RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 CRKLP46109 303 aaKnown RBP21.55■■□□□ 1.04
CCDC28B-202ENST00000421922 ITPK1Q13572 414 aa21.55■■□□□ 1.04
CCDC28B-202ENST00000421922 LRP10Q7Z4F1 713 aa21.55■■□□□ 1.04
CCDC28B-202ENST00000421922 ZBTB40Q9NUA8 1239 aa21.55■■□□□ 1.04
CCDC28B-202ENST00000421922 GNAI3P08754 354 aa21.54■■□□□ 1.04
CCDC28B-202ENST00000421922 IL6STP40189 918 aaPredicted RBP21.54■■□□□ 1.04
CCDC28B-202ENST00000421922 DEFB132Q7Z7B7 95 aa21.54■■□□□ 1.04
CCDC28B-202ENST00000421922 ALDH1L1O75891 902 aa21.53■■□□□ 1.04
CCDC28B-202ENST00000421922 HMGB2P26583 209 aaKnown RBP21.53■■□□□ 1.04
CCDC28B-202ENST00000421922 TAF1LQ8IZX4 1826 aa21.52■■□□□ 1.04
CCDC28B-202ENST00000421922 BEND3Q5T5X7 828 aa21.52■■□□□ 1.04
CCDC28B-202ENST00000421922 TTLL7Q6ZT98 887 aa21.52■■□□□ 1.04
CCDC28B-202ENST00000421922 LINS1Q8NG48 757 aa21.52■■□□□ 1.04
CCDC28B-202ENST00000421922 MYD88Q99836 296 aa21.52■■□□□ 1.04
CCDC28B-202ENST00000421922 METTL22Q9BUU2 404 aaPredicted RBP21.52■■□□□ 1.04
CCDC28B-202ENST00000421922 ZBTB3Q9H5J0 574 aa21.51■■□□□ 1.03
CCDC28B-202ENST00000421922 CNTNAP4Q9C0A0 1308 aa21.51■■□□□ 1.03
CCDC28B-202ENST00000421922 UBTFL1P0CB47 393 aaPredicted RBP21.5■■□□□ 1.03
CCDC28B-202ENST00000421922 LINC00116Q8NCU8 138 aa21.5■■□□□ 1.03
CCDC28B-202ENST00000421922 MEIS3Q99687 375 aa21.5■■□□□ 1.03
CCDC28B-202ENST00000421922 RWDD1Q9H446 243 aaPredicted RBP21.5■■□□□ 1.03
CCDC28B-202ENST00000421922 MYH14Q7Z406 1995 aaKnown RBP21.5■■□□□ 1.03
CCDC28B-202ENST00000421922 INTS5Q6P9B9 1019 aaKnown RBP21.49■■□□□ 1.03
CCDC28B-202ENST00000421922 C1orf115Q9H7X2 142 aa21.49■■□□□ 1.03
CCDC28B-202ENST00000421922 C9orf78Q9NZ63 289 aaPredicted RBP21.49■■□□□ 1.03
CCDC28B-202ENST00000421922 HDAC5Q9UQL6 1122 aa21.49■■□□□ 1.03
CCDC28B-202ENST00000421922 LRP5O75197 1615 aa21.49■■□□□ 1.03
CCDC28B-202ENST00000421922 GNAI2P04899 355 aa21.48■■□□□ 1.03
CCDC28B-202ENST00000421922 SLC27A3Q5K4L6 730 aa21.48■■□□□ 1.03
CCDC28B-202ENST00000421922 CENPQQ7L2Z9 268 aaPredicted RBP21.48■■□□□ 1.03
CCDC28B-202ENST00000421922 A0A087WZG4 1122 aa21.47■■□□□ 1.03
CCDC28B-202ENST00000421922 KCNQ4P56696 695 aa21.47■■□□□ 1.03
CCDC28B-202ENST00000421922 DZIP3Q86Y13 1208 aaKnown RBP21.47■■□□□ 1.03
CCDC28B-202ENST00000421922 PELP1Q8IZL8 1130 aaKnown RBP21.47■■□□□ 1.03
CCDC28B-202ENST00000421922 PCDHB15Q9Y5E8 787 aa21.47■■□□□ 1.03
CCDC28B-202ENST00000421922 MAP3K15Q6ZN16 1313 aa21.47■■□□□ 1.03
CCDC28B-202ENST00000421922 C4BP0C0L5 1744 aa21.47■■□□□ 1.03
CCDC28B-202ENST00000421922 TNS1Q9HBL0 1735 aaKnown RBP21.47■■□□□ 1.03
CCDC28B-202ENST00000421922 APBA3O96018 575 aa21.46■■□□□ 1.03
CCDC28B-202ENST00000421922 EIF5P55010 431 aaKnown RBP21.46■■□□□ 1.03
CCDC28B-202ENST00000421922 CWF19L2Q2TBE0 894 aaKnown RBP21.46■■□□□ 1.03
CCDC28B-202ENST00000421922 HSP90AB3PQ58FF7 597 aa21.46■■□□□ 1.03
CCDC28B-202ENST00000421922 RC3H1Q5TC82 1133 aaKnown RBP21.46■■□□□ 1.03
CCDC28B-202ENST00000421922 COL15A1P39059 1388 aa21.46■■□□□ 1.03
CCDC28B-202ENST00000421922 ANKRD36CQ5JPF3 1778 aa21.46■■□□□ 1.03
CCDC28B-202ENST00000421922 AK7Q96M32 723 aa21.46■■□□□ 1.03
CCDC28B-202ENST00000421922 NEURL1BA8MQ27 555 aa21.45■■□□□ 1.02
CCDC28B-202ENST00000421922 NUP98P52948 1817 aa21.44■■□□□ 1.02
CCDC28B-202ENST00000421922 ATP5J2-PTCD1G3V325 749 aa21.44■■□□□ 1.02
CCDC28B-202ENST00000421922 GNPATO15228 680 aa21.44■■□□□ 1.02
CCDC28B-202ENST00000421922 USP44Q9H0E7 712 aa21.44■■□□□ 1.02
CCDC28B-202ENST00000421922 IBTKQ9P2D0 1353 aaPredicted RBP21.43■■□□□ 1.02
CCDC28B-202ENST00000421922 ERVV-1B6SEH8 477 aa21.43■■□□□ 1.02
CCDC28B-202ENST00000421922 GRM8O00222 908 aa21.43■■□□□ 1.02
CCDC28B-202ENST00000421922 HMMRO75330 724 aa21.43■■□□□ 1.02
CCDC28B-202ENST00000421922 IGKV5-2P06315 115 aa21.43■■□□□ 1.02
CCDC28B-202ENST00000421922 RPAP2Q8IXW5 612 aaPredicted RBP21.43■■□□□ 1.02
CCDC28B-202ENST00000421922 CWC25Q9NXE8 425 aaPredicted RBP21.43■■□□□ 1.02
CCDC28B-202ENST00000421922 TBC1D2BQ9UPU7 963 aa21.43■■□□□ 1.02
CCDC28B-202ENST00000421922 RTCBQ9Y3I0 505 aaKnown RBP21.43■■□□□ 1.02
CCDC28B-202ENST00000421922 RGPD3A6NKT7 1758 aaPredicted RBP21.43■■□□□ 1.02
CCDC28B-202ENST00000421922 RGPD4Q7Z3J3 1758 aa21.43■■□□□ 1.02
CCDC28B-202ENST00000421922 SF3B2Q13435 895 aaKnown RBP21.42■■□□□ 1.02
CCDC28B-202ENST00000421922 HDAC1Q13547 482 aaPredicted RBP21.42■■□□□ 1.02
CCDC28B-202ENST00000421922 GCKRQ14397 625 aa21.42■■□□□ 1.02
CCDC28B-202ENST00000421922 GIGYF2Q6Y7W6 1299 aaKnown RBP21.42■■□□□ 1.02
CCDC28B-202ENST00000421922 ZNF652Q9Y2D9 606 aa21.42■■□□□ 1.02
CCDC28B-202ENST00000421922 LRRFIP2Q9Y608 721 aaKnown RBP21.42■■□□□ 1.02
CCDC28B-202ENST00000421922 BCORQ6W2J9 1755 aa21.41■■□□□ 1.02
CCDC28B-202ENST00000421922 PLSCR1O15162 318 aa21.41■■□□□ 1.02
CCDC28B-202ENST00000421922 RPS6KA4O75676 772 aa21.41■■□□□ 1.02
CCDC28B-202ENST00000421922 TCIRG1Q13488 830 aa21.41■■□□□ 1.02
CCDC28B-202ENST00000421922 TXNRD1Q16881 649 aa21.41■■□□□ 1.02
CCDC28B-202ENST00000421922 KDM2BQ8NHM5 1336 aa21.4■■□□□ 1.02
CCDC28B-202ENST00000421922 ANKRD44Q8N8A2 993 aa21.4■■□□□ 1.02
CCDC28B-202ENST00000421922 CCDC191Q8NCU4 936 aa21.4■■□□□ 1.02
CCDC28B-202ENST00000421922 IGHDP01880 384 aa21.39■■□□□ 1.02
CCDC28B-202ENST00000421922 CEP85Q6P2H3 762 aa21.39■■□□□ 1.02
CCDC28B-202ENST00000421922 SCN7AQ01118 1682 aa21.39■■□□□ 1.01
CCDC28B-202ENST00000421922 NBPF7P0C2Y1 421 aaPredicted RBP21.38■■□□□ 1.01
CCDC28B-202ENST00000421922 LRRC4BQ9NT99 713 aa21.38■■□□□ 1.01
CCDC28B-202ENST00000421922 PSDA5PKW4 1024 aaPredicted RBP21.38■■□□□ 1.01
CCDC28B-202ENST00000421922 ISCA1Q9BUE6 129 aa21.38■■□□□ 1.01
CCDC28B-202ENST00000421922 UTYO14607 1347 aa21.37■■□□□ 1.01
CCDC28B-202ENST00000421922 ZPR1O75312 459 aa21.37■■□□□ 1.01
CCDC28B-202ENST00000421922 HLFQ16534 295 aa21.37■■□□□ 1.01
CCDC28B-202ENST00000421922 PHF14O94880 888 aa21.36■■□□□ 1.01
CCDC28B-202ENST00000421922 CAMTA2O94983 1202 aa21.36■■□□□ 1.01
CCDC28B-202ENST00000421922 GPTP24298 496 aa21.36■■□□□ 1.01
CCDC28B-202ENST00000421922 TRIM28Q13263 835 aaKnown RBP21.36■■□□□ 1.01
CCDC28B-202ENST00000421922 UBE3BQ7Z3V4 1068 aa21.36■■□□□ 1.01
CCDC28B-202ENST00000421922 UBR3Q6ZT12 1888 aa21.36■■□□□ 1.01
CCDC28B-202ENST00000421922 ADRA2BP18089 450 aa21.35■■□□□ 1.01
CCDC28B-202ENST00000421922 TRAPPC3LQ5T215 181 aa21.35■■□□□ 1.01
CCDC28B-202ENST00000421922 GCC1Q96CN9 775 aa21.35■■□□□ 1.01
CCDC28B-202ENST00000421922 ZBTB47Q9UFB7 747 aaPredicted RBP21.35■■□□□ 1.01
CCDC28B-202ENST00000421922 C4AP0C0L4 1744 aa21.35■■□□□ 1.01
CCDC28B-202ENST00000421922 RFC4P35249 363 aa21.34■■□□□ 1.01
CCDC28B-202ENST00000421922 RGL2O15211 777 aa21.33■■□□□ 1.01
CCDC28B-202ENST00000421922 BAG6P46379 1132 aa21.33■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms