RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 PROSER3Q2NL68 480 aa24.98■■□□□ 1.59
SF3A1-202ENST00000411423 CLEC4GQ6UXB4 293 aa24.98■■□□□ 1.59
SF3A1-202ENST00000411423 ANXA1P04083 346 aa24.97■■□□□ 1.59
SF3A1-202ENST00000411423 EIF2S2P20042 333 aaKnown RBP24.97■■□□□ 1.59
SF3A1-202ENST00000411423 DALRD3Q5D0E6 543 aaKnown RBP24.97■■□□□ 1.59
SF3A1-202ENST00000411423 ATP10DQ9P241 1426 aa24.96■■□□□ 1.59
SF3A1-202ENST00000411423 ARHGAP27Q6ZUM4 889 aa24.96■■□□□ 1.59
SF3A1-202ENST00000411423 C2CD5Q86YS7 1000 aa24.96■■□□□ 1.59
SF3A1-202ENST00000411423 NECTIN2Q92692 538 aa24.95■■□□□ 1.58
SF3A1-202ENST00000411423 MAP3K15Q6ZN16 1313 aa24.94■■□□□ 1.58
SF3A1-202ENST00000411423 ANP32CO43423 234 aa24.94■■□□□ 1.58
SF3A1-202ENST00000411423 ZNF853P0CG23 659 aa24.94■■□□□ 1.58
SF3A1-202ENST00000411423 CNBD1Q8NA66 436 aa24.94■■□□□ 1.58
SF3A1-202ENST00000411423 BRIP1Q9BX63 1249 aa24.94■■□□□ 1.58
SF3A1-202ENST00000411423 NIP7Q9Y221 180 aaKnown RBP eCLIP24.94■■□□□ 1.58
SF3A1-202ENST00000411423 NUP98P52948 1817 aa24.93■■□□□ 1.58
SF3A1-202ENST00000411423 ERBB4Q15303 1308 aa24.93■■□□□ 1.58
SF3A1-202ENST00000411423 RGL2O15211 777 aa24.93■■□□□ 1.58
SF3A1-202ENST00000411423 ZNF652Q9Y2D9 606 aa24.93■■□□□ 1.58
SF3A1-202ENST00000411423 CFAP44Q96MT7 982 aa24.92■■□□□ 1.58
SF3A1-202ENST00000411423 ZBTB3Q9H5J0 574 aa24.92■■□□□ 1.58
SF3A1-202ENST00000411423 MBIPQ9NS73 344 aa24.92■■□□□ 1.58
SF3A1-202ENST00000411423 FAM177BA6PVY3 158 aa24.91■■□□□ 1.58
SF3A1-202ENST00000411423 ERVV-1B6SEH8 477 aa24.91■■□□□ 1.58
SF3A1-202ENST00000411423 NBPF5PQ86XG9 351 aaPredicted RBP24.91■■□□□ 1.58
SF3A1-202ENST00000411423 MRS2Q9HD23 443 aa24.91■■□□□ 1.58
SF3A1-202ENST00000411423 H0YIN7 160 aa24.9■■□□□ 1.58
SF3A1-202ENST00000411423 UBN2Q6ZU65 1347 aa24.89■■□□□ 1.58
SF3A1-202ENST00000411423 PDE6BP35913 854 aa24.88■■□□□ 1.57
SF3A1-202ENST00000411423 PRELPP51888 382 aa24.88■■□□□ 1.57
SF3A1-202ENST00000411423 ST5P78524 1137 aa24.88■■□□□ 1.57
SF3A1-202ENST00000411423 KIF6Q6ZMV9 814 aa24.88■■□□□ 1.57
SF3A1-202ENST00000411423 TTLL6Q8N841 843 aa24.88■■□□□ 1.57
SF3A1-202ENST00000411423 TNRC6CQ9HCJ0 1690 aaKnown RBP24.88■■□□□ 1.57
SF3A1-202ENST00000411423 RASSF7Q02833 373 aa24.87■■□□□ 1.57
SF3A1-202ENST00000411423 ZNF526Q8TF50 670 aaPredicted RBP24.87■■□□□ 1.57
SF3A1-202ENST00000411423 ZNF622Q969S3 477 aaKnown RBP eCLIP24.87■■□□□ 1.572e-7■□□□□ 10.6
SF3A1-202ENST00000411423 ABCC12Q96J65 1359 aa24.87■■□□□ 1.57
SF3A1-202ENST00000411423 NPHP1O15259 732 aa24.86■■□□□ 1.57
SF3A1-202ENST00000411423 SRGNP10124 158 aa24.86■■□□□ 1.57
SF3A1-202ENST00000411423 GPTP24298 496 aa24.86■■□□□ 1.57
SF3A1-202ENST00000411423 IFT57Q9NWB7 429 aa24.86■■□□□ 1.57
SF3A1-202ENST00000411423 C9orf131Q5VYM1 1079 aa24.85■■□□□ 1.57
SF3A1-202ENST00000411423 GIGYF2Q6Y7W6 1299 aaKnown RBP24.85■■□□□ 1.57
SF3A1-202ENST00000411423 ZNF34Q8IZ26 560 aa24.85■■□□□ 1.57
SF3A1-202ENST00000411423 CHPF2Q9P2E5 772 aa24.85■■□□□ 1.57
SF3A1-202ENST00000411423 SBF1O95248 1867 aa24.84■■□□□ 1.57
SF3A1-202ENST00000411423 KLRG2A4D1S0 409 aaPredicted RBP24.84■■□□□ 1.57
SF3A1-202ENST00000411423 SUSD4Q5VX71 490 aa24.84■■□□□ 1.57
SF3A1-202ENST00000411423 DUSP27Q5VZP5 1158 aa24.84■■□□□ 1.57
SF3A1-202ENST00000411423 TPTE2Q6XPS3 522 aa24.84■■□□□ 1.57
SF3A1-202ENST00000411423 COPS6Q7L5N1 327 aa24.84■■□□□ 1.57
SF3A1-202ENST00000411423 NUTM1Q86Y26 1132 aa24.84■■□□□ 1.57
SF3A1-202ENST00000411423 XAGE3Q8WTP9 111 aa24.84■■□□□ 1.57
SF3A1-202ENST00000411423 DDX21Q9NR30 783 aaKnown RBP eCLIP24.84■■□□□ 1.57
SF3A1-202ENST00000411423 SLX4Q8IY92 1834 aa24.84■■□□□ 1.57
SF3A1-202ENST00000411423 CACNA1SQ13698 1873 aa24.83■■□□□ 1.57
SF3A1-202ENST00000411423 AIMP1Q12904 312 aaKnown RBP24.83■■□□□ 1.57
SF3A1-202ENST00000411423 ZNF219Q9P2Y4 722 aaPredicted RBP24.83■■□□□ 1.57
SF3A1-202ENST00000411423 NFKBIEO00221 500 aa24.82■■□□□ 1.56
SF3A1-202ENST00000411423 ERFEQ4G0M1 354 aa24.82■■□□□ 1.56
SF3A1-202ENST00000411423 HDGFL1Q5TGJ6 251 aa24.82■■□□□ 1.56
SF3A1-202ENST00000411423 PDZRN3Q9UPQ7 1066 aa24.82■■□□□ 1.56
SF3A1-202ENST00000411423 ARFGEF2Q9Y6D5 1785 aa24.81■■□□□ 1.56
SF3A1-202ENST00000411423 C21orf2O43822 256 aa24.81■■□□□ 1.56
SF3A1-202ENST00000411423 HOXB7P09629 217 aa24.81■■□□□ 1.56
SF3A1-202ENST00000411423 GNAI1P63096 354 aa24.81■■□□□ 1.56
SF3A1-202ENST00000411423 STYK1Q6J9G0 422 aa24.81■■□□□ 1.56
SF3A1-202ENST00000411423 C8orf58Q8NAV2 365 aa24.81■■□□□ 1.56
SF3A1-202ENST00000411423 ELL2O00472 640 aaPredicted RBP24.8■■□□□ 1.56
SF3A1-202ENST00000411423 NTSR2O95665 410 aa24.8■■□□□ 1.56
SF3A1-202ENST00000411423 WWC1Q8IX03 1113 aa24.8■■□□□ 1.56
SF3A1-202ENST00000411423 MASTLQ96GX5 879 aa24.8■■□□□ 1.56
SF3A1-202ENST00000411423 CCDC27Q2M243 656 aa24.79■■□□□ 1.56
SF3A1-202ENST00000411423 PRPF40BQ6NWY9 871 aaKnown RBP24.79■■□□□ 1.56
SF3A1-202ENST00000411423 GPBP1L1Q9HC44 474 aaPredicted RBP24.79■■□□□ 1.56
SF3A1-202ENST00000411423 RNF181Q9P0P0 153 aa24.79■■□□□ 1.56
SF3A1-202ENST00000411423 CALD1Q05682 793 aaKnown RBP24.78■■□□□ 1.56
SF3A1-202ENST00000411423 TSR2Q969E8 191 aaKnown RBP24.78■■□□□ 1.56
SF3A1-202ENST00000411423 IBTKQ9P2D0 1353 aaPredicted RBP24.78■■□□□ 1.56
SF3A1-202ENST00000411423 ANKRD36CQ5JPF3 1778 aa24.77■■□□□ 1.56
SF3A1-202ENST00000411423 C1QTNF8P60827 252 aa24.77■■□□□ 1.56
SF3A1-202ENST00000411423 C3orf67Q6ZVT6 689 aa24.77■■□□□ 1.56
SF3A1-202ENST00000411423 TSPYL6Q8N831 410 aa24.77■■□□□ 1.56
SF3A1-202ENST00000411423 CNKSR1Q969H4 720 aa24.77■■□□□ 1.56
SF3A1-202ENST00000411423 NYXQ9GZU5 481 aa24.77■■□□□ 1.56
SF3A1-202ENST00000411423 FER1L6Q2WGJ9 1857 aa24.77■■□□□ 1.56
SF3A1-202ENST00000411423 C7orf43Q8WVR3 580 aa24.76■■□□□ 1.55
SF3A1-202ENST00000411423 DBF4Q9UBU7 674 aaPredicted RBP24.76■■□□□ 1.55
SF3A1-202ENST00000411423 NPR1P16066 1061 aa24.75■■□□□ 1.55
SF3A1-202ENST00000411423 GTF2E1P29083 439 aaPredicted RBP24.75■■□□□ 1.55
SF3A1-202ENST00000411423 OLFM4Q6UX06 510 aa24.75■■□□□ 1.55
SF3A1-202ENST00000411423 ZNF428Q96B54 188 aa24.75■■□□□ 1.55
SF3A1-202ENST00000411423 KIF3CO14782 793 aa24.74■■□□□ 1.55
SF3A1-202ENST00000411423 CRY2Q49AN0 593 aa24.74■■□□□ 1.55
SF3A1-202ENST00000411423 SLC51AQ86UW1 340 aa24.74■■□□□ 1.55
SF3A1-202ENST00000411423 SALL2Q9Y467 1007 aaPredicted RBP24.74■■□□□ 1.55
SF3A1-202ENST00000411423 RIC1Q4ADV7 1423 aa24.74■■□□□ 1.55
SF3A1-202ENST00000411423 CCDC88AQ3V6T2 1871 aa24.73■■□□□ 1.55
SF3A1-202ENST00000411423 TCIRG1Q13488 830 aa24.73■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms