RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 ATP4AP20648 1035 aa8.03□□□□□ -1.12
VPS54-204ENST00000416400 C16orf46Q6P387 395 aa8.03□□□□□ -1.12
VPS54-204ENST00000416400 NLRP8Q86W28 1048 aa8.03□□□□□ -1.12
VPS54-204ENST00000416400 TRERF1Q96PN7 1200 aa8.03□□□□□ -1.12
VPS54-204ENST00000416400 ZIC5Q96T25 663 aa8.03□□□□□ -1.12
VPS54-204ENST00000416400 CRISPLD1Q9H336 500 aa8.03□□□□□ -1.12
VPS54-204ENST00000416400 TERTO14746 1132 aaKnown RBP8.02□□□□□ -1.13
VPS54-204ENST00000416400 VEGFBP49765 207 aa8.02□□□□□ -1.13
VPS54-204ENST00000416400 PHLDB3Q6NSJ2 640 aa8.02□□□□□ -1.13
VPS54-204ENST00000416400 LRRC69Q6ZNQ3 347 aa8.02□□□□□ -1.13
VPS54-204ENST00000416400 VWA5B2Q8N398 1253 aa8.02□□□□□ -1.13
VPS54-204ENST00000416400 ABL1P00519 1130 aa8.01□□□□□ -1.13
VPS54-204ENST00000416400 C11orf91Q3C1V1 193 aa8.01□□□□□ -1.13
VPS54-204ENST00000416400 SND1Q7KZF4 910 aaKnown RBP eCLIP8.01□□□□□ -1.13
VPS54-204ENST00000416400 TXNDC2Q86VQ3 553 aa8.01□□□□□ -1.13
VPS54-204ENST00000416400 PHF24Q9UPV7 400 aa8.01□□□□□ -1.13
VPS54-204ENST00000416400 BRD2P25440 801 aaKnown RBP8□□□□□ -1.13
VPS54-204ENST00000416400 DGKZQ13574 1117 aa8□□□□□ -1.13
VPS54-204ENST00000416400 DBN1Q16643 649 aa8□□□□□ -1.13
VPS54-204ENST00000416400 CCDC27Q2M243 656 aa8□□□□□ -1.13
VPS54-204ENST00000416400 RGS22Q8NE09 1264 aa8□□□□□ -1.13
VPS54-204ENST00000416400 GTPBP3Q969Y2 492 aaKnown RBP8□□□□□ -1.13
VPS54-204ENST00000416400 MYO19Q96H55 970 aa8□□□□□ -1.13
VPS54-204ENST00000416400 QTRT2Q9H974 415 aaKnown RBP8□□□□□ -1.13
VPS54-204ENST00000416400 SEPT3Q9UH03 358 aa8□□□□□ -1.13
VPS54-204ENST00000416400 H3BM21 787 aa7.99□□□□□ -1.13
VPS54-204ENST00000416400 COX20Q5RI15 118 aa7.99□□□□□ -1.13
VPS54-204ENST00000416400 GTF3C2Q8WUA4 911 aaPredicted RBP7.99□□□□□ -1.13
VPS54-204ENST00000416400 NANOS1Q8WY41 292 aaKnown RBP7.99□□□□□ -1.13
VPS54-204ENST00000416400 IRF7Q92985 503 aa7.99□□□□□ -1.13
VPS54-204ENST00000416400 ZNF837Q96EG3 531 aaPredicted RBP7.99□□□□□ -1.13
VPS54-204ENST00000416400 SUSD3Q96L08 255 aa7.99□□□□□ -1.13
VPS54-204ENST00000416400 KLK14Q9P0G3 267 aa7.99□□□□□ -1.13
VPS54-204ENST00000416400 PCDHGC4Q9Y5F7 938 aa7.99□□□□□ -1.13
VPS54-204ENST00000416400 ATXN7O15265 892 aaPredicted RBP7.98□□□□□ -1.13
VPS54-204ENST00000416400 CAPN12Q6ZSI9 719 aa7.98□□□□□ -1.13
VPS54-204ENST00000416400 IFT43Q96FT9 208 aa7.98□□□□□ -1.13
VPS54-204ENST00000416400 HSH2DQ96JZ2 352 aa7.98□□□□□ -1.13
VPS54-204ENST00000416400 CEP63Q96MT8 703 aa7.98□□□□□ -1.13
VPS54-204ENST00000416400 ZCCHC2Q9C0B9 1178 aaKnown RBP7.98□□□□□ -1.13
VPS54-204ENST00000416400 CUEDC1Q9NWM3 386 aaPredicted RBP7.98□□□□□ -1.13
VPS54-204ENST00000416400 KHNYNO15037 678 aaKnown RBP7.97□□□□□ -1.13
VPS54-204ENST00000416400 SCNN1AP37088 669 aa7.97□□□□□ -1.13
VPS54-204ENST00000416400 ABTB2Q8N961 1025 aa7.97□□□□□ -1.13
VPS54-204ENST00000416400 HELQQ8TDG4 1101 aa7.97□□□□□ -1.13
VPS54-204ENST00000416400 SAP130Q9H0E3 1048 aa7.97□□□□□ -1.13
VPS54-204ENST00000416400 STIM2Q9P246 746 aa7.97□□□□□ -1.13
VPS54-204ENST00000416400 TGFBR3LH3BV60 316 aa7.96□□□□□ -1.14
VPS54-204ENST00000416400 SF3B2Q13435 895 aaKnown RBP7.96□□□□□ -1.14
VPS54-204ENST00000416400 SAMD5Q5TGI4 173 aa7.96□□□□□ -1.14
VPS54-204ENST00000416400 FAM13BQ9NYF5 915 aa7.96□□□□□ -1.14
VPS54-204ENST00000416400 EPB42P16452 691 aa7.95□□□□□ -1.14
VPS54-204ENST00000416400 AAMPQ13685 434 aa7.95□□□□□ -1.14
VPS54-204ENST00000416400 IER5Q5VY09 327 aa7.95□□□□□ -1.14
VPS54-204ENST00000416400 BTLAQ7Z6A9 289 aa7.95□□□□□ -1.14
VPS54-204ENST00000416400 ZNF280CQ8ND82 737 aa7.95□□□□□ -1.14
VPS54-204ENST00000416400 C7orf43Q8WVR3 580 aa7.95□□□□□ -1.14
VPS54-204ENST00000416400 CFHR5Q9BXR6 569 aa7.95□□□□□ -1.14
VPS54-204ENST00000416400 LRFN2Q9ULH4 789 aa7.95□□□□□ -1.14
VPS54-204ENST00000416400 ATXN7L1Q9ULK2 861 aaPredicted RBP7.95□□□□□ -1.14
VPS54-204ENST00000416400 NSFL1CQ9UNZ2 370 aaKnown RBP7.95□□□□□ -1.14
VPS54-204ENST00000416400 DCDC2BA2VCK2 349 aa7.94□□□□□ -1.14
VPS54-204ENST00000416400 GPR25O00155 361 aa7.94□□□□□ -1.14
VPS54-204ENST00000416400 WFS1O76024 890 aa7.94□□□□□ -1.14
VPS54-204ENST00000416400 MICAL2O94851 1124 aa7.94□□□□□ -1.14
VPS54-204ENST00000416400 FAM13AO94988 1023 aa7.94□□□□□ -1.14
VPS54-204ENST00000416400 SERPINB4P48594 390 aa7.94□□□□□ -1.14
VPS54-204ENST00000416400 FKBP4Q02790 459 aaKnown RBP eCLIP7.94□□□□□ -1.14
VPS54-204ENST00000416400 GLYCTKQ8IVS8 523 aa7.94□□□□□ -1.14
VPS54-204ENST00000416400 ZNF775Q96BV0 537 aaPredicted RBP7.94□□□□□ -1.14
VPS54-204ENST00000416400 ABHD17AQ96GS6 310 aa7.94□□□□□ -1.14
VPS54-204ENST00000416400 ANO2Q9NQ90 1003 aa7.94□□□□□ -1.14
VPS54-204ENST00000416400 EGFL7Q9UHF1 273 aa7.94□□□□□ -1.14
VPS54-204ENST00000416400 DNMT3AQ9Y6K1 912 aaPredicted RBP7.94□□□□□ -1.14
VPS54-204ENST00000416400 FAM157BP0CG42 384 aa7.93□□□□□ -1.14
VPS54-204ENST00000416400 ZNF211Q13398 564 aaPredicted RBP7.93□□□□□ -1.14
VPS54-204ENST00000416400 ALKBH2Q6NS38 261 aa7.93□□□□□ -1.14
VPS54-204ENST00000416400 TREML1Q86YW5 311 aa7.93□□□□□ -1.14
VPS54-204ENST00000416400 TTC16Q8NEE8 873 aa7.93□□□□□ -1.14
VPS54-204ENST00000416400 FOXD4L4Q8WXT5 416 aaPredicted RBP7.93□□□□□ -1.14
VPS54-204ENST00000416400 BRD7Q9NPI1 651 aa7.93□□□□□ -1.14
VPS54-204ENST00000416400 H3BRB1 525 aa7.92□□□□□ -1.14
VPS54-204ENST00000416400 BNIP3LO60238 219 aa7.92□□□□□ -1.14
VPS54-204ENST00000416400 VSIG8P0DPA2 414 aa7.92□□□□□ -1.14
VPS54-204ENST00000416400 MAPTP10636 758 aaKnown RBP7.92□□□□□ -1.14
VPS54-204ENST00000416400 IDH3AP50213 366 aa7.92□□□□□ -1.14
VPS54-204ENST00000416400 ARSDP51689 593 aa7.92□□□□□ -1.14
VPS54-204ENST00000416400 NFX1Q12986 1120 aaKnown RBP7.92□□□□□ -1.14
VPS54-204ENST00000416400 LAMC2Q13753 1193 aa7.92□□□□□ -1.14
VPS54-204ENST00000416400 NOM1Q5C9Z4 860 aaKnown RBP7.92□□□□□ -1.14
VPS54-204ENST00000416400 TUT1Q9H6E5 874 aaKnown RBP7.92□□□□□ -1.14
VPS54-204ENST00000416400 MARK1Q9P0L2 795 aa7.92□□□□□ -1.14
VPS54-204ENST00000416400 SOWAHDA6NJG2 315 aa7.91□□□□□ -1.14
VPS54-204ENST00000416400 PCSK2P16519 638 aa7.91□□□□□ -1.14
VPS54-204ENST00000416400 MX2P20592 715 aa7.91□□□□□ -1.14
VPS54-204ENST00000416400 FGFR3P22607 806 aa7.91□□□□□ -1.14
VPS54-204ENST00000416400 TNP2Q05952 138 aa7.91□□□□□ -1.14
VPS54-204ENST00000416400 TYRO3Q06418 890 aa7.91□□□□□ -1.14
VPS54-204ENST00000416400 NEUROD1Q13562 356 aa7.91□□□□□ -1.14
VPS54-204ENST00000416400 MTMR3Q13615 1198 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 181.4 ms