RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 TNMDQ9H2S6 317 aa12.71□□□□□ -0.38
USP54-204ENST00000422491 RGPD1P0DJD0 1748 aa12.71□□□□□ -0.38
USP54-204ENST00000422491 FLIIQ13045 1269 aa12.7□□□□□ -0.38
USP54-204ENST00000422491 SSH3Q8TE77 659 aa12.7□□□□□ -0.38
USP54-204ENST00000422491 DACT1Q9NYF0 836 aa12.7□□□□□ -0.38
USP54-204ENST00000422491 CHMP3Q9Y3E7 222 aa12.7□□□□□ -0.38
USP54-204ENST00000422491 RIMBP3CA6NJZ7 1639 aa12.7□□□□□ -0.38
USP54-204ENST00000422491 RIMBP3BA6NNM3 1639 aa12.7□□□□□ -0.38
USP54-204ENST00000422491 RIMBP3Q9UFD9 1639 aa12.7□□□□□ -0.38
USP54-204ENST00000422491 CCDC66A2RUB6 948 aa12.7□□□□□ -0.38
USP54-204ENST00000422491 CDC25BP30305 580 aa12.7□□□□□ -0.38
USP54-204ENST00000422491 ADCK5Q3MIX3 580 aa12.7□□□□□ -0.38
USP54-204ENST00000422491 PDRG1Q9NUG6 133 aa12.7□□□□□ -0.38
USP54-204ENST00000422491 CLIP2Q9UDT6 1046 aa12.7□□□□□ -0.38
USP54-204ENST00000422491 TSPYL4Q9UJ04 414 aa12.7□□□□□ -0.38
USP54-204ENST00000422491 ZNF215Q9UL58 517 aaPredicted RBP12.7□□□□□ -0.38
USP54-204ENST00000422491 SPG7Q9UQ90 795 aa12.7□□□□□ -0.38
USP54-204ENST00000422491 FAM208AQ9UK61 1670 aaKnown RBP12.7□□□□□ -0.38
USP54-204ENST00000422491 IRX5P78411 483 aaPredicted RBP12.69□□□□□ -0.38
USP54-204ENST00000422491 ME3Q16798 604 aa12.69□□□□□ -0.38
USP54-204ENST00000422491 NYAP1Q6ZVC0 841 aa12.69□□□□□ -0.38
USP54-204ENST00000422491 ZSWIM6Q9HCJ5 1215 aa12.69□□□□□ -0.38
USP54-204ENST00000422491 RBM6P78332 1123 aaKnown RBP12.69□□□□□ -0.38
USP54-204ENST00000422491 CWC27Q6UX04 472 aaKnown RBP12.69□□□□□ -0.38
USP54-204ENST00000422491 CDC37L1Q7L3B6 337 aa12.69□□□□□ -0.38
USP54-204ENST00000422491 CNTROBQ8N137 903 aa12.69□□□□□ -0.38
USP54-204ENST00000422491 KCNB2Q92953 911 aa12.69□□□□□ -0.38
USP54-204ENST00000422491 TM6SF1Q9BZW5 370 aa12.69□□□□□ -0.38
USP54-204ENST00000422491 CLSTN2Q9H4D0 955 aa12.69□□□□□ -0.38
USP54-204ENST00000422491 DDX19AQ9NUU7 478 aaKnown RBP12.69□□□□□ -0.38
USP54-204ENST00000422491 USP27XA6NNY8 438 aa12.69□□□□□ -0.38
USP54-204ENST00000422491 WASLO00401 505 aaPredicted RBP12.69□□□□□ -0.38
USP54-204ENST00000422491 RAB11FIP3O75154 756 aa12.69□□□□□ -0.38
USP54-204ENST00000422491 FAM173BQ6P4H8 233 aa12.69□□□□□ -0.38
USP54-204ENST00000422491 STK31Q9BXU1 1019 aa12.69□□□□□ -0.38
USP54-204ENST00000422491 USP44Q9H0E7 712 aa12.69□□□□□ -0.38
USP54-204ENST00000422491 ERBB3P21860 1342 aa12.68□□□□□ -0.38
USP54-204ENST00000422491 DIP2CQ9Y2E4 1556 aa12.68□□□□□ -0.38
USP54-204ENST00000422491 ZNF165P49910 485 aa12.68□□□□□ -0.38
USP54-204ENST00000422491 SLFNL1Q499Z3 407 aa12.68□□□□□ -0.38
USP54-204ENST00000422491 FBXO38Q6PIJ6 1188 aa12.68□□□□□ -0.38
USP54-204ENST00000422491 LRRC8AQ8IWT6 810 aa12.68□□□□□ -0.38
USP54-204ENST00000422491 JAKMIP1Q96N16 626 aaKnown RBP12.68□□□□□ -0.38
USP54-204ENST00000422491 SETD1AO15047 1707 aaKnown RBP12.68□□□□□ -0.38
USP54-204ENST00000422491 ITSN1Q15811 1721 aa12.68□□□□□ -0.38
USP54-204ENST00000422491 AKAP12Q02952 1782 aa12.68□□□□□ -0.38
USP54-204ENST00000422491 KCNJ4P48050 445 aa12.68□□□□□ -0.38
USP54-204ENST00000422491 LARP1BQ659C4 914 aaKnown RBP12.68□□□□□ -0.38
USP54-204ENST00000422491 FERMT3Q86UX7 667 aa12.68□□□□□ -0.38
USP54-204ENST00000422491 RHPN1Q8TCX5 695 aa12.68□□□□□ -0.38
USP54-204ENST00000422491 ZNF592Q92610 1267 aa12.68□□□□□ -0.38
USP54-204ENST00000422491 CHD2O14647 1828 aaKnown RBP12.68□□□□□ -0.38
USP54-204ENST00000422491 NPHP3Q7Z494 1330 aa12.68□□□□□ -0.38
USP54-204ENST00000422491 PXDNLA1KZ92 1463 aa12.67□□□□□ -0.38
USP54-204ENST00000422491 PDIA4P13667 645 aaKnown RBP12.67□□□□□ -0.38
USP54-204ENST00000422491 PTH1RQ03431 593 aa12.67□□□□□ -0.38
USP54-204ENST00000422491 POLA2Q14181 598 aa12.67□□□□□ -0.38
USP54-204ENST00000422491 NECAB1Q8N987 351 aa12.67□□□□□ -0.38
USP54-204ENST00000422491 CYP46A1Q9Y6A2 500 aa12.67□□□□□ -0.38
USP54-204ENST00000422491 ADGRL3Q9HAR2 1447 aa12.67□□□□□ -0.38
USP54-204ENST00000422491 FOXO3O43524 673 aa12.67□□□□□ -0.38
USP54-204ENST00000422491 FAM193AP78312 1265 aa12.67□□□□□ -0.38
USP54-204ENST00000422491 ERO1AQ96HE7 468 aa12.67□□□□□ -0.38
USP54-204ENST00000422491 TIGD1Q96MW7 591 aa12.67□□□□□ -0.38
USP54-204ENST00000422491 SCAND2PQ9GZW5 306 aaPredicted RBP12.67□□□□□ -0.38
USP54-204ENST00000422491 DNAJC25Q9H1X3 360 aa12.67□□□□□ -0.38
USP54-204ENST00000422491 TPCN1Q9ULQ1 816 aa12.67□□□□□ -0.38
USP54-204ENST00000422491 TTC21BQ7Z4L5 1316 aa12.67□□□□□ -0.38
USP54-204ENST00000422491 NCKAP5LQ9HCH0 1330 aa12.67□□□□□ -0.38
USP54-204ENST00000422491 SARM1Q6SZW1 724 aa12.66□□□□□ -0.38
USP54-204ENST00000422491 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.66□□□□□ -0.38
USP54-204ENST00000422491 V9GYY5 206 aaPredicted RBP12.66□□□□□ -0.38
USP54-204ENST00000422491 PEAK1Q9H792 1746 aa12.66□□□□□ -0.38
USP54-204ENST00000422491 NR1I2O75469 434 aa12.66□□□□□ -0.38
USP54-204ENST00000422491 SURF6O75683 361 aaKnown RBP12.66□□□□□ -0.38
USP54-204ENST00000422491 UBTFL1P0CB47 393 aaPredicted RBP12.66□□□□□ -0.38
USP54-204ENST00000422491 ARID5BQ14865 1188 aa12.66□□□□□ -0.38
USP54-204ENST00000422491 PTPN14Q15678 1187 aa12.66□□□□□ -0.38
USP54-204ENST00000422491 ELF2Q15723 593 aa12.66□□□□□ -0.38
USP54-204ENST00000422491 PRPF40BQ6NWY9 871 aaKnown RBP12.66□□□□□ -0.38
USP54-204ENST00000422491 LEO1Q8WVC0 666 aaPredicted RBP12.66□□□□□ -0.38
USP54-204ENST00000422491 KIF1BPQ96EK5 621 aa12.66□□□□□ -0.38
USP54-204ENST00000422491 USP42Q9H9J4 1324 aaKnown RBP12.66□□□□□ -0.38
USP54-204ENST00000422491 MAP3K5Q99683 1374 aa12.66□□□□□ -0.38
USP54-204ENST00000422491 NEMFO60524 1076 aa12.65□□□□□ -0.38
USP54-204ENST00000422491 PDE4CQ08493 712 aa12.65□□□□□ -0.38
USP54-204ENST00000422491 SPATA31D1Q6ZQQ2 1576 aa12.65□□□□□ -0.38
USP54-204ENST00000422491 PPP1R42Q7Z4L9 355 aa12.65□□□□□ -0.38
USP54-204ENST00000422491 CREBRFQ8IUR6 639 aa12.65□□□□□ -0.38
USP54-204ENST00000422491 NUDT16Q96DE0 195 aaKnown RBP12.65□□□□□ -0.38
USP54-204ENST00000422491 BCL11BQ9C0K0 894 aaPredicted RBP12.65□□□□□ -0.38
USP54-204ENST00000422491 ST7Q9NRC1 585 aa12.65□□□□□ -0.38
USP54-204ENST00000422491 ZNF446Q9NWS9 450 aa12.65□□□□□ -0.38
USP54-204ENST00000422491 CAVIN2O95810 425 aa12.65□□□□□ -0.38
USP54-204ENST00000422491 SLC20A2Q08357 652 aa12.65□□□□□ -0.38
USP54-204ENST00000422491 IQCB1Q15051 598 aa12.65□□□□□ -0.38
USP54-204ENST00000422491 NECTIN1Q15223 517 aa12.65□□□□□ -0.38
USP54-204ENST00000422491 MTHFSDQ2M296 383 aaKnown RBP12.65□□□□□ -0.38
USP54-204ENST00000422491 CCDC30Q5VVM6 783 aa12.65□□□□□ -0.38
USP54-204ENST00000422491 MRFAP1L1Q96HT8 127 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms