RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 AFDNP55196 1824 aaKnown RBP8.38□□□□□ -1.07
VPS41-204ENST00000413141 KAT6BQ8WYB5 2073 aa8.38□□□□□ -1.07
VPS41-204ENST00000413141 CAPN15O75808 1086 aa8.37□□□□□ -1.07
VPS41-204ENST00000413141 IGHDP01880 384 aa8.37□□□□□ -1.07
VPS41-204ENST00000413141 ATP6V1AP38606 617 aa8.37□□□□□ -1.07
VPS41-204ENST00000413141 HDAC1Q13547 482 aaPredicted RBP8.37□□□□□ -1.07
VPS41-204ENST00000413141 ITPK1Q13572 414 aa8.37□□□□□ -1.07
VPS41-204ENST00000413141 RIC3Q7Z5B4 369 aa8.37□□□□□ -1.07
VPS41-204ENST00000413141 PLBD2Q8NHP8 589 aa8.37□□□□□ -1.07
VPS41-204ENST00000413141 RGS17Q9UGC6 210 aaPredicted RBP8.37□□□□□ -1.07
VPS41-204ENST00000413141 ZBTB1Q9Y2K1 713 aa8.37□□□□□ -1.07
VPS41-204ENST00000413141 ANKRD36CQ5JPF3 1778 aa8.37□□□□□ -1.07
VPS41-204ENST00000413141 BCORQ6W2J9 1755 aa8.37□□□□□ -1.07
VPS41-204ENST00000413141 TNS1Q9HBL0 1735 aaKnown RBP8.37□□□□□ -1.07
VPS41-204ENST00000413141 SCN7AQ01118 1682 aa8.37□□□□□ -1.07
VPS41-204ENST00000413141 TAF1LQ8IZX4 1826 aa8.36□□□□□ -1.07
VPS41-204ENST00000413141 ALDH1L1O75891 902 aa8.36□□□□□ -1.07
VPS41-204ENST00000413141 GNAI3P08754 354 aa8.36□□□□□ -1.07
VPS41-204ENST00000413141 RXRBP28702 533 aa8.36□□□□□ -1.07
VPS41-204ENST00000413141 FAM196AQ6ZSG2 479 aa8.36□□□□□ -1.07
VPS41-204ENST00000413141 TTLL7Q6ZT98 887 aa8.36□□□□□ -1.07
VPS41-204ENST00000413141 ANKRD13DQ6ZTN6 518 aa8.36□□□□□ -1.07
VPS41-204ENST00000413141 LINS1Q8NG48 757 aa8.36□□□□□ -1.07
VPS41-204ENST00000413141 METTL22Q9BUU2 404 aaPredicted RBP8.36□□□□□ -1.07
VPS41-204ENST00000413141 BCL11BQ9C0K0 894 aaPredicted RBP8.36□□□□□ -1.07
VPS41-204ENST00000413141 RWDD1Q9H446 243 aaPredicted RBP8.36□□□□□ -1.07
VPS41-204ENST00000413141 C4BP0C0L5 1744 aa8.35□□□□□ -1.07
VPS41-204ENST00000413141 GNAI2P04899 355 aa8.35□□□□□ -1.07
VPS41-204ENST00000413141 IGKV5-2P06315 115 aa8.35□□□□□ -1.07
VPS41-204ENST00000413141 IL6STP40189 918 aaPredicted RBP8.35□□□□□ -1.07
VPS41-204ENST00000413141 CRKLP46109 303 aaKnown RBP8.35□□□□□ -1.07
VPS41-204ENST00000413141 NEXNQ0ZGT2 675 aa8.35□□□□□ -1.07
VPS41-204ENST00000413141 CWF19L2Q2TBE0 894 aaKnown RBP8.35□□□□□ -1.07
VPS41-204ENST00000413141 CEP85Q6P2H3 762 aa8.35□□□□□ -1.07
VPS41-204ENST00000413141 INTS5Q6P9B9 1019 aaKnown RBP8.35□□□□□ -1.07
VPS41-204ENST00000413141 KIF6Q6ZMV9 814 aa8.35□□□□□ -1.07
VPS41-204ENST00000413141 ANKRD44Q8N8A2 993 aa8.35□□□□□ -1.07
VPS41-204ENST00000413141 LINC00116Q8NCU8 138 aa8.35□□□□□ -1.07
VPS41-204ENST00000413141 MYD88Q99836 296 aa8.35□□□□□ -1.07
VPS41-204ENST00000413141 USP44Q9H0E7 712 aa8.35□□□□□ -1.07
VPS41-204ENST00000413141 CCDC87Q9NVE4 849 aa8.35□□□□□ -1.07
VPS41-204ENST00000413141 MYH14Q7Z406 1995 aaKnown RBP8.35□□□□□ -1.07
VPS41-204ENST00000413141 RGPD3A6NKT7 1758 aaPredicted RBP8.35□□□□□ -1.07
VPS41-204ENST00000413141 RGPD4Q7Z3J3 1758 aa8.35□□□□□ -1.07
VPS41-204ENST00000413141 UTYO14607 1347 aa8.34□□□□□ -1.07
VPS41-204ENST00000413141 CNTNAP4Q9C0A0 1308 aa8.34□□□□□ -1.07
VPS41-204ENST00000413141 NEURL1BA8MQ27 555 aa8.34□□□□□ -1.07
VPS41-204ENST00000413141 NBPF7P0C2Y1 421 aaPredicted RBP8.34□□□□□ -1.07
VPS41-204ENST00000413141 UBTFL1P0CB47 393 aaPredicted RBP8.34□□□□□ -1.07
VPS41-204ENST00000413141 POTEAQ6S8J7 498 aa8.34□□□□□ -1.07
VPS41-204ENST00000413141 SIRT2Q8IXJ6 389 aa8.34□□□□□ -1.07
VPS41-204ENST00000413141 RPAP2Q8IXW5 612 aaPredicted RBP8.34□□□□□ -1.07
VPS41-204ENST00000413141 PELP1Q8IZL8 1130 aaKnown RBP8.34□□□□□ -1.07
VPS41-204ENST00000413141 ZBTB3Q9H5J0 574 aa8.34□□□□□ -1.07
VPS41-204ENST00000413141 CCNL1Q9UK58 526 aaPredicted RBP8.34□□□□□ -1.07
VPS41-204ENST00000413141 ZNF330Q9Y3S2 320 aaPredicted RBP8.34□□□□□ -1.07
VPS41-204ENST00000413141 COL15A1P39059 1388 aa8.34□□□□□ -1.07
VPS41-204ENST00000413141 MAP3K15Q6ZN16 1313 aa8.33□□□□□ -1.08
VPS41-204ENST00000413141 GRM8O00222 908 aa8.33□□□□□ -1.08
VPS41-204ENST00000413141 MYCNP04198 464 aaPredicted RBP8.33□□□□□ -1.08
VPS41-204ENST00000413141 C4AP0C0L4 1744 aa8.33□□□□□ -1.08
VPS41-204ENST00000413141 DSG3P32926 999 aa8.33□□□□□ -1.08
VPS41-204ENST00000413141 EIF5P55010 431 aaKnown RBP8.33□□□□□ -1.08
VPS41-204ENST00000413141 GCKRQ14397 625 aa8.33□□□□□ -1.08
VPS41-204ENST00000413141 SMC5Q8IY18 1101 aa8.33□□□□□ -1.08
VPS41-204ENST00000413141 LRRFIP2Q9Y608 721 aaKnown RBP8.33□□□□□ -1.08
VPS41-204ENST00000413141 EP400Q96L91 3159 aa8.32□□□□□ -1.08
VPS41-204ENST00000413141 NUP98P52948 1817 aa8.32□□□□□ -1.08
VPS41-204ENST00000413141 TRIM37O94972 964 aa8.32□□□□□ -1.08
VPS41-204ENST00000413141 KCNQ4P56696 695 aa8.32□□□□□ -1.08
VPS41-204ENST00000413141 SKAP1Q86WV1 359 aa8.32□□□□□ -1.08
VPS41-204ENST00000413141 DZIP3Q86Y13 1208 aaKnown RBP8.32□□□□□ -1.08
VPS41-204ENST00000413141 C9orf78Q9NZ63 289 aaPredicted RBP8.32□□□□□ -1.08
VPS41-204ENST00000413141 ERVV-1B6SEH8 477 aa8.31□□□□□ -1.08
VPS41-204ENST00000413141 ATP5J2-PTCD1G3V325 749 aa8.31□□□□□ -1.08
VPS41-204ENST00000413141 HMMRO75330 724 aa8.31□□□□□ -1.08
VPS41-204ENST00000413141 RC3H1Q5TC82 1133 aaKnown RBP8.31□□□□□ -1.08
VPS41-204ENST00000413141 GIGYF2Q6Y7W6 1299 aaKnown RBP8.31□□□□□ -1.08
VPS41-204ENST00000413141 NPM2Q86SE8 214 aaKnown RBP8.31□□□□□ -1.08
VPS41-204ENST00000413141 GCC1Q96CN9 775 aa8.31□□□□□ -1.08
VPS41-204ENST00000413141 SUCLG2Q96I99 432 aa8.31□□□□□ -1.08
VPS41-204ENST00000413141 ISCA1Q9BUE6 129 aa8.31□□□□□ -1.08
VPS41-204ENST00000413141 CWC25Q9NXE8 425 aaPredicted RBP8.31□□□□□ -1.08
VPS41-204ENST00000413141 LAMB2P55268 1798 aa8.3□□□□□ -1.08
VPS41-204ENST00000413141 UBR3Q6ZT12 1888 aa8.3□□□□□ -1.08
VPS41-204ENST00000413141 COL24A1Q17RW2 1714 aa8.3□□□□□ -1.08
VPS41-204ENST00000413141 PNMA6EA0A0J9YXQ4 647 aa8.3□□□□□ -1.08
VPS41-204ENST00000413141 CASP7P55210 303 aa8.3□□□□□ -1.08
VPS41-204ENST00000413141 ATP8B2P98198 1209 aa8.3□□□□□ -1.08
VPS41-204ENST00000413141 TCIRG1Q13488 830 aa8.3□□□□□ -1.08
VPS41-204ENST00000413141 MTX1Q13505 466 aa8.3□□□□□ -1.08
VPS41-204ENST00000413141 HLFQ16534 295 aa8.3□□□□□ -1.08
VPS41-204ENST00000413141 HSP90AB3PQ58FF7 597 aa8.3□□□□□ -1.08
VPS41-204ENST00000413141 SLC27A3Q5K4L6 730 aa8.3□□□□□ -1.08
VPS41-204ENST00000413141 CCDC191Q8NCU4 936 aa8.3□□□□□ -1.08
VPS41-204ENST00000413141 KAZALD1Q96I82 304 aa8.3□□□□□ -1.08
VPS41-204ENST00000413141 DCTPP1Q9H773 170 aa8.3□□□□□ -1.08
VPS41-204ENST00000413141 LRRC4BQ9NT99 713 aa8.3□□□□□ -1.08
VPS41-204ENST00000413141 PDZRN3Q9UPQ7 1066 aa8.3□□□□□ -1.08
VPS41-204ENST00000413141 TBC1D2BQ9UPU7 963 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms