RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 HEG1Q9ULI3 1381 aa6.9□□□□□ -1.31
CCDC88A-203ENST00000412148 SYCP1Q15431 976 aa6.9□□□□□ -1.31
CCDC88A-203ENST00000412148 TAF7Q15545 349 aaPredicted RBP6.9□□□□□ -1.31
CCDC88A-203ENST00000412148 RUFY2Q8WXA3 655 aa6.9□□□□□ -1.31
CCDC88A-203ENST00000412148 ZMYND15Q9H091 742 aa6.9□□□□□ -1.31
CCDC88A-203ENST00000412148 ANO2Q9NQ90 1003 aa6.9□□□□□ -1.31
CCDC88A-203ENST00000412148 R3HCC1Q9Y3T6 440 aaKnown RBP6.9□□□□□ -1.31
CCDC88A-203ENST00000412148 SNX14Q9Y5W7 946 aa6.9□□□□□ -1.31
CCDC88A-203ENST00000412148 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.9□□□□□ -1.31
CCDC88A-203ENST00000412148 SLIT3O75094 1523 aa6.89□□□□□ -1.31
CCDC88A-203ENST00000412148 F13A1P00488 732 aa6.89□□□□□ -1.31
CCDC88A-203ENST00000412148 XPCQ01831 940 aaPredicted RBP6.89□□□□□ -1.31
CCDC88A-203ENST00000412148 PKNOX2Q96KN3 472 aa6.89□□□□□ -1.31
CCDC88A-203ENST00000412148 EYA1Q99502 592 aa6.89□□□□□ -1.31
CCDC88A-203ENST00000412148 EXOC6BQ9Y2D4 811 aa6.89□□□□□ -1.31
CCDC88A-203ENST00000412148 LAMB4A4D0S4 1761 aa6.89□□□□□ -1.31
CCDC88A-203ENST00000412148 UTYO14607 1347 aa6.89□□□□□ -1.31
CCDC88A-203ENST00000412148 STX6O43752 255 aa6.89□□□□□ -1.31
CCDC88A-203ENST00000412148 KDM4AO75164 1064 aa6.89□□□□□ -1.31
CCDC88A-203ENST00000412148 GLRX3O76003 335 aaKnown RBP6.89□□□□□ -1.31
CCDC88A-203ENST00000412148 UBTFL1P0CB47 393 aaPredicted RBP6.89□□□□□ -1.31
CCDC88A-203ENST00000412148 UTP14CQ5TAP6 766 aaKnown RBP6.89□□□□□ -1.31
CCDC88A-203ENST00000412148 RBM43Q6ZSC3 357 aaKnown RBP6.89□□□□□ -1.31
CCDC88A-203ENST00000412148 ZSWIM6Q9HCJ5 1215 aa6.89□□□□□ -1.31
CCDC88A-203ENST00000412148 MST1RQ04912 1400 aa6.88□□□□□ -1.31
CCDC88A-203ENST00000412148 COL15A1P39059 1388 aa6.88□□□□□ -1.31
CCDC88A-203ENST00000412148 F6X3S4 739 aa6.88□□□□□ -1.31
CCDC88A-203ENST00000412148 HIP1O00291 1037 aa6.88□□□□□ -1.31
CCDC88A-203ENST00000412148 CAVIN2O95810 425 aa6.88□□□□□ -1.31
CCDC88A-203ENST00000412148 TSGA10IPQ3SY00 556 aa6.88□□□□□ -1.31
CCDC88A-203ENST00000412148 RHPN1Q8TCX5 695 aa6.88□□□□□ -1.31
CCDC88A-203ENST00000412148 FBXO3Q9UK99 471 aa6.88□□□□□ -1.31
CCDC88A-203ENST00000412148 LRRFIP2Q9Y608 721 aaKnown RBP6.88□□□□□ -1.31
CCDC88A-203ENST00000412148 PARP4Q9UKK3 1724 aaKnown RBP6.88□□□□□ -1.31
CCDC88A-203ENST00000412148 NCKAP5LQ9HCH0 1330 aa6.88□□□□□ -1.31
CCDC88A-203ENST00000412148 GIGYF1O75420 1035 aaPredicted RBP6.88□□□□□ -1.31
CCDC88A-203ENST00000412148 ALDH1L1O75891 902 aa6.88□□□□□ -1.31
CCDC88A-203ENST00000412148 ERC1Q8IUD2 1116 aa6.88□□□□□ -1.31
CCDC88A-203ENST00000412148 CCDC94Q9BW85 323 aaPredicted RBP6.88□□□□□ -1.31
CCDC88A-203ENST00000412148 HYPKQ9NX55 129 aa6.88□□□□□ -1.31
CCDC88A-203ENST00000412148 KIF1AQ12756 1690 aa6.88□□□□□ -1.31
CCDC88A-203ENST00000412148 AFDNP55196 1824 aaKnown RBP6.88□□□□□ -1.31
CCDC88A-203ENST00000412148 SYT1P21579 422 aa6.87□□□□□ -1.31
CCDC88A-203ENST00000412148 NOLC1Q14978 699 aaKnown RBP eCLIP6.87□□□□□ -1.31
CCDC88A-203ENST00000412148 RUFY3Q7L099 469 aa6.87□□□□□ -1.31
CCDC88A-203ENST00000412148 ARHGAP30Q7Z6I6 1101 aaPredicted RBP6.87□□□□□ -1.31
CCDC88A-203ENST00000412148 UNC5CLQ8IV45 518 aa6.87□□□□□ -1.31
CCDC88A-203ENST00000412148 TRPM3Q9HCF6 1732 aaPredicted RBP6.87□□□□□ -1.31
CCDC88A-203ENST00000412148 C5P01031 1676 aa6.87□□□□□ -1.31
CCDC88A-203ENST00000412148 TRIM6-TRIM34B2RNG4 842 aa6.87□□□□□ -1.31
CCDC88A-203ENST00000412148 GADD45BO75293 160 aaPredicted RBP6.87□□□□□ -1.31
CCDC88A-203ENST00000412148 HOXC9P31274 260 aa6.87□□□□□ -1.31
CCDC88A-203ENST00000412148 MKRN4PQ13434 485 aaPredicted RBP6.87□□□□□ -1.31
CCDC88A-203ENST00000412148 NECTIN1Q15223 517 aa6.87□□□□□ -1.31
CCDC88A-203ENST00000412148 SLC4A10Q6U841 1118 aa6.87□□□□□ -1.31
CCDC88A-203ENST00000412148 IL17REQ8NFR9 667 aa6.87□□□□□ -1.31
CCDC88A-203ENST00000412148 PDCP20941 246 aa6.87□□□□□ -1.31
CCDC88A-203ENST00000412148 AK2P54819 239 aa6.87□□□□□ -1.31
CCDC88A-203ENST00000412148 BEND3Q5T5X7 828 aa6.87□□□□□ -1.31
CCDC88A-203ENST00000412148 KIAA1524Q8TCG1 905 aa6.87□□□□□ -1.31
CCDC88A-203ENST00000412148 DNAJC5Q9H3Z4 198 aa6.87□□□□□ -1.31
CCDC88A-203ENST00000412148 SPDYE4A6NLX3 237 aa6.86□□□□□ -1.31
CCDC88A-203ENST00000412148 GOLGA6L6A8MZA4 724 aa6.86□□□□□ -1.31
CCDC88A-203ENST00000412148 CTIFO43310 598 aaKnown RBP6.86□□□□□ -1.31
CCDC88A-203ENST00000412148 ANKRD1Q15327 319 aa6.86□□□□□ -1.31
CCDC88A-203ENST00000412148 PPP1R42Q7Z4L9 355 aa6.86□□□□□ -1.31
CCDC88A-203ENST00000412148 RILPL2Q969X0 211 aa6.86□□□□□ -1.31
CCDC88A-203ENST00000412148 IL25Q9H293 177 aa6.86□□□□□ -1.31
CCDC88A-203ENST00000412148 DIAPH3Q9NSV4 1193 aa6.86□□□□□ -1.31
CCDC88A-203ENST00000412148 MTMR6Q9Y217 621 aa6.86□□□□□ -1.31
CCDC88A-203ENST00000412148 ARFGEF2Q9Y6D5 1785 aa6.86□□□□□ -1.31
CCDC88A-203ENST00000412148 FOXO3O43524 673 aa6.86□□□□□ -1.31
CCDC88A-203ENST00000412148 ADCY5O95622 1261 aa6.86□□□□□ -1.31
CCDC88A-203ENST00000412148 RGS22Q8NE09 1264 aa6.86□□□□□ -1.31
CCDC88A-203ENST00000412148 EVI5LQ96CN4 794 aa6.86□□□□□ -1.31
CCDC88A-203ENST00000412148 GPATCH3Q96I76 525 aa6.86□□□□□ -1.31
CCDC88A-203ENST00000412148 SMC3Q9UQE7 1217 aa6.86□□□□□ -1.31
CCDC88A-203ENST00000412148 ADCY9O60503 1353 aa6.86□□□□□ -1.31
CCDC88A-203ENST00000412148 TMEM94Q12767 1356 aa6.86□□□□□ -1.31
CCDC88A-203ENST00000412148 NPHP4O75161 1426 aaPredicted RBP6.85□□□□□ -1.31
CCDC88A-203ENST00000412148 PTMAP06454 111 aaKnown RBP6.85□□□□□ -1.31
CCDC88A-203ENST00000412148 CCDC192P0DO97 292 aa6.85□□□□□ -1.31
CCDC88A-203ENST00000412148 CDC25BP30305 580 aa6.85□□□□□ -1.31
CCDC88A-203ENST00000412148 EIF4A1P60842 406 aaKnown RBP6.85□□□□□ -1.31
CCDC88A-203ENST00000412148 FAM69CQ0P6D2 419 aa6.85□□□□□ -1.31
CCDC88A-203ENST00000412148 KCND1Q9NSA2 647 aa6.85□□□□□ -1.31
CCDC88A-203ENST00000412148 HMG20BQ9P0W2 317 aa6.85□□□□□ -1.31
CCDC88A-203ENST00000412148 ZNF219Q9P2Y4 722 aaPredicted RBP6.85□□□□□ -1.31
CCDC88A-203ENST00000412148 PRDM4Q9UKN5 801 aa6.85□□□□□ -1.31
CCDC88A-203ENST00000412148 MED23Q9ULK4 1368 aa6.85□□□□□ -1.31
CCDC88A-203ENST00000412148 PKD1L3Q7Z443 1732 aa6.85□□□□□ -1.31
CCDC88A-203ENST00000412148 PSMA5P28066 241 aa6.85□□□□□ -1.31
CCDC88A-203ENST00000412148 DNAAF4Q8WXU2 420 aa6.85□□□□□ -1.31
CCDC88A-203ENST00000412148 ANKRD7Q92527 254 aa6.85□□□□□ -1.31
CCDC88A-203ENST00000412148 MAP4K1Q92918 833 aa6.85□□□□□ -1.31
CCDC88A-203ENST00000412148 UPF3BQ9BZI7 483 aaKnown RBP6.85□□□□□ -1.31
CCDC88A-203ENST00000412148 ECHDC1Q9NTX5 307 aa6.85□□□□□ -1.31
CCDC88A-203ENST00000412148 CNPY2Q9Y2B0 182 aa6.85□□□□□ -1.31
CCDC88A-203ENST00000412148 CYP46A1Q9Y6A2 500 aa6.85□□□□□ -1.31
CCDC88A-203ENST00000412148 AMPHP49418 695 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 84.4 ms