RNA–Protein interactions for RNA: ENST00000418628.5

PTCD3-204, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 532 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-204ENST00000418628 NFIXQ14938 502 aa24.16■■□□□ 1.46
PTCD3-204ENST00000418628 CHPF2Q9P2E5 772 aa24.16■■□□□ 1.46
PTCD3-204ENST00000418628 ANXA1P04083 346 aa24.15■■□□□ 1.46
PTCD3-204ENST00000418628 MYL6BP14649 208 aa24.15■■□□□ 1.46
PTCD3-204ENST00000418628 CLEC4GQ6UXB4 293 aa24.15■■□□□ 1.46
PTCD3-204ENST00000418628 TTLL7Q6ZT98 887 aa24.15■■□□□ 1.46
PTCD3-204ENST00000418628 MAP3K15Q6ZN16 1313 aa24.14■■□□□ 1.46
PTCD3-204ENST00000418628 LAMB2P55268 1798 aa24.14■■□□□ 1.46
PTCD3-204ENST00000418628 CACNA1SQ13698 1873 aa24.14■■□□□ 1.45
PTCD3-204ENST00000418628 SYT17Q9BSW7 474 aa24.14■■□□□ 1.45
PTCD3-204ENST00000418628 MYH16Q9H6N6 1097 aa24.14■■□□□ 1.45
PTCD3-204ENST00000418628 ERVV-1B6SEH8 477 aa24.13■■□□□ 1.45
PTCD3-204ENST00000418628 TBC1D9BQ66K14 1250 aa24.13■■□□□ 1.45
PTCD3-204ENST00000418628 NPM2Q86SE8 214 aaKnown RBP24.13■■□□□ 1.45
PTCD3-204ENST00000418628 NECTIN2Q92692 538 aa24.13■■□□□ 1.45
PTCD3-204ENST00000418628 DBF4Q9UBU7 674 aaPredicted RBP24.13■■□□□ 1.45
PTCD3-204ENST00000418628 CARMIL3Q8ND23 1372 aa24.13■■□□□ 1.45
PTCD3-204ENST00000418628 TNRC6CQ9HCJ0 1690 aaKnown RBP24.12■■□□□ 1.45
PTCD3-204ENST00000418628 ELL2O00472 640 aaPredicted RBP24.12■■□□□ 1.45
PTCD3-204ENST00000418628 GOLGA2Q08379 1002 aa24.12■■□□□ 1.45
PTCD3-204ENST00000418628 TWISTNBQ3B726 338 aaPredicted RBP24.12■■□□□ 1.45
PTCD3-204ENST00000418628 CD2APQ9Y5K6 639 aa24.12■■□□□ 1.45
PTCD3-204ENST00000418628 PXDNLA1KZ92 1463 aa24.12■■□□□ 1.45
PTCD3-204ENST00000418628 CHD4Q14839 1912 aa24.12■■□□□ 1.45
PTCD3-204ENST00000418628 SLFN5Q08AF3 891 aa24.11■■□□□ 1.45
PTCD3-204ENST00000418628 TRMT2AQ8IZ69 625 aaKnown RBP24.11■■□□□ 1.45
PTCD3-204ENST00000418628 PARP3Q9Y6F1 533 aa24.11■■□□□ 1.45
PTCD3-204ENST00000418628 DDX60Q8IY21 1712 aaKnown RBP24.1■■□□□ 1.45
PTCD3-204ENST00000418628 E9PSI1 815 aa24.1■■□□□ 1.45
PTCD3-204ENST00000418628 EXOSC9Q06265 439 aaKnown RBP24.1■■□□□ 1.45
PTCD3-204ENST00000418628 HLFQ16534 295 aa24.1■■□□□ 1.45
PTCD3-204ENST00000418628 ZNF652Q9Y2D9 606 aa24.1■■□□□ 1.45
PTCD3-204ENST00000418628 HYPKQ9NX55 129 aa24.09■■□□□ 1.45
PTCD3-204ENST00000418628 IBTKQ9P2D0 1353 aaPredicted RBP24.08■■□□□ 1.45
PTCD3-204ENST00000418628 VAMP4O75379 141 aa24.08■■□□□ 1.45
PTCD3-204ENST00000418628 CCDC30Q5VVM6 783 aa24.08■■□□□ 1.45
PTCD3-204ENST00000418628 KIF6Q6ZMV9 814 aa24.08■■□□□ 1.45
PTCD3-204ENST00000418628 XAGE3Q8WTP9 111 aa24.08■■□□□ 1.45
PTCD3-204ENST00000418628 CHMP4AQ9BY43 222 aa24.08■■□□□ 1.45
PTCD3-204ENST00000418628 GIGYF2Q6Y7W6 1299 aaKnown RBP24.07■■□□□ 1.44
PTCD3-204ENST00000418628 COPS6Q7L5N1 327 aa24.07■■□□□ 1.44
PTCD3-204ENST00000418628 NLGN2Q8NFZ4 835 aa24.07■■□□□ 1.44
PTCD3-204ENST00000418628 MYH3P11055 1940 aa24.06■■□□□ 1.44
PTCD3-204ENST00000418628 CDCA7LQ96GN5 454 aa24.06■■□□□ 1.44
PTCD3-204ENST00000418628 ZBTB3Q9H5J0 574 aa24.06■■□□□ 1.44
PTCD3-204ENST00000418628 SERPINB2P05120 415 aa24.05■■□□□ 1.44
PTCD3-204ENST00000418628 UBN2Q6ZU65 1347 aa24.05■■□□□ 1.44
PTCD3-204ENST00000418628 GOLGB1Q14789 3259 aaKnown RBP24.04■■□□□ 1.44
PTCD3-204ENST00000418628 RIC1Q4ADV7 1423 aa24.04■■□□□ 1.44
PTCD3-204ENST00000418628 BICDL1Q6ZP65 573 aa24.04■■□□□ 1.44
PTCD3-204ENST00000418628 ZNF34Q8IZ26 560 aa24.04■■□□□ 1.44
PTCD3-204ENST00000418628 SETDB2Q96T68 719 aa24.03■■□□□ 1.44
PTCD3-204ENST00000418628 PHAXQ9H814 394 aaKnown RBP24.03■■□□□ 1.44
PTCD3-204ENST00000418628 PRR5LQ6MZQ0 368 aa24.02■■□□□ 1.44
PTCD3-204ENST00000418628 PLBD2Q8NHP8 589 aa24.02■■□□□ 1.44
PTCD3-204ENST00000418628 NIP7Q9Y221 180 aaKnown RBP eCLIP24.02■■□□□ 1.44
PTCD3-204ENST00000418628 ZBED9Q6R2W3 1325 aa24.02■■□□□ 1.44
PTCD3-204ENST00000418628 HNRNPUQ00839 825 aaKnown RBP eCLIP24.01■■□□□ 1.43
PTCD3-204ENST00000418628 KLHL34Q8N239 644 aa24.01■■□□□ 1.43
PTCD3-204ENST00000418628 TGFB2P61812 414 aa24■■□□□ 1.43
PTCD3-204ENST00000418628 AIMP1Q12904 312 aaKnown RBP24■■□□□ 1.43
PTCD3-204ENST00000418628 ANKRD13DQ6ZTN6 518 aa23.99■■□□□ 1.43
PTCD3-204ENST00000418628 STK31Q9BXU1 1019 aa23.99■■□□□ 1.43
PTCD3-204ENST00000418628 ADCY9O60503 1353 aa23.99■■□□□ 1.43
PTCD3-204ENST00000418628 CNBD1Q8NA66 436 aa23.98■■□□□ 1.43
PTCD3-204ENST00000418628 UTRNP46939 3433 aa23.98■■□□□ 1.43
PTCD3-204ENST00000418628 SLX4Q8IY92 1834 aa23.98■■□□□ 1.43
PTCD3-204ENST00000418628 SBF1O95248 1867 aa23.97■■□□□ 1.43
PTCD3-204ENST00000418628 HSP90AB3PQ58FF7 597 aa23.97■■□□□ 1.43
PTCD3-204ENST00000418628 G2E3Q7L622 706 aa23.97■■□□□ 1.43
PTCD3-204ENST00000418628 ABCC12Q96J65 1359 aa23.97■■□□□ 1.43
PTCD3-204ENST00000418628 FER1L6Q2WGJ9 1857 aa23.96■■□□□ 1.43
PTCD3-204ENST00000418628 TCERG1O14776 1098 aaKnown RBP23.96■■□□□ 1.43
PTCD3-204ENST00000418628 NTSR2O95665 410 aa23.96■■□□□ 1.43
PTCD3-204ENST00000418628 TCIRG1Q13488 830 aa23.96■■□□□ 1.43
PTCD3-204ENST00000418628 PARP10Q53GL7 1025 aa23.96■■□□□ 1.43
PTCD3-204ENST00000418628 ISCA1Q9BUE6 129 aa23.96■■□□□ 1.43
PTCD3-204ENST00000418628 TAF1P21675 1872 aa23.96■■□□□ 1.43
PTCD3-204ENST00000418628 SLC4A2P04920 1241 aa23.95■■□□□ 1.42
PTCD3-204ENST00000418628 KCNA3P22001 575 aa23.95■■□□□ 1.42
PTCD3-204ENST00000418628 GPTP24298 496 aa23.95■■□□□ 1.42
PTCD3-204ENST00000418628 NBPF5PQ86XG9 351 aaPredicted RBP23.95■■□□□ 1.42
PTCD3-204ENST00000418628 CCDC88AQ3V6T2 1871 aa23.95■■□□□ 1.42
PTCD3-204ENST00000418628 RNF123Q5XPI4 1314 aa23.94■■□□□ 1.42
PTCD3-204ENST00000418628 ZNF428Q96B54 188 aa23.94■■□□□ 1.42
PTCD3-204ENST00000418628 BRIP1Q9BX63 1249 aa23.94■■□□□ 1.42
PTCD3-204ENST00000418628 CT47B1P0C2W7 299 aaPredicted RBP23.93■■□□□ 1.42
PTCD3-204ENST00000418628 DPEP1P16444 411 aa23.93■■□□□ 1.42
PTCD3-204ENST00000418628 FLIIQ13045 1269 aa23.93■■□□□ 1.42
PTCD3-204ENST00000418628 TRIM28Q13263 835 aaKnown RBP23.93■■□□□ 1.42
PTCD3-204ENST00000418628 SUSD4Q5VX71 490 aa23.93■■□□□ 1.42
PTCD3-204ENST00000418628 NLRP10Q86W26 655 aa23.93■■□□□ 1.42
PTCD3-204ENST00000418628 KLRG2A4D1S0 409 aaPredicted RBP23.92■■□□□ 1.42
PTCD3-204ENST00000418628 TPTE2Q6XPS3 522 aa23.92■■□□□ 1.42
PTCD3-204ENST00000418628 NYXQ9GZU5 481 aa23.92■■□□□ 1.42
PTCD3-204ENST00000418628 DDX58O95786 925 aaKnown RBP23.91■■□□□ 1.42
PTCD3-204ENST00000418628 ST5P78524 1137 aa23.91■■□□□ 1.42
PTCD3-204ENST00000418628 KSR2Q6VAB6 950 aa23.91■■□□□ 1.42
PTCD3-204ENST00000418628 DICER1Q9UPY3 1922 aaKnown RBP23.9■■□□□ 1.42
PTCD3-204ENST00000418628 A0A0G2JLW4 131 aa23.9■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms