RNA–Protein interactions for RNA: ENST00000413987.1

SNHG3-201, Transcript of small nucleolar RNA host gene 3, humanhuman

TSL 1 (best)

Gene SNHG3, Length 2,201 nt, Biotype retained intron, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG3-201ENST00000413987 ALS2Q96Q42 1657 aa11.54□□□□□ -0.56
SNHG3-201ENST00000413987 MED1Q15648 1581 aaPredicted RBP11.54□□□□□ -0.56
SNHG3-201ENST00000413987 GCP02774 474 aa11.54□□□□□ -0.56
SNHG3-201ENST00000413987 BDNFP23560 247 aa11.54□□□□□ -0.56
SNHG3-201ENST00000413987 ERCC5P28715 1186 aaPredicted RBP11.54□□□□□ -0.56
SNHG3-201ENST00000413987 IL13P35225 146 aa11.54□□□□□ -0.56
SNHG3-201ENST00000413987 CLCN1P35523 988 aa11.54□□□□□ -0.56
SNHG3-201ENST00000413987 CDCA7LQ96GN5 454 aa11.54□□□□□ -0.56
SNHG3-201ENST00000413987 NFAT5O94916 1531 aa11.54□□□□□ -0.56
SNHG3-201ENST00000413987 EPB41L2O43491 1005 aaKnown RBP11.54□□□□□ -0.56
SNHG3-201ENST00000413987 PLIN1O60240 522 aa11.54□□□□□ -0.56
SNHG3-201ENST00000413987 GYS2P54840 703 aa11.54□□□□□ -0.56
SNHG3-201ENST00000413987 AMOTL1Q8IY63 956 aa11.54□□□□□ -0.56
SNHG3-201ENST00000413987 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.54□□□□□ -0.56
SNHG3-201ENST00000413987 LTN1O94822 1766 aa11.53□□□□□ -0.56
SNHG3-201ENST00000413987 SSFA2P28290 1259 aa11.53□□□□□ -0.56
SNHG3-201ENST00000413987 CCDC144BQ3MJ40 725 aa11.53□□□□□ -0.56
SNHG3-201ENST00000413987 DCAF8Q5TAQ9 597 aa11.53□□□□□ -0.56
SNHG3-201ENST00000413987 CCAR1Q8IX12 1150 aaKnown RBP11.53□□□□□ -0.56
SNHG3-201ENST00000413987 TANGO6Q9C0B7 1094 aa11.53□□□□□ -0.56
SNHG3-201ENST00000413987 ROBO1Q9Y6N7 1651 aa11.53□□□□□ -0.56
SNHG3-201ENST00000413987 TNS3Q68CZ2 1445 aa11.53□□□□□ -0.56
SNHG3-201ENST00000413987 HOXC9P31274 260 aa11.52□□□□□ -0.56
SNHG3-201ENST00000413987 CASC1Q6TDU7 716 aa11.52□□□□□ -0.56
SNHG3-201ENST00000413987 NLGN1Q8N2Q7 840 aa11.52□□□□□ -0.56
SNHG3-201ENST00000413987 SPATA31A3Q5VYP0 1347 aa11.52□□□□□ -0.57
SNHG3-201ENST00000413987 ZNF500O60304 480 aaPredicted RBP11.52□□□□□ -0.57
SNHG3-201ENST00000413987 USHBP1Q8N6Y0 703 aa11.52□□□□□ -0.57
SNHG3-201ENST00000413987 HOXA2O43364 376 aa11.51□□□□□ -0.57
SNHG3-201ENST00000413987 PRKAR2BP31323 418 aa11.51□□□□□ -0.57
SNHG3-201ENST00000413987 CHRNA2Q15822 529 aa11.51□□□□□ -0.57
SNHG3-201ENST00000413987 GIGYF2Q6Y7W6 1299 aaKnown RBP11.51□□□□□ -0.57
SNHG3-201ENST00000413987 TCP11L2Q8N4U5 519 aa11.51□□□□□ -0.57
SNHG3-201ENST00000413987 PROCA1Q8NCQ7 364 aaPredicted RBP11.51□□□□□ -0.57
SNHG3-201ENST00000413987 PHACTR3Q96KR7 559 aa11.51□□□□□ -0.57
SNHG3-201ENST00000413987 AXIN2Q9Y2T1 843 aa11.51□□□□□ -0.57
SNHG3-201ENST00000413987 USP54Q70EL1 1684 aa11.51□□□□□ -0.57
SNHG3-201ENST00000413987 SBNO1A3KN83 1393 aa11.51□□□□□ -0.57
SNHG3-201ENST00000413987 FLT4P35916 1363 aa11.51□□□□□ -0.57
SNHG3-201ENST00000413987 SOS2Q07890 1332 aaPredicted RBP11.51□□□□□ -0.57
SNHG3-201ENST00000413987 TTC36A6NLP5 189 aa11.51□□□□□ -0.57
SNHG3-201ENST00000413987 MARSP56192 900 aaKnown RBP11.51□□□□□ -0.57
SNHG3-201ENST00000413987 BIRC2Q13490 618 aa11.51□□□□□ -0.57
SNHG3-201ENST00000413987 PLEKHF1Q96S99 279 aa11.51□□□□□ -0.57
SNHG3-201ENST00000413987 USP19O94966 1318 aa11.5□□□□□ -0.57
SNHG3-201ENST00000413987 SULT6B1Q6IMI4 303 aa11.5□□□□□ -0.57
SNHG3-201ENST00000413987 WWC3Q9ULE0 1092 aa11.5□□□□□ -0.57
SNHG3-201ENST00000413987 GOLGA6L3A6NEY3 463 aa11.5□□□□□ -0.57
SNHG3-201ENST00000413987 RHBDL3P58872 404 aa11.5□□□□□ -0.57
SNHG3-201ENST00000413987 PPP4CP60510 307 aa11.5□□□□□ -0.57
SNHG3-201ENST00000413987 CCDC96Q2M329 555 aa11.5□□□□□ -0.57
SNHG3-201ENST00000413987 SKAP1Q86WV1 359 aa11.5□□□□□ -0.57
SNHG3-201ENST00000413987 LRRC59Q96AG4 307 aaKnown RBP11.5□□□□□ -0.57
SNHG3-201ENST00000413987 RUNDC1Q96C34 613 aa11.5□□□□□ -0.57
SNHG3-201ENST00000413987 SENP7Q9BQF6 1050 aa11.5□□□□□ -0.57
SNHG3-201ENST00000413987 SLIT3O75094 1523 aa11.49□□□□□ -0.57
SNHG3-201ENST00000413987 ZNF280DQ6N043 979 aa11.49□□□□□ -0.57
SNHG3-201ENST00000413987 NBPF11Q86T75 865 aa11.49□□□□□ -0.57
SNHG3-201ENST00000413987 FBXO9Q9UK97 447 aaPredicted RBP11.49□□□□□ -0.57
SNHG3-201ENST00000413987 IQSEC2Q5JU85 1478 aa11.49□□□□□ -0.57
SNHG3-201ENST00000413987 UBAP1LF5GYI3 381 aa11.48□□□□□ -0.57
SNHG3-201ENST00000413987 TCEAL1Q15170 157 aa11.48□□□□□ -0.57
SNHG3-201ENST00000413987 ARHGEF25Q86VW2 580 aa11.48□□□□□ -0.57
SNHG3-201ENST00000413987 TMX4Q9H1E5 349 aaPredicted RBP11.48□□□□□ -0.57
SNHG3-201ENST00000413987 NHSL1Q5SYE7 1610 aa11.48□□□□□ -0.57
SNHG3-201ENST00000413987 PHRF1Q9P1Y6 1649 aaKnown RBP11.48□□□□□ -0.57
SNHG3-201ENST00000413987 KCNH5Q8NCM2 988 aa11.48□□□□□ -0.57
SNHG3-201ENST00000413987 RPS6KC1Q96S38 1066 aa11.48□□□□□ -0.57
SNHG3-201ENST00000413987 EYA1Q99502 592 aa11.48□□□□□ -0.57
SNHG3-201ENST00000413987 CCDC189A1A4V9 331 aa11.47□□□□□ -0.57
SNHG3-201ENST00000413987 DHX38Q92620 1227 aaKnown RBP11.47□□□□□ -0.57
SNHG3-201ENST00000413987 SCYL1Q96KG9 808 aa11.47□□□□□ -0.57
SNHG3-201ENST00000413987 KIAA0232Q92628 1395 aa11.47□□□□□ -0.57
SNHG3-201ENST00000413987 RGPD5Q99666 1765 aa11.47□□□□□ -0.57
SNHG3-201ENST00000413987 FSD2A1L4K1 749 aa11.47□□□□□ -0.57
SNHG3-201ENST00000413987 TBX4P57082 545 aa11.47□□□□□ -0.57
SNHG3-201ENST00000413987 TSNAXIP1Q2TAA8 658 aa11.47□□□□□ -0.57
SNHG3-201ENST00000413987 BRINP2Q9C0B6 783 aa11.47□□□□□ -0.57
SNHG3-201ENST00000413987 IRF2BPLQ9H1B7 796 aa11.47□□□□□ -0.57
SNHG3-201ENST00000413987 G3BP2Q9UN86 482 aaKnown RBP11.47□□□□□ -0.57
SNHG3-201ENST00000413987 MAPK8IP3Q9UPT6 1336 aa11.46□□□□□ -0.57
SNHG3-201ENST00000413987 RGPD2P0DJD1 1756 aa11.46□□□□□ -0.57
SNHG3-201ENST00000413987 CRYBG1Q9Y4K1 1723 aa11.46□□□□□ -0.57
SNHG3-201ENST00000413987 NUBP1P53384 320 aa11.46□□□□□ -0.57
SNHG3-201ENST00000413987 C20orf194Q5TEA3 1177 aa11.46□□□□□ -0.57
SNHG3-201ENST00000413987 IP6K1Q92551 441 aa11.46□□□□□ -0.57
SNHG3-201ENST00000413987 THUMPD2Q9BTF0 503 aaKnown RBP11.46□□□□□ -0.57
SNHG3-201ENST00000413987 PIF1Q9H611 641 aa11.46□□□□□ -0.57
SNHG3-201ENST00000413987 ARHGEF10LQ9HCE6 1279 aa11.46□□□□□ -0.57
SNHG3-201ENST00000413987 SWAP70Q9UH65 585 aa11.46□□□□□ -0.57
SNHG3-201ENST00000413987 ISY1Q9ULR0 285 aaKnown RBP11.46□□□□□ -0.57
SNHG3-201ENST00000413987 ZRANB2O95218 330 aaKnown RBP eCLIP11.45□□□□□ -0.58
SNHG3-201ENST00000413987 NBPF6Q5VWK0 638 aa11.45□□□□□ -0.58
SNHG3-201ENST00000413987 NBPF4Q96M43 638 aa11.45□□□□□ -0.58
SNHG3-201ENST00000413987 BSDC1Q9NW68 430 aaPredicted RBP11.45□□□□□ -0.58
SNHG3-201ENST00000413987 PRR12Q9ULL5 1215 aa11.45□□□□□ -0.58
SNHG3-201ENST00000413987 ZNF521Q96K83 1311 aa11.45□□□□□ -0.58
SNHG3-201ENST00000413987 RGPD1P0DJD0 1748 aa11.45□□□□□ -0.58
SNHG3-201ENST00000413987 ARHGEF10O15013 1369 aa11.45□□□□□ -0.58
SNHG3-201ENST00000413987 STK10O94804 968 aaKnown RBP11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms