP5 1158 aa3.94□□□□□ -1.78
SYNE1-212ENST00000423061 NSFL1CQ9UNZ2 370 aaKnown RBP3.94□□□□□ -1.78
SYNE1-212ENST00000423061 FHOD1Q9Y613 1164 aa3.94□□□□□ -1.78
SYNE1-212ENST00000423061 LRRFIP1Q32MZ4 808 aaKnown RBP3.94□□□□□ -1.78
SYNE1-212ENST00000423061 TACO1Q9BSH4 297 aaKnown RBP3.94□□□□□ -1.78
SYNE1-212ENST00000423061 NESP48681 1621 aa3.94□□□□□ -1.78
SYNE1-212ENST00000423061 PLA2G4AP47712 749 aa3.93□□□□□ -1.78
SYNE1-212ENST00000423061 IMMTQ16891 758 aaKnown RBP3.93□□□□□ -1.78
SYNE1-212ENST00000423061 LRRC23Q53EV4 343 aaPredicted RBP3.93□□□□□ -1.78
SYNE1-212ENST00000423061 TMCO4Q5TGY1 634 aa3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms